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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069279 ID=TCONS_00069279|Name=TCONS_00069279|organism=Clytia hemisphaerica|type=transcript|length=2305bp
ACGCTCCATGTATTTATTTTCTCTGATTTGCTACTGTATCACCATGTACA
TGTAGGGATGATCAGTTACAAAAAAGTAAACATCAAAGATTATGTTGAAA
ATAAATTAAAATTCAGAAGTCATGTTTTATACACCGCTGTAAAAAAAGTG
ATGTGTGTGTATGTGATTTTAAGGGGTATCCACAGCGGTACCAAAAAATT
TCTCCTGTCAATAACGCATCCATCAACCTTTTCGAAATCATAGCTCACAC
CATCACCAGATTTTTATAATTGATGATCTTATCGGATTTTTTTGATTTTT
TTTAAAAAAGCGATGCATTGTGGGATTGTTTCGGGAGTATTACAATTGAA
TTCCCTCGAGGAATTCCTAAGAGATTTCTATTGTCAATAAAAATCAAGCC
GAAATATTCATAGGTTTAAGCACAAGGGCTATTGAACCCGAATGCGGGTG
CGGCACATCAAAGGCCGACCATCATTcctctccgatgggaaattggcccg
ctcctttagagctttagcgtgggcggccgccaaaccgccatcggaatatc
agataattgGTCggtgtgcttttcacggtaggtGATTATAGTTTCCATTC
TGACGTATTGTTAGatttattaaaaatattaattaatTTTACGCCGTTCA
ACTCTGAACATCTTATCCTCTTAATACAGCATAATAAGGAAAAAATGGTT
TAAGTATCTCAtattaaaaaagtctttaagcaaaacttGATGTCAAGATC
GATAGCACTTTCATGACATCAATAGACTATGTTCTACAAAAGCTTAAACA
AGAGGGatacaaaatttgtgtaggaagagcagatttttatgtcACGGTAA
TTAcctttttatattataaatatAGAACTACtaagtcataaaaatctgct
ctcctacacgaACTTTGCACCCCTCTTGTCTACACTATATACTGTTCTAG
AAAGACGTTTTACGGTTTCTATAACACAAACAGAGTGATACTCTAAATAC
ATATATTTCGTTATCCCAAACTTCGAAACAGATAAAGACCGTACAAAAAG
GATAAACAAGAATGCGTTTGATTAGACTCGGTCTACTAGTTCCCATTGGT
AAAGCAACTCGCATGAATTTACCGAATCGAATCGTTGATAAATGTCACAA
ATCGAATATACAAATTATCGAAATAAATATCGATAAAGATATCGAATCAC
AAGGACCTTTCGATTTCGTTTTACATAAAGTACTCGATTTTTATAACGAG
CATAAAGATGAACCAGAAATCGCACGATGGAAAATCGATAAATTCGTATC
GTACACGAAAGCATATCCTGAAACGATCATCATCGATAATATGGATTTTT
GTTGGCGATTAACCAATCGAAAACTGATGATCGATTTAATCGAGCATTGC
ATCTTCAAGACTGGGAACCGAAGTGTATTCTTACCAAAGACTTTAGATAT
CACTGAAAATATCACCGATCTGGACCTAGAAACGACcgttattgaaaata
aaatacagTTCCCGGTGGTTGTCAAGCCTCATTCTGCATATTTTGATGAC
GGTTCACATTTAATGAGCCTAGTGTTCAATCATGAGGgtttaaaagactt
taagaaGCCGTACCTTGTTCAAGAATTCTGTGATCATGGAGCTGTGTTAT
ACAAAGTCTTTGTTATTGGCAACAAGTACCATATATGTGAAAGACCATCT
GTGAAGAATCTGGTTGTTGAAGATTCCTTGGAAATCAATTGTAAGCAACC
TGAAACCAATATTGAATTCGATTCTTTTAATATCTCTAAATTGGGTCAAT
GTTTTAATAAAGTTTTACACAGCGAAGATCCGAACCACCAAACATGGTTT
TCTTCAGACCAAAAGAGTTCTCTCTTAGATAAGGAAATCATCGAAGAGAT
TATTTTAAGAATCAAGAAATATTCAGGATTGAATTTGTatggttttgata
ttttgatggAAGAGCATACTGGGAATTATGCCTTGATTGATATCAACCAA
TTCCCCTCCTATAAAGGCATTGACTCTTCACATTTTGCATATGATTTAGT
AGAATTATTAGAAACTCTTTAGATTTCTGAAAATGATATATGTGTATGTT
CTAGGAGtactttgaaaatattatctGTAGGTTCTAAGGTTATTTCTATG
