TCONS_00069272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069272
Unique NameTCONS_00069272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2107

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069272 ID=TCONS_00069272|Name=TCONS_00069272|organism=Clytia hemisphaerica|type=transcript|length=2107bp
TCAGGGGTATACCGGGATGTGAATCGTCGGCCGAAGCTTTCGCCATGGAA
GAAATTGATGGAAAATCGTTTCTCTTACTCAGGGTGGACCACATGGTACA
AACAATGAACTTGAAACTTGGTCCTGCCCTCAAAATTGCTTCTTGTTTGA
GGGATATTAAAATGGAGTATGGTATTCAAACAAGGACGAAATATTTGAGC
TCCCCTTCATAGCATTTGTTTGAATAGGTGCATTTCTTACTGGATGGTGG
TGAAAAAGCAAGTCTTTCATGGAGAGAGAGATAGCTTTTCTTCAGGTTAT
TAAGTTTTCGTGCTTTAGTTTTGGTAGCAATAGGGCTGATCCCTGCAGGC
AATAATTATCAGGTGATATGCTGTCTGTTTCAATGTTGAAAATTGATTCC
ATCAAATCGGGTGACGTTTTACGTATGCTTATTGGAATTCATCTCATTGG
GAGTTAAATAAACCCTGTTCAATCGATTCCTTTCCATCAGGTACTGAAAT
TCTTGCTCGATTGGCAATCGATTTGGTGACCCGGTCGTGTATCAAGTTCT
CGATGAACGTCGAATGTGATGCGTTTCGTATCGGTTCGAAATTTATCCCT
GCTTGCATTCATATTGCTCTTATCCTGGGAAGCATGGAAAGCTGTCATTA
CTACCGAATTACGTCATCGCGCCATACGGAGAATCACGGAAGCATTCGAA
GCATCAACCAAATTCGATGAAAAGCTTTTGACAAATGAATACTTAGTGAC
GGAAAACTCAGTGGACGTGGAGTATGCGGCCGTACAACGTTTACGTAAGA
AGGTATTGAAAACGGGATGTCATCAACGCAAAGTAGAAGATATTTACCCC
CTCAACACTGACTTTAACAAAGGAATCAATCCAAGTGCATTTCGTAATAT
ATTGGTCAGCGACAAACATCAACTTCTGTACTGCATTACACCCAAAGTGG
CTTGCACTAATTGGAAACGTGTCCTACTAGTACTGGAtggatattttaca
gacccgaataataTTACTGCTTCGTTAGCTCACGATTTCAATCAAGGATA
TTTTCGACGTTTAAGCGATTATACACCTGACGAAATTAATTTACGTTTAT
CAACTTattacaaatttttatttgcaaGACATCCTTTTGAACGATTAACA
GCAGCTTATAGGAATAAATTCATTTATCAAAATACACAGAACAAATTTTT
CAGCGTCATTTTTGGACAGTTTATAAGACGCAAATACCGTCATCATAATT
CGACGACTACTAAGAAATCTTCAGTAACTTTTGCAGAGTTTGTACAGTAC
ATTGTTGACTCGCCTCTGGAGGATAAAGAGTTCTGGAACGAGCATTGGGA
ACGAATAGAGAGATTATGTCTGCCTTGTTTAATACAATATGACTTTATTG
GcaaatttgaaactttgaaACAAGACGCTGATTTTCTTTTACGGACACTC
GATGTAAATGACTTGGTCAAATTTCCGGACGGCTATAAAGGACATGCTTC
GAGTACACCATCTTTGATGAGaaatttatttgaatctttaccGAAGAGGT
TACTGGAGAAATTGTATGAATTGTATAAAATGGATTTCATGCTGTTTGGC
TATCAAAATGGTTTTGAATCCTAGACTAAAATATACATTGAACTGGTCCT
TTTTTTGACGTCCATCGAAACAGGTTTAAGGCCGTGAAGGCTGATtagta
ggctgctggcatcgtttttttacaaaattattcACCATTTGTGATTCCAT
CGAGGTGCAATTTTAAATTAAATCCCTAGCAATCCCAGTCAAACCAATGA
ATTGTAACCCTTCTTTCTATGTATATATGTatcttgttttaaaattttcg
