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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069281 ID=TCONS_00069281|Name=TCONS_00069281|organism=Clytia hemisphaerica|type=transcript|length=1693bp
caaacgcaaacttatttagattaaaaataaaaacctttAACAATTTGACt
ttcattatatactttcagaAATAAATTTCATCTTTACAAAACTAAAATGG
GGGATACTGAAATCAAGGAAATACCAAGGCTTGGATCATGGTTTAAACTT
ccaaatttattgaaaatgaagaacgaAGGCAGATTGTTCTTCCAAGAGCT
TTTCAACGAGTAAGATGGAAATGTAATCAAAGTGGAACTTATGGAATCGA
CAATCATGGTGCGTGACAGTATCGCCGCCAAATACCTTTTTGATCCAGAG
TATATCACCAAAGGCTGCATTTTAGGATTCGCAGGTGTTTCATACAACCA
TTGCATGACAAAGGGTAGATATCCGTCCATATTTTGTAACGGTGCTGATC
ATGacgaaaagaaagaaaattcattgaAGGTGTTTCACCAACGCTTTGGA
GAAATCAAGGTTGCTGATATGAACAAAATTGTTCAAGGAGGGTTCGAATC
TTTCAATGATTTGAAAGAAGGAGATGATTTTGAAGTTGCTGTTGATAAAA
TGGCTTTTCATTTTAATGCCTTCCTAGTTCTTGGGAAGGTGATACCTGAC
CATGCTAACTATAGGGATTGGTTTGAACGGTGTATTCGACCAGATTTGAA
ACAAAAACTATTATGGCCGTTCCTATACAAGCATGACGAGAGGGTCACCG
AGGAAGTCTTTCGCCAAGTCAGCGAGACACCAACCATTAAAAACCTTGAG
AAAATAGCACCTAACATGACTGATACAAAAGAAGGGAGCACTCTTGATTT
GATGTTTAACACTTACTTCAATGGTTCCCCTTTGCTTGGCAAATATGCTA
TTTCATGCTTAGCTCGTTATGTTGATTCATTGACTGATGAAGAACGCCAG
AGTTTGAAAGCAGAAGCTGATCACTTCTTGGAACAAGATCCTTCACAGTA
TGACGAATCATTCGAAGGATTAGAATTGATCAATTCATTTGTACTTGAAG
TTTTGCGATTGAATCCGGTACATATTACCGGAACTTATGGCAAAGCTAGA
AAGGACTTTGTAATGGAGTCAAAAACAGGGAGGTATCAAATCTACAAAGA
TGACTTGATCACTGATTGTGTTATGGAGATGCATAGAGATCCAAGGGTCT
TTGAGGAACCATCGAAGGTTAAATTGACACGTGACAACCAGAAGGTAAAG
GAGAACCTTGTCAACTTTGGGGGACCATGGTTACAAGAATCTACATCTAC
TAATCGCAAATGTCCTGGTCAAAACATGATGTATATGGGGTTGAAATTGT
TCGTCATCCATTTAACGCGATCTACGTTTGACGTTAAATCAGATCTTACA
TACACCGGTAAAAATCCAAAACGAGGCTACGGTACTGATATCCCGGTAGT
GATGAAGAAATTTGCTTATAATAAATAACTTGCAGGTGAAGAAATTGAAC
AGAATGCATTCAAACTTTATAAACGTTTTGATAGCTCGTAGACAGGATAC
TTATTACAAAAAGGGAAACCTCGTTAGAGGGATAACCACGATATCCagct
ttttgtcaataaatttagCTTATAATAAAACAAACACTATAAACACTGTA
CGAATTaatattttttagttttcttaGACTGTTATAAAAGCTTCTTGAAT
ATAGCAATTAGAATCCAATACTGTTCTCGTTATTCGAGCAAAA Run BLAST on NCBI protein sequence of TCONS_00069281-protein >TCONS_00069281-protein ID=TCONS_00069281-protein|Name=TCONS_00069281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
MESTIMVRDSIAAKYLFDPEYITKGCILGFAGVSYNHCMTKGRYPSIFCN
GADHDEKKENSLKVFHQRFGEIKVADMNKIVQGGFESFNDLKEGDDFEVA
VDKMAFHFNAFLVLGKVIPDHANYRDWFERCIRPDLKQKLLWPFLYKHDE
RVTEEVFRQVSETPTIKNLEKIAPNMTDTKEGSTLDLMFNTYFNGSPLLG