AAGTTTGAAGAAAATTCGACGAGGAAGTCTATTAAAATTACGCGGGaagc
acacccctgtctcagtaaacCGGTAGAGTTTAAAGCTCACCGGGGTGGCT
AAGAAAATAACAGGATTTCACCGGGACAGACTTTTGACTGAATAAagtcg
ccggg Run BLAST on NCBI protein sequence of TCONS_00069279-protein >TCONS_00069279-protein ID=TCONS_00069279-protein|Name=TCONS_00069279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MRLIRLGLLVPIGKATRMNLPNRIVDKCHKSNIQIIEINIDKDIESQGPF
DFVLHKVLDFYNEHKDEPEIARWKIDKFVSYTKAYPETIIIDNMDFCWRL
TNRKLMIDLIEHCIFKTGNRSVFLPKTLDITENITDLDLETTVIENKIQF
PVVVKPHSAYFDDGSHLMSLVFNHEGLKDFKKPYLVQEFCDHGAVLYKVF
VIGNKYHICERPSVKNLVVEDSLEINCKQPETNIEFDSFNISKLGQCFNK
VLHSEDPNHQTWFSSDQKSSLLDKEIIEEIILRIKKYSGLNLYGFDILME
EHTGNYALIDINQFPSYKGIDSSHFAYDLVELLETL Run BLAST on NCBI transcript from alignment at scaffold_496:22456..24760 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069279 ID=TCONS_00069279|Name=TCONS_00069279|organism=Clytia hemisphaerica|type=transcript|length=2305bp|location=Sequence derived from alignment at scaffold_496:22456..24760 (Clytia hemisphaerica)
cccggcgactTTATTCAGTCAAAAGTCTGTCCCGGTGAAATCCTGTTATT
TTCTTAGCCACCCCGGTGAGCTTTAAACTCTACCGgtttactgagacagg
ggtgtgcttCCCGCGTAATTTTAATAGACTTCCTCGTCGAATTTTCTTCA
AACTTCATAGAAATAACCTTAGAACCTACagataatattttcaaagtaCT
CCTAGAACATACACATATATCATTTTCAGAAATCTAAAGAGTTTCTAATA
ATTCTACTAAATCATATGCAAAATGTGAAGAGTCAATGCCTTTATAGGAG
GGGAATTGGTTGATATCAATCAAGGCATAATTCCCAGTATGCTCTTccat
caaaatatcaaaaccatACAAATTCAATCCTGAATATTTCTTGATTCTTA
AAATAATCTCTTCGATGATTTCCTTATCTAAGAGAGAACTCTTTTGGTCT
GAAGAAAACCATGTTTGGTGGTTCGGATCTTCGCTGTGTAAAACTTTATT
AAAACATTGACCCAATTTAGAGATATTAAAAGAATCGAATTCAATATTGG
TTTCAGGTTGCTTACAATTGATTTCCAAGGAATCTTCAACAACCAGATTC
TTCACAGATGGTCTTTCACATATATGGTACTTGTTGCCAATAACAAAGAC
TTTGTATAACACAGCTCCATGATCACAGAATTCTTGAACAAGGTACGGCt
tcttaaagtcttttaaacCCTCATGATTGAACACTAGGCTCATTAAATGT
GAACCGTCATCAAAATATGCAGAATGAGGCTTGACAACCACCGGGAActg
tattttattttcaataacgGTCGTTTCTAGGTCCAGATCGGTGATATTTT
CAGTGATATCTAAAGTCTTTGGTAAGAATACACTTCGGTTCCCAGTCTTG
AAGATGCAATGCTCGATTAAATCGATCATCAGTTTTCGATTGGTTAATCG
CCAACAAAAATCCATATTATCGATGATGATCGTTTCAGGATATGCTTTCG
TGTACGATACGAATTTATCGATTTTCCATCGTGCGATTTCTGGTTCATCT
TTATGCTCGTTATAAAAATCGAGTACTTTATGTAAAACGAAATCGAAAGG
TCCTTGTGATTCGATATCTTTATCGATATTTATTTCGATAATTTGTATAT
TCGATTTGTGACATTTATCAACGATTCGATTCGGTAAATTCATGCGAGTT
GCTTTACCAATGGGAACTAGTAGACCGAGTCTAATCAAACGCATTCTTGT
TTATCCTTTTTGTACGGTCTTTATCTGTTTCGAAGTTTGGGATAACGAAA
TATATGTATTTAGAGTATCACTCTGTTTGTGTTATAGAAACCGTAAAACG