caaCCATAGGCGCTATCAGCCAAGCGTATTGTGCTTTCGATGTTATAAAA
TAGCATATCATGCCGCCCATGAAATGTACTTCATTTTGTATATACTTCTc
tgtatttttgttttgtacCTAAATTTCATGGTAAAAAGAGTCTTCCACTA
AAAACTTTTCTTAGCGCAAACCAATCTATTTTATGTGATACGCTTTAGGA
TTTTGTTTATAAAGAGTGTTGTAAGTGTTTTTATACAGATgtcaaatttc
attaaaa
Run BLAST on NCBI

protein sequence of TCONS_00069272-protein

>TCONS_00069272-protein ID=TCONS_00069272-protein|Name=TCONS_00069272-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MRFVSVRNLSLLAFILLLSWEAWKAVITTELRHRAIRRITEAFEASTKFD
EKLLTNEYLVTENSVDVEYAAVQRLRKKVLKTGCHQRKVEDIYPLNTDFN
KGINPSAFRNILVSDKHQLLYCITPKVACTNWKRVLLVLDGYFTDPNNIT
ASLAHDFNQGYFRRLSDYTPDEINLRLSTYYKFLFARHPFERLTAAYRNK
FIYQNTQNKFFSVIFGQFIRRKYRHHNSTTTKKSSVTFAEFVQYIVDSPL
EDKEFWNEHWERIERLCLPCLIQYDFIGKFETLKQDADFLLRTLDVNDLV
KFPDGYKGHASSTPSLMRNLFESLPKRLLEKLYELYKMDFMLFGYQNGFE
S
Run BLAST on NCBI

transcript from alignment at scaffold_496:643921..649481-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069272 ID=TCONS_00069272|Name=TCONS_00069272|organism=Clytia hemisphaerica|type=transcript|length=5561bp|location=Sequence derived from alignment at scaffold_496:643921..649481- (Clytia hemisphaerica)
TCAGGGGTATACCGGGATGTGAATCGTCGGCCGAAGCTTTCGCCATGGAA
GAAATTGATGGAAAATCGTTTCTCTTACTCAGGGTGGACCACATGGTACA
AACAATGAACTTGAAACTTGGTCCTGCCCTCAAAATTGCTTCTTGTTTGA
GGGATATTAAAATGGAGTATGGTATTCAAACAAGGACGAAATATTTGAGC
TCCCCTTCATAGCATTTGTTTGAATAGGTGCATTTCTTACTGGATGGTGG
TGAAAAAGCAAGTCTTTCATGGAGAGAGAGATAGCTTTTCTTCAGGTTAT
TAAGTTTTCGTGCTTTAGTTTTGGTAGCAATAGGGCTGATCCCTGCAGGC
AATAATTATCAGGTGATATGCTGTCTGTTTCAATGTTGAAAATTGATTCC
ATCAAATCGGGTGACGTTTTACGTATGCTTATTGGAATTCATCTCATTGG
GAGTTAAATAAACCCTGTTCAATCGATTCCTTTCCATCAGGTTAGACCAC
AGTTGCTTTGATTTGCACAACTTTTGCTTTGCTTTGGTGCGAAATCCAGA
TCAGAATCGATGGCTTGTTTTGCTATCGATACGTTTTGGGATCGCGGGAA
CAATACAATATTTCTTCATATTGAAGAACAGTCTCACGAAACAAAGGGAT
TCGAATTATGAGAAAAGTGAACTGTTTTCAAACGAAACTCAATTTAAATC
AAAATTCAATCTTCTGGAGATTACTCTGCGCTAATTCAATTACGATATTC
AGTTCATAAAAGAGAGAAGATTTCTTTACGAAAATTATAAACAAATGATA
TTTTCTTTTTCTACTCACTCTCTGAATAACAAAGAAAAAAACAAAAGAGA
ATTTAACAATGCGAACAATGCCCCTGTTTTGAAACACCTCTTCAGCATAA
TTCGTCCAATAATTAATCTGCTAAACCTAATTAGAGCGTCTTCTAAATTA
TCACTTATCTGTCTGAGGGGGGCTTCTTTAATACGAAGCAGCTGTCTTTT
GAAGTTGGAGATTTATTTGTCAGAAAATGTTTACAAGGTTTAAAAAAAAA