KYAISCLARYVDSLTDEERQSLKAEADHFLEQDPSQYDESFEGLELINSF
VLEVLRLNPVHITGTYGKARKDFVMESKTGRYQIYKDDLITDCVMEMHRD
PRVFEEPSKVKLTRDNQKVKENLVNFGGPWLQESTSTNRKCPGQNMMYMG
LKLFVIHLTRSTFDVKSDLTYTGKNPKRGYGTDIPVVMKKFAYNK Run BLAST on NCBI transcript from alignment at scaffold_496:30532..32224 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069281 ID=TCONS_00069281|Name=TCONS_00069281|organism=Clytia hemisphaerica|type=transcript|length=1693bp|location=Sequence derived from alignment at scaffold_496:30532..32224 (Clytia hemisphaerica)
TTTTGCTCGAATAACGAGAACAGTATTGGATTCTAATTGCTATATTCAAG
AAGCTTTTATAACAGTCtaagaaaactaaaaaatattAATTCGTACAGTG
TTTATAGTGTTTGTTTTATTATAAGctaaatttattgacaaaaagctGGA
TATCGTGGTTATCCCTCTAACGAGGTTTCCCTTTTTGTAATAAGTATCCT
GTCTACGAGCTATCAAAACGTTTATAAAGTTTGAATGCATTCTGTTCAAT
TTCTTCACCTGCAAGTTATTTATTATAAGCAAATTTCTTCATCACTACCG
GGATATCAGTACCGTAGCCTCGTTTTGGATTTTTACCGGTGTATGTAAGA
TCTGATTTAACGTCAAACGTAGATCGCGTTAAATGGATGACGAACAATTT
CAACCCCATATACATCATGTTTTGACCAGGACATTTGCGATTAGTAGATG
TAGATTCTTGTAACCATGGTCCCCCAAAGTTGACAAGGTTCTCCTTTACC
TTCTGGTTGTCACGTGTCAATTTAACCTTCGATGGTTCCTCAAAGACCCT
TGGATCTCTATGCATCTCCATAACACAATCAGTGATCAAGTCATCTTTGT
AGATTTGATACCTCCCTGTTTTTGACTCCATTACAAAGTCCTTTCTAGCT
TTGCCATAAGTTCCGGTAATATGTACCGGATTCAATCGCAAAACTTCAAG
TACAAATGAATTGATCAATTCTAATCCTTCGAATGATTCGTCATACTGTG
AAGGATCTTGTTCCAAGAAGTGATCAGCTTCTGCTTTCAAACTCTGGCGT
TCTTCATCAGTCAATGAATCAACATAACGAGCTAAGCATGAAATAGCATA
TTTGCCAAGCAAAGGGGAACCATTGAAGTAAGTGTTAAACATCAAATCAA
GAGTGCTCCCTTCTTTTGTATCAGTCATGTTAGGTGCTATTTTCTCAAGG
TTTTTAATGGTTGGTGTCTCGCTGACTTGGCGAAAGACTTCCTCGGTGAC
CCTCTCGTCATGCTTGTATAGGAACGGCCATAATAGTTTTTGTTTCAAAT
CTGGTCGAATACACCGTTCAAACCAATCCCTATAGTTAGCATGGTCAGGT
ATCACCTTCCCAAGAACTAGGAAGGCATTAAAATGAAAAGCCATTTTATC
AACAGCAACTTCAAAATCATCTCCTTCTTTCAAATCATTGAAAGATTCGA
ACCCTCCTTGAACAATTTTGTTCATATCAGCAACCTTGATTTCTCCAAAG
CGTTGGTGAAACACCTtcaatgaattttctttcttttcgtCATGATCAGC
ACCGTTACAAAATATGGACGGATATCTACCCTTTGTCATGCAATGGTTGT
ATGAAACACCTGCGAATCCTAAAATGCAGCCTTTGGTGATATACTCTGGA
TCAAAAAGGTATTTGGCGGCGATACTGTCACGCACCATGATTGTCGATTC
CATAAGTTCCACTTTGATTACATTTCCATCTTACTCGTTGAAAAGCTCTT
GGAAGAACAATCTGCCTtcgttcttcattttcaataaatttggAAGTTTA
AACCATGATCCAAGCCTTGGTATTTCCTTGATTTCAGTATCCCCCATTTT
AGTTTTGTAAAGATGAAATTTATTtctgaaagtatataatgaaaGTCAAA