TCTTTCTAGAACAGTATATAGTGTAGACAAGAGGGGTGCAAAGTtcgtgt
aggagagcagatttttatgacttaGTAGTTCTatatttataatataaaaa
ggTAATTACCGTgacataaaaatctgctcttcctacacaaattttgtatC
CCTCTTGTTTAAGCTTTTGTAGAACATAGTCTATTGATGTCATGAAAGTG
CTATCGATCTTGACATCaagttttgcttaaagacttttttaataTGAGAT
ACTTAAACCATTTTTTCCTTATTATGCTGTATTAAGAGGATAAGATGTTC
AGAGTTGAACGGCGTAAAattaattaatatttttaataaatCTAACAATA
CGTCAGAATGGAAACTATAATCacctaccgtgaaaagcacaccGACcaat
tatctgatattccgatggcggtttggcggccgcccacgctaaagctctaa
aggagcgggccaatttcccatcggagaggAATGATGGTCGGCCTTTGATG
TGCCGCACCCGCATTCGGGTTCAATAGCCCTTGTGCTTAAACCTATGAAT
ATTTCGGCTTGATTTTTATTGACAATAGAAATCTCTTAGGAATTCCTCGA
GGGAATTCAATTGTAATACTCCCGAAACAATCCCACAATGCATCGCTTTT
TTAAAAAAAATCAAAAAAATCCGATAAGATCATCAATTATAAAAATCTGG
TGATGGTGTGAGCTATGATTTCGAAAAGGTTGATGGATGCGTTATTGACA
GGAGAAATTTTTTGGTACCGCTGTGGATACCCCTTAAAATCACATACACA
CACATCACTTTTTTTACAGCGGTGTATAAAACATGACTTCTGAATTTTAA
TTTATTTTCAACATAATCTTTGATGTTTACTTTTTTGTAACTGATCATCC
CTACATGTACATGGTGATACAGTAGCAAATCAGAGAAAATAAATACATGG
AGCGT Coding sequence (CDS) from alignment at scaffold_496:22456..24760 >TCONS_00069279 ID=TCONS_00069279|Name=TCONS_00069279|organism=Clytia hemisphaerica|type=CDS|length=1011bp|location=Sequence derived from alignment at scaffold_496:22456..24760 (Clytia hemisphaerica)
CTAAAGAGTTTCTAATAATTCTACTAAATCATATGCAAAATGTGAAGAGT
CAATGCCTTTATAGGAGGGGAATTGGTTGATATCAATCAAGGCATAATTC
CCAGTATGCTCTTccatcaaaatatcaaaaccatACAAATTCAATCCTGA
ATATTTCTTGATTCTTAAAATAATCTCTTCGATGATTTCCTTATCTAAGA
GAGAACTCTTTTGGTCTGAAGAAAACCATGTTTGGTGGTTCGGATCTTCG
CTGTGTAAAACTTTATTAAAACATTGACCCAATTTAGAGATATTAAAAGA
ATCGAATTCAATATTGGTTTCAGGTTGCTTACAATTGATTTCCAAGGAAT
CTTCAACAACCAGATTCTTCACAGATGGTCTTTCACATATATGGTACTTG
TTGCCAATAACAAAGACTTTGTATAACACAGCTCCATGATCACAGAATTC
TTGAACAAGGTACGGCttcttaaagtcttttaaacCCTCATGATTGAACA
CTAGGCTCATTAAATGTGAACCGTCATCAAAATATGCAGAATGAGGCTTG
ACAACCACCGGGAActgtattttattttcaataacgGTCGTTTCTAGGTC
CAGATCGGTGATATTTTCAGTGATATCTAAAGTCTTTGGTAAGAATACAC
TTCGGTTCCCAGTCTTGAAGATGCAATGCTCGATTAAATCGATCATCAGT
TTTCGATTGGTTAATCGCCAACAAAAATCCATATTATCGATGATGATCGT
TTCAGGATATGCTTTCGTGTACGATACGAATTTATCGATTTTCCATCGTG
CGATTTCTGGTTCATCTTTATGCTCGTTATAAAAATCGAGTACTTTATGT
AAAACGAAATCGAAAGGTCCTTGTGATTCGATATCTTTATCGATATTTAT
TTCGATAATTTGTATATTCGATTTGTGACATTTATCAACGATTCGATTCG
GTAAATTCATGCGAGTTGCTTTACCAATGGGAACTAGTAGACCGAGTCTA
ATCAAACGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069279-exon-scaffold_496-1491911889:22456..24760 | TCONS_00069279-exon-scaffold_496-1491911889:22456..24760 | Clytia hemisphaerica | exon |