CTGGAAATTGCTCTGCTGGATAAATTTGGATTTATTTTTGAAAAATAATC
TTTGTATACATAGATCGAGATTTTGATTTGCATCGGATATCTATCAAAAT
CAGTTTCTTATGAGAACTGTATCTGTTGCGTAATGATTCGGATGTTAGTG
TTAAACAAAAGATTATAATCCGCAGCTCTGCTCGAAATTCCTTTTGTTTT
TTTTTCTATTTATCTTCCCAAAAAGGTTAAACTAAATGAAATTTAGGTAC
TGAAATTCTTGCTCGATTGGCAATCGATTTGGTGACCCGGTCGTGTATCA
AGTTCTCGATGAACGTCGAATGTGATGCGTTTCGTATCGGTTCGAAATTT
ATCCCTGCTTGCATTCATATTGCTCTTATCCTGGGAAGCATGGAAAGCTG
TCATTACTACCGAATTACGTCATCGCGCCATACGGAGAATCACGGAAGGT
TGGTAACGTGTCATTGAATTTTGTAGCTTTTTATGTGTTTTTATAGTATC
ATATCAATTTCTTTGAATATCATCGTGGCTGACTCTAGTCAGAAAATCTG
CCGTATACTATGTTGGCTTTCTGATTTTGAATGATGGTGCTACGATAGGA
CTCTACTTTTTCCCCCATCAGAATTATTAAAGGCAAAAAGTAGTTAAGCT
CCAGCTTAACTCTTCAATTCGGGGGGGAGGGGTTGATTTTTTTTATTTAT
CTAAAGTAAAATTTGAACTTGAACATAGCACATGTAAGTGATATAACTTA
AAGTTTGACTGCGAGTCAAACCAATACGAAGCCAGCAACGCATATTTATA
CTTCACGGTTTATGTACCAGTTAATTGGGTCATTTTAGTCAGCTATTAAA
ACAATCTTTTCGTTCCAGCATTCGAAGCATCAGCCAAATTCGATGAAAAG
CTTTTGACAAATGTAAGTGCATAAAGTTTTATAGTAATTTGACACATCAT
TAAATTTTCTAGATTTTCCTACTTTCTTTTGTGATTGAACTTAATAGGTC
AAGAGATTTTTCGATGGAAATCTATTTTGGCGTAAGGCTGAAAAGTTTTT
TAGAGTAGATTTCATCATGCAGATGGGTAGGAAAGTTAAATTTGATCATA
ACATGATATTTTAGGATGCGAAATTATAAACGTTTTTAATATCATGATAT
GAGTAAGTTAAACGCTCAAAACTTATTATTTTCCTTTCTCTCTCTGATAA
GGAATATTTAGTGACGGAAAACTCAGTGGACGTGGAGTATGCGGCCGTGC
AACGTTTACGTAAGAAGGTATTGAAAACGGGATGTCATCAACGCAAAGTA
GAAGATGTCTACCCCCTCAACACTGACTTCAACAAAGGAATCAATCCAAG
TGCATTTCGTAATATATTGGTAATGGAGAAATCTTATTGATTTTTTGTTA
TGTCTGTCTGTCTGTCTATCTATCCTAGCTAATTAAATTGCACACTGTTT
GATAAGATTATTGTACTTTGGATTAAGATCAAACATTATTCCTTTTTCTC
TTTTGTTCTATACTGTATTTACTTGATATTGTGATACCGAAATCACACCC
TGAAATACTTCTAGAAATTATTGTTTTGTCGTGGTTAGTCATTTGAACGT
AGACTTATTATTTAAGTAGGTTGAATTGGACTTACAGCTTGACTCCTAGA
ATTGAACTCGTTGAGTATGTATACTCTCAAAAATGACAAAAAAATTGTAA
TGGCTTAGTTTAATGTAAATCCGAAAACTTAAATAATATCCTTCAAGTCA
TCCGTTGCTTTTATGAGTTTTGTGTTCATTTCATTACAGGTGAGCGACAA
ACACCAACTTCTGTACTGCATTACACCCAAAGTGGCTTGCACTAATTGGA
AACGTGTTCTACTAGTACTGGATGGATATTTTACAGACCCGAATAATATT
ACTGCTTCGTTAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTAAAATTTGAACTTGAACATAGCACATGTAA
GTGATATAACTTAAAGTTTGACTGCGAGTCAAACCAATACGAAGCCAGCA
ACGCATATTTATACTTCACGGTTTATGTACCAGTTAATTGGGTCATTTTA
GTCAGCTATTAAAACAATCTTTTCGTTCCAGCATTCGAAGCATCAACCAA