TTGTTaaaggtttttatttttaatctaaataagtttgcgtttg Coding sequence (CDS) from alignment at scaffold_496:30532..32224 >TCONS_00069281 ID=TCONS_00069281|Name=TCONS_00069281|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_496:30532..32224 (Clytia hemisphaerica)
TTATTTATTATAAGCAAATTTCTTCATCACTACCGGGATATCAGTACCGT
AGCCTCGTTTTGGATTTTTACCGGTGTATGTAAGATCTGATTTAACGTCA
AACGTAGATCGCGTTAAATGGATGACGAACAATTTCAACCCCATATACAT
CATGTTTTGACCAGGACATTTGCGATTAGTAGATGTAGATTCTTGTAACC
ATGGTCCCCCAAAGTTGACAAGGTTCTCCTTTACCTTCTGGTTGTCACGT
GTCAATTTAACCTTCGATGGTTCCTCAAAGACCCTTGGATCTCTATGCAT
CTCCATAACACAATCAGTGATCAAGTCATCTTTGTAGATTTGATACCTCC
CTGTTTTTGACTCCATTACAAAGTCCTTTCTAGCTTTGCCATAAGTTCCG
GTAATATGTACCGGATTCAATCGCAAAACTTCAAGTACAAATGAATTGAT
CAATTCTAATCCTTCGAATGATTCGTCATACTGTGAAGGATCTTGTTCCA
AGAAGTGATCAGCTTCTGCTTTCAAACTCTGGCGTTCTTCATCAGTCAAT
GAATCAACATAACGAGCTAAGCATGAAATAGCATATTTGCCAAGCAAAGG
GGAACCATTGAAGTAAGTGTTAAACATCAAATCAAGAGTGCTCCCTTCTT
TTGTATCAGTCATGTTAGGTGCTATTTTCTCAAGGTTTTTAATGGTTGGT
GTCTCGCTGACTTGGCGAAAGACTTCCTCGGTGACCCTCTCGTCATGCTT
GTATAGGAACGGCCATAATAGTTTTTGTTTCAAATCTGGTCGAATACACC
GTTCAAACCAATCCCTATAGTTAGCATGGTCAGGTATCACCTTCCCAAGA
ACTAGGAAGGCATTAAAATGAAAAGCCATTTTATCAACAGCAACTTCAAA
ATCATCTCCTTCTTTCAAATCATTGAAAGATTCGAACCCTCCTTGAACAA
TTTTGTTCATATCAGCAACCTTGATTTCTCCAAAGCGTTGGTGAAACACC
TtcaatgaattttctttcttttcgtCATGATCAGCACCGTTACAAAATAT
GGACGGATATCTACCCTTTGTCATGCAATGGTTGTATGAAACACCTGCGA
ATCCTAAAATGCAGCCTTTGGTGATATACTCTGGATCAAAAAGGTATTTG
GCGGCGATACTGTCACGCACCATGATTGTCGATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069281-exon-scaffold_496-1491911889:30532..32224 | TCONS_00069281-exon-scaffold_496-1491911889:30532..32224 | Clytia hemisphaerica | exon |
| TCONS_00069281-exon-scaffold_496-1510915933:30532..32224 | TCONS_00069281-exon-scaffold_496-1510915933:30532..32224 | Clytia hemisphaerica | exon |
| TCONS_00069281-exon-scaffold_496-1575043694:30532..32224 | TCONS_00069281-exon-scaffold_496-1575043694:30532..32224 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:30532..32224 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| GO:0020037 | heme binding |
| GO:0004497 | monooxygenase activity |
| GO:0005506 | iron ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0004497 |
monooxygenase activity |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
The following BLAST results are available for this feature:
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