| TCONS_00069279-exon-scaffold_496-1510915933:22456..24760 | TCONS_00069279-exon-scaffold_496-1510915933:22456..24760 | Clytia hemisphaerica | exon |
| TCONS_00069279-exon-scaffold_496-1575043694:22456..24760 | TCONS_00069279-exon-scaffold_496-1575043694:22456..24760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:22456..24760 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008656 | Inositol_tetrakis-P_1-kinase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0052726 | inositol-1,3,4-trisphosphate 5-kinase activity |
| GO:0052725 | inositol-1,3,4-trisphosphate 6-kinase activity |
| GO:0005524 | ATP binding |
| GO:0000287 | magnesium ion binding |
| GO:0047325 | inositol tetrakisphosphate 1-kinase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0032957 | inositol trisphosphate metabolic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0032957 |
inositol trisphosphate metabolic process |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0052726 |
inositol-1,3,4-trisphosphate 5-kinase activity |
| molecular_function |
GO:0052725 |
inositol-1,3,4-trisphosphate 6-kinase activity |
| molecular_function |
GO:0047325 |
inositol tetrakisphosphate 1-kinase activity |
| molecular_function |
GO:0000287 |
magnesium ion binding |
Blast
BLAST of TCONS_00069279 vs. Swiss-Prot (Human)
Match: ITPK1 (Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 4.504e-31 Identity = 90/290 (31.03%), Postives = 144/290 (49.66%), Query Frame = 3
Query: 1200 QGPFDFVLHKVLDFYNEHKDEPEIARWKIDKFVSYTKAYPETIIIDNMDFCWRLTNRKLMIDLIEHCIFKTGNRSVFLPKTLDITENITDLDLETTVIENKIQFPVVVKPHSAYFDDGSHLMSLVFNHEGLKDFKKPYLVQEFCDHGAVLYKVFVIGNKYHICERPSVKNLVVEDSLEINCKQPETNIEFDSFNISKLGQCFNKVLHSEDPNHQTWFSSDQKSSXXXXXXXXXXXXXXXXYSGLNLYGFDILMEEHTGNYALIDINQFPSYKGIDSSHFAYDLVELLETL 2069
QGP D ++HK+ D E + + +F Y A+PETI++D + L +R +LI + + P +++T D D + +N + FP + K A+ + SH M++VFN EGL + P +VQ F +H AVLYKVFV+G Y + +RPS+KN S +I F+S N+SK + VL D + ++ S + + + G++L+G DI++ TG +A+IDIN FP Y+G+ S F DL+ + T+
Sbjct: 50 QGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGD-DTMRLLEKNGLTFPFICKTRVAHGTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTS-------DRESIFFNSHNVSKPES--SSVLTELDKIEGVF----ERPSDEVIRELSRALRQAL---GVSLFGIDIIINNQTGQHAVIDINAFPGYEGV--SEFFTDLLNHIATV 319
The following BLAST results are available for this feature:
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