ATTCGATGAAAAGCTTTTGACAAATGTAAGTGCATAAAGTTTTATAGTAA
TTTGACACATCATTAAATTTTCTAGATTTTCCTACTTTCTTTTGTGATTG
AACTTAATAGGTCAAGAGATTTTTCGATGGAAATCTATTTTGGCGTAAGG
CTGAAAAGTCTTTTAGAGTAGATTTCATCATGCAGATGGGTAGGAAAGCT
AAATTTGATCATAACATGATATTTTAGGATGCGAAATTTTAAACGTTTTT
AATATCATGATATGAATAAGTTAAACGCTCAAAACTTATTATTTTCCTTC
CTCTCTCTGACAAGGAATACTTAGTGACGGAAAACTCAGTGGACGTGGAG
TATGCGGCCGTACAACGTTTACGTAAGAAGGTATTGAAAACGGGATGTCA
TCAACGCAAAGTAGAAGATATTTACCCCCTCAACACTGACTTTAACAAAG
GAATCAATCCAAGTGCATTTCGTAATATATTGGTAATGGGAAATCTTATT
GATTTCTTGTCTGTCTGTCTGTATGTCTGTATGGCTGTTTATCCTAGCTA
ATTAAATCGCACACTGTTAAATAAGATTATTGTACTTTGGATTAAGATTA
AACATTATTCCTTTTTCTCTTTTGTTCTATACGATATTTACTTGATATTG
TGATACCGAAATCACACCCTGAGATACTTCTAGAAATTATTGTTTTGTTG
TGGTTAGTCATTTAAATGTAAACTTAATATTTAAGTAGGGTGAGCTGAAC
TTAGAGCTTGACTCCTAGAATTGAACTCGTTGAGTATGTATACTTTCAAA
AATGACAAAAAATTTGTAATGGCTTAGTTTAATGTAAATCTGAAAACTTA
GATAATACCCTTCAAGTCATCCGTTGCTTTTATGAGTTTTGTGTTCATTT
CATTACAGGTCAGCGACAAACATCAACTTCTGTACTGCATTACACCCAAA
GTGGCTTGCACTAATTGGAAACGTGTCCTACTAGTACTGGATGGATATTT
TACAGACCCGAATAATATTACTGCTTCGTTAGCTCACGATTTCAATCAAG
GATATTTTCGACGTTTAAGCGATTATACACCTGACGAAATTAATTTACGT
TTATCAACTTATTACAAATTTTTATTTGCAAGACATCCTTTTGAACGATT
AACAGCAGCTTATAGGAATAAATTCATTTATCAAAATACACAGAACAAAT
TTTTCAGCGTCATTTTTGGACAGTTTATAAGACGCAAATACCGTCATCAT
AATTCGACGACTACTAAGAAATCTTCAGTAACTTTTGCAGAGTTTGTACA
GTACATTGTTGACTCGCCTCTGGAGGATAAAGAGTTCTGGAACGAGCATT
GGGAACGAATAGAGAGATTATGTCTGCCTTGTTTAATACAATATGACTTT
ATTGGCAAATTTGAAACTTTGAAACAAGACGCTGATTTTCTTTTACGGAC
ACTCGATGTAAATGACTTGGTCAAATTTCCGGACGGCTATAAAGGACATG
CTTCGAGTACACCATCTTTGATGAGAAATTTATTTGAATCTTTACCGAAG
AGGTTACTGGAGAAATTGTATGAATTGTATAAAATGGATTTCATGCTGTT
TGGCTATCAAAATGGTTTTGAATCCTAGACTAAAATATACATTGAACTGG
TCCTTTTTTTGACGTCCATCGAAACAGGTTTAAGGCCGTGAAGGCTGATT
AGTAGGCTGCTGGCATCGTTTTTTTACAAAATTATTCACCATTTGTGATT
CCATCGAGGTGCAATTTTAAATTAAATCCCTAGCAATCCCAGTCAAACCA
ATGAATTGTAACCCTTCTTTCTATGTATATATGTATCTTGTTTTAAAATT
TTCGCAACCATAGGCGCTATCAGCCAAGCGTATTGTGCTTTCGATGTTAT
AAAATAGCATATCATGCCGCCCATGAAATGTACTTCATTTTGTATATACT
TCTCTGTATTTTTGTTTTGTACCTAAATTTCATGGTAAAAAGAGTCTTCC
ACTAAAAACTTTTCTTAGCGCAAACCAATCTATTTTATGTGATACGCTTT
AGGATTTTGTTTATAAAGAGTGTTGTAAGTGTTTTTATACAGATGTCAAA
TTTCATTAAAA

Coding sequence (CDS) from alignment at scaffold_496:643921..649481-

>TCONS_00069272 ID=TCONS_00069272|Name=TCONS_00069272|organism=Clytia hemisphaerica|type=CDS|length=4224bp|location=Sequence derived from alignment at scaffold_496:643921..649481- (Clytia hemisphaerica)
GTCAGCGACAAACATCAACTTCTGTACTGCATTACACCCAAAGTGGCTTG
CACTAATTGGAAACGTGTCCTACTAGTACTGGATGGATATTTTACAGACC
CGAATAATATTACTGCTTCGTTAGCTCACGATTTCAATCAAGGATATTTT
CGACGTTTAAGCGATTATACACCTGACGAAATTAATTTACGTTTATCAAC
TTATTACAAATTTTTATTTGCAAGACATCCTTTTGAACGATTAACAGCAG
CTTATAGGAATAAATTCATTTATCAAAATACACAGAACAAATTTTTCAGC
GTCATTTTTGGACAGTTTATAAGACGCAAATACCGTCATCATAATTCGAC
GACTACTAAGAAATCTTCAGTAACTTTTGCAGAGTTTGTACAGTACATTG
TTGACTCGCCTCTGGAGGATAAAGAGTTCTGGAACGAGCATTGGGAACGA
ATAGAGAGATTATGTCTGCCTTGTTTAATACAATATGACTTTATTGGCAA
ATTTGAAACTTTGAAACAAGACGCTGATTTTCTTTTACGGACACTCGATG
TAAATGACTTGGTCAAATTTCCGGACGGCTATAAAGGACATGCTTCGAGT
ACACCATCTTTGATGAGAAATTTATTTGAATCTTTACCGAAGAGGTTACT
GGAGAAATTGTATGAATTGTATAAAATGGATTTCATGCTGTTTGGCTATC
AAAATGGTTTTGAATCCTAGGAATACTTAGTGACGGAAAACTCAGTGGAC
GTGGAGTATGCGGCCGTACAACGTTTACGTAAGAAGGTATTGAAAACGGG
ATGTCATCAACGCAAAGTAGAAGATATTTACCCCCTCAACACTGACTTTA
ACAAAGGAATCAATCCAAGTGCATTTCGTAATATATTGCATTCGAAGCAT
CAACCAAATTCGATGAAAAGCTTTTGACAAATATGCGTTTCGTATCGGTT
CGAAATTTATCCCTGCTTGCATTCATATTGCTCTTATCCTGGGAAGCATG
GAAAGCTGTCATTACTACCGAATTACGTCATCGCGCCATACGGAGAATCA
CGGAAGGTCAGCGACAAACATCAACTTCTGTACTGCATTACACCCAAAGT
GGCTTGCACTAATTGGAAACGTGTCCTACTAGTACTGGATGGATATTTTA
CAGACCCGAATAATATTACTGCTTCGTTAGCTCACGATTTCAATCAAGGA
TATTTTCGACGTTTAAGCGATTATACACCTGACGAAATTAATTTACGTTT
ATCAACTTATTACAAATTTTTATTTGCAAGACATCCTTTTGAACGATTAA
CAGCAGCTTATAGGAATAAATTCATTTATCAAAATACACAGAACAAATTT
TTCAGCGTCATTTTTGGACAGTTTATAAGACGCAAATACCGTCATCATAA
TTCGACGACTACTAAGAAATCTTCAGTAACTTTTGCAGAGTTTGTACAGT
ACATTGTTGACTCGCCTCTGGAGGATAAAGAGTTCTGGAACGAGCATTGG
GAACGAATAGAGAGATTATGTCTGCCTTGTTTAATACAATATGACTTTAT
TGGCAAATTTGAAACTTTGAAACAAGACGCTGATTTTCTTTTACGGACAC
TCGATGTAAATGACTTGGTCAAATTTCCGGACGGCTATAAAGGACATGCT
TCGAGTACACCATCTTTGATGAGAAATTTATTTGAATCTTTACCGAAGAG
GTTACTGGAGAAATTGTATGAATTGTATAAAATGGATTTCATGCTGTTTG
GCTATCAAAATGGTTTTGAATCCTAGGAATACTTAGTGACGGAAAACTCA
GTGGACGTGGAGTATGCGGCCGTACAACGTTTACGTAAGAAGGTATTGAA
AACGGGATGTCATCAACGCAAAGTAGAAGATATTTACCCCCTCAACACTG
ACTTTAACAAAGGAATCAATCCAAGTGCATTTCGTAATATATTGCATTCG
