|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069296 ID=TCONS_00069296|Name=TCONS_00069296|organism=Clytia hemisphaerica|type=transcript|length=1492bp
tttattttcagaattGTATGAATTTCGAATATTACAACGATGATGCATAC
TTAACATCACAAGATggtggttttgaaaatttcgatgaTGAAGTCTTATT
CAATGAATTGCAAGCAAACGGTGGCGGTGGAAGGACGAACCATGGTTATC
AACCTTCGCAAGTTAACATGATGAACGGAAGTGTCGCATATGTACCATGA
TGAACGAGAGGATTGGGGTCAAGTCTACCAGGGTagaatgacgtcagttt
ccttTATCTGTGATTGGCCTAAAATGACGAGATATAACCctgatcaaatc
aaaaccttTCGACGCAAAGTTTGGCAGGTGTTTGATTGGCAAATATTATT
GAGTGTGTATCACTGATGGGAATGGTAAAATGAATATATTCGTACGGAAA
TCAGTTTCGATGGAAACGACTATACTCACATAGAAACCAAAAGAGTGCAT
TTATATGCACAAGTCTGAGAACGTTATTTGGGTGCATTGTGACTGATGCG
AACTGATACACAGATTTCTAGAAGAGGAAGCTACAGGTGAAGTCTCTATA
GCTCAAACCCTCAAGGGTAACAAACATttgttaaagagactctactgtat
aaaGGAGATGAAGTCTGTTTTATTGATTCGGTGTGGCATTCTATAGACTA
TTTGGAATCAGGATTTGTATACGAATCGAATCTTCTATCGGTAATATCTT
TGAGATCTTgtgatagattttactttcgaGCCAGCGTTCACACtatttgg
atgggaaataagtgaatacacatttttttttaataagcaacccTAATTTT
CGGCTTAGGGCTGGAGCTGCTAAGTATTTTTACGAATTTTGGCTAAAAAA
TTACTTATGAATTTCTAGCCAAAAATGCCTAGCAACttaatttttgactt
ttatctCGTTTTATGTCCAAAATACCTCAAATTTGGTATTCAAATACCAT
CGGTACACATTTTAATCTCTGTTCACAGTGGCTCTATGTGGAAACAATAT
TCTTCAGCTGCCTAAAAGCTTTAGAATTTTTCGGAGCAAGCCAATAtatg
ttgttattattattaatgcCAAATAGTGCCGGAAATTCCTCTTTTTTTAG
GGATTTTTGGTTGCTTTCCCGATTCATGCTCAGTTTCAGAACTAGGTTAC
TAAGGCCAAATTACTTAATTCTTTTGCCATTCTCAGGGATGGAGCCTTAG
CTACTCGATAAttgattattaaaaaaaatatgtacctTTCCTTATTCAAG
AGATTCAACTCTAGCACTTCGGACTAAAATCAATGCACAGAACTGTAATA
CGAATCTAAAAATGTTAGTCGTCACCCCCTCCCCCCACGCGAAAATCCAT
GTGAATCAGATTTCATCGAGGTCGTCTATTGTCTATTCAAATATTTCtag
tcttttcaaaaaataatacaCAATAATAGGGTTTATactaaatttgtaaa
atatttatttatatatacATTTATGATTTAATTTATTGTAAG Run BLAST on NCBI transcript from alignment at scaffold_496:290404..291895 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069296 ID=TCONS_00069296|Name=TCONS_00069296|organism=Clytia hemisphaerica|type=transcript|length=1492bp|location=Sequence derived from alignment at scaffold_496:290404..291895 (Clytia hemisphaerica)
CTTACAATAAATTAAATCATAAATgtatatataaataaatattttacaaa
tttagtATAAACCCTATTATTGtgtattattttttgaaaagactaGAAAT
ATTTGAATAGACAATAGACGACCTCGATGAAATCTGATTCACATGGATTT
TCGCGTGGGGGGAGGGGGTGACGACTAACATTTTTAGATTCGTATTACAG
TTCTGTGCATTGATTTTAGTCCGAAGTGCTAGAGTTGAATCTCTTGAATA
AGGAAaggtacatattttttttaataatcaaTTATCGAGTAGCTAAGGCT
CCATCCCTGAGAATGGCAAAAGAATTAAGTAATTTGGCCTTAGTAACCTA
GTTCTGAAACTGAGCATGAATCGGGAAAGCAACCAAAAATCCCTAAAAAA
AGAGGAATTTCCGGCACTATTTGgcattaataataataacaacataTATT
GGCTTGCTCCGAAAAATTCTAAAGCTTTTAGGCAGCTGAAGAATATTGTT
TCCACATAGAGCCACTGTGAACAGAGATTAAAATGTGTACCGATGGTATT
TGAATACCAAATTTGAGGTATTTTGGACATAAAACGagataaaagtcaaa
aattaaGTTGCTAGGCATTTTTGGCTAGAAATTCATAAGTAATTTTTTAG
CCAAAATTCGTAAAAATACTTAGCAGCTCCAGCCCTAAGCCGAAAATTAg
ggttgcttattaaaaaaaaatgtgtattcacttatttcccatccaaataG
TGTGAACGCTGGCtcgaaagtaaaatctatcacAAGATCTCAAAGATATT
ACCGATAGAAGATTCGATTCGTATACAAATCCTGATTCCAAATAGTCTAT
AGAATGCCACACCGAATCAATAAAACAGACTTCATCTCCtttatacagta
gagtctctttaacaaATGTTