TCONS_00069287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069287
Unique NameTCONS_00069287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069287 ID=TCONS_00069287|Name=TCONS_00069287|organism=Clytia hemisphaerica|type=transcript|length=429bp
GTCGATTTTCAAAGCCAAAGATGTTGTTGACGCACCATTTGTCATTTTGG
TTGGGAAAGTTGGAACCGGAAAATCAACAATCGTTGAAAAAGTCACTGGT
GTAAAAGGTCGAAAATCGAAGTCTTCAGAAAGTTTTACAACAGAAAGTGA
ATACTTTTGGGCAAAAGACAAAAGTCTTTTGATAGCCGATAGACCTGGCA
CAAATTCCCGTAAAGGCAGATTAGAACACAATCTAGAAGTTGCATCAGCC
TTCAATTTTAGACCAGTTTCAAAGGTTTTTGTTGTTGTCAAAGCTGACAT
TCGTTTAGACCAAACAATAGATGATGTCAACAGTTTTTGTGAAGCCTTCC
AAACGATTCCAGATGAGACTCTTGGAGTTTTAGTGACACATATGGATGTG
GATAAGGAGTGGACCCAAAATGATATGAT
Run BLAST on NCBI

protein sequence of TCONS_00069287-protein

>TCONS_00069287-protein ID=TCONS_00069287-protein|Name=TCONS_00069287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
SIFKAKDVVDAPFVILVGKVGTGKSTIVEKVTGVKGRKSKSSESFTTESE
YFWAKDKSLLIADRPGTNSRKGRLEHNLEVASAFNFRPVSKVFVVVKADI
RLDQTIDDVNSFCEAFQTIPDETLGVLVTHMDVDKEWTQNDM
Run BLAST on NCBI

transcript from alignment at scaffold_496:86024..86452

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069287 ID=TCONS_00069287|Name=TCONS_00069287|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at scaffold_496:86024..86452 (Clytia hemisphaerica)
ATCATATCATTTTGGGTCCACTCCTTATCCACATCCATATGTGTCACTAA
AACTCCAAGAGTCTCATCTGGAATCGTTTGGAAGGCTTCACAAAAACTGT
TGACATCATCTATTGTTTGGTCTAAACGAATGTCAGCTTTGACAACAACA
AAAACCTTTGAAACTGGTCTAAAATTGAAGGCTGATGCAACTTCTAGATT
GTGTTCTAATCTGCCTTTACGGGAATTTGTGCCAGGTCTATCGGCTATCA
AAAGACTTTTGTCTTTTGCCCAAAAGTATTCACTTTCTGTTGTAAAACTT
TCTGAAGACTTCGATTTTCGACCTTTTACACCAGTGACTTTTTCAACGAT
TGTTGATTTTCCGGTTCCAACTTTCCCAACCAAAATGACAAATGGTGCGT
CAACAACATCTTTGGCTTTGAAAATCGAC

Coding sequence (CDS) from alignment at scaffold_496:86024..86452

>TCONS_00069287 ID=TCONS_00069287|Name=TCONS_00069287|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_496:86024..86452 (Clytia hemisphaerica)
CATATCATTTTGGGTCCACTCCTTATCCACATCCATATGTGTCACTAAAA
CTCCAAGAGTCTCATCTGGAATCGTTTGGAAGGCTTCACAAAAACTGTTG
ACATCATCTATTGTTTGGTCTAAACGAATGTCAGCTTTGACAACAACAAA
AACCTTTGAAACTGGTCTAAAATTGAAGGCTGATGCAACTTCTAGATTGT
GTTCTAATCTGCCTTTACGGGAATTTGTGCCAGGTCTATCGGCTATCAAA
AGACTTTTGTCTTTTGCCCAAAAGTATTCACTTTCTGTTGTAAAACTTTC
TGAAGACTTCGATTTTCGACCTTTTACACCAGTGACTTTTTCAACGATTG
TTGATTTTCCGGTTCCAACTTTCCCAACCAAAATGACAAATGGTGCGTCA
ACAACATCTTTGGCTTTGAAAATCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043170XLOC_043170Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069287-proteinTCONS_00069287-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069287-exon-scaffold_496-1491911889:86024..86452TCONS_00069287-exon-scaffold_496-1491911889:86024..86452Clytia hemisphaericaexon
TCONS_00069287-exon-scaffold_496-1510915933:86024..86452TCONS_00069287-exon-scaffold_496-1510915933:86024..86452Clytia hemisphaericaexon
TCONS_00069287-exon-scaffold_496-1575043694:86024..86452TCONS_00069287-exon-scaffold_496-1575043694:86024..86452Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:86024..86452 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.107251	0	0	0	0.121059	0	3.94279	3.40831	0	0	0.1849	0.168101	0	0	0.221123	0.235988	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006073GTP_binding_domain
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005525 GTP binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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