AAGCATCAACCAAATTCGATGAAAAGCTTTTGACAAATATGCGTTTCGTA
TCGGTTCGAAATTTATCCCTGCTTGCATTCATATTGCTCTTATCCTGGGA
AGCATGGAAAGCTGTCATTACTACCGAATTACGTCATCGCGCCATACGGA
GAATCACGGAAGGTCAGCGACAAACATCAACTTCTGTACTGCATTACACC
CAAAGTGGCTTGCACTAATTGGAAACGTGTCCTACTAGTACTGGATGGAT
ATTTTACAGACCCGAATAATATTACTGCTTCGTTAGCTCACGATTTCAAT
CAAGGATATTTTCGACGTTTAAGCGATTATACACCTGACGAAATTAATTT
ACGTTTATCAACTTATTACAAATTTTTATTTGCAAGACATCCTTTTGAAC
GATTAACAGCAGCTTATAGGAATAAATTCATTTATCAAAATACACAGAAC
AAATTTTTCAGCGTCATTTTTGGACAGTTTATAAGACGCAAATACCGTCA
TCATAATTCGACGACTACTAAGAAATCTTCAGTAACTTTTGCAGAGTTTG
TACAGTACATTGTTGACTCGCCTCTGGAGGATAAAGAGTTCTGGAACGAG
CATTGGGAACGAATAGAGAGATTATGTCTGCCTTGTTTAATACAATATGA
CTTTATTGGCAAATTTGAAACTTTGAAACAAGACGCTGATTTTCTTTTAC
GGACACTCGATGTAAATGACTTGGTCAAATTTCCGGACGGCTATAAAGGA
CATGCTTCGAGTACACCATCTTTGATGAGAAATTTATTTGAATCTTTACC
GAAGAGGTTACTGGAGAAATTGTATGAATTGTATAAAATGGATTTCATGC
TGTTTGGCTATCAAAATGGTTTTGAATCCTAGGAATACTTAGTGACGGAA
AACTCAGTGGACGTGGAGTATGCGGCCGTACAACGTTTACGTAAGAAGGT
ATTGAAAACGGGATGTCATCAACGCAAAGTAGAAGATATTTACCCCCTCA
ACACTGACTTTAACAAAGGAATCAATCCAAGTGCATTTCGTAATATATTG
CATTCGAAGCATCAACCAAATTCGATGAAAAGCTTTTGACAAATATGCGT
TTCGTATCGGTTCGAAATTTATCCCTGCTTGCATTCATATTGCTCTTATC
CTGGGAAGCATGGAAAGCTGTCATTACTACCGAATTACGTCATCGCGCCA
TACGGAGAATCACGGAAGGTCAGCGACAAACATCAACTTCTGTACTGCAT
TACACCCAAAGTGGCTTGCACTAATTGGAAACGTGTCCTACTAGTACTGG
ATGGATATTTTACAGACCCGAATAATATTACTGCTTCGTTAGCTCACGAT
TTCAATCAAGGATATTTTCGACGTTTAAGCGATTATACACCTGACGAAAT
TAATTTACGTTTATCAACTTATTACAAATTTTTATTTGCAAGACATCCTT
TTGAACGATTAACAGCAGCTTATAGGAATAAATTCATTTATCAAAATACA
CAGAACAAATTTTTCAGCGTCATTTTTGGACAGTTTATAAGACGCAAATA
CCGTCATCATAATTCGACGACTACTAAGAAATCTTCAGTAACTTTTGCAG
AGTTTGTACAGTACATTGTTGACTCGCCTCTGGAGGATAAAGAGTTCTGG
AACGAGCATTGGGAACGAATAGAGAGATTATGTCTGCCTTGTTTAATACA
ATATGACTTTATTGGCAAATTTGAAACTTTGAAACAAGACGCTGATTTTC
TTTTACGGACACTCGATGTAAATGACTTGGTCAAATTTCCGGACGGCTAT
AAAGGACATGCTTCGAGTACACCATCTTTGATGAGAAATTTATTTGAATC
TTTACCGAAGAGGTTACTGGAGAAATTGTATGAATTGTATAAAATGGATT
TCATGCTGTTTGGCTATCAAAATGGTTTTGAATCCTAGGAATACTTAGTG
ACGGAAAACTCAGTGGACGTGGAGTATGCGGCCGTACAACGTTTACGTAA
GAAGGTATTGAAAACGGGATGTCATCAACGCAAAGTAGAAGATATTTACC
CCCTCAACACTGACTTTAACAAAGGAATCAATCCAAGTGCATTTCGTAAT
ATATTGCATTCGAAGCATCAACCAAATTCGATGAAAAGCTTTTGACAAAT
ATGCGTTTCGTATCGGTTCGAAATTTATCCCTGCTTGCATTCATATTGCT
CTTATCCTGGGAAGCATGGAAAGCTGTCATTACTACCGAATTACGTCATC
GCGCCATACGGAGAATCACGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043157XLOC_043157Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069272-exon-scaffold_496-1575043694:648992..649481TCONS_00069272-exon-scaffold_496-1575043694:648992..649481Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1575043694:647984..648185TCONS_00069272-exon-scaffold_496-1575043694:647984..648185Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1575043694:646007..646050TCONS_00069272-exon-scaffold_496-1575043694:646007..646050Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1575043694:645550..645717TCONS_00069272-exon-scaffold_496-1575043694:645550..645717Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1575043694:643921..645123TCONS_00069272-exon-scaffold_496-1575043694:643921..645123Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1510915933:648992..649481TCONS_00069272-exon-scaffold_496-1510915933:648992..649481Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1510915933:647984..648185TCONS_00069272-exon-scaffold_496-1510915933:647984..648185Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1510915933:646007..646050TCONS_00069272-exon-scaffold_496-1510915933:646007..646050Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1510915933:645550..645717TCONS_00069272-exon-scaffold_496-1510915933:645550..645717Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1510915933:643921..645123TCONS_00069272-exon-scaffold_496-1510915933:643921..645123Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1491911889:648992..649481TCONS_00069272-exon-scaffold_496-1491911889:648992..649481Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1491911889:647984..648185TCONS_00069272-exon-scaffold_496-1491911889:647984..648185Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1491911889:646007..646050TCONS_00069272-exon-scaffold_496-1491911889:646007..646050Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1491911889:645550..645717TCONS_00069272-exon-scaffold_496-1491911889:645550..645717Clytia hemisphaericaexon
TCONS_00069272-exon-scaffold_496-1491911889:643921..645123TCONS_00069272-exon-scaffold_496-1491911889:643921..645123Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069272-proteinTCONS_00069272-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:643921..649481 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.302157	0	0	3.70297	4.83617	1.91197	1.46215	0.0401185	1.20216	4.05628	4.35334	2.81519	5.64178	2.39939	2.24356	0.0934674	0.217646	1.99894	1.498	0	1.0577e-07	0.628355	1.14948	0.283271	0.165546	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005331Sulfotransferase
Vocabulary: Molecular Function
TermDefinition
GO:0008146sulfotransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008146 sulfotransferase activity
Blast
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BLAST of TCONS_00069272 vs. Swiss-Prot (Human)
Match: CHSTD (Carbohydrate sulfotransferase 13 OS=Homo sapiens GN=CHST13 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.012e-51
Identity = 117/282 (41.49%), Postives = 152/282 (53.90%), Query Frame = 2 
Query:  776 AAVQRLRKKVLKTGC--HQRKVEDIYPLNTDFNKGINPSAFRNILVSDKHQLLYCITPKVACTNWKRVLLVLDGYF-TDPNNITASLAHDFNQGYFRRLSDYTPDEINLRLSTYYKFLFARHPFERLTAAYRNKFIYQNTQNKFFSVIFGQFI--RRKYRHHNSTTTKKSSVTFAEFVQYIVDSPLEDKEFWNEHWERIERLCLPCLIQYDFIGKFETLKQDADFLLRTLDVNDLV-KFPDGYKGHASSTPSLMRNLFESLPKRXXXXXXXXXXMDFMLFGY 1603
            A V R R+ +L + C  H R+            + + P   R++LV D H LLYC  PKVACTNWKRVLL L G    DP  I+A  AH    G    L+D++P EIN RL  Y  FLF R PFERL +AYRNK       +  F   +G  I  R + R       +   V FAEF+ Y++D     +E +NEHWER   LC PC ++YD +GKFETL +DA F+L     +DL    P   +G A+S   L   LF  +      +L++LYKMDF+LF Y
Sbjct:   67 AKVHRQRRDLLNSACSRHSRR-----------QRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGDPRAISAQEAH--APGRLPSLADFSPAEINRRLRAYLAFLFVREPFERLASAYRNKLA--RPYSAAFQRRYGARIVQRLRPRALPDARARGHDVRFAEFLAYLLDPRTRREEPFNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAGASDLSFPGPPRPRGAAASR-DLAARLFRDISPFYQRRLFDLYKMDFLLFNY 332
The following BLAST results are available for this feature:
BLAST of TCONS_00069272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHSTD1.012e-5141.49Carbohydrate sulfotransferase 13 OS=Homo sapiens G... [more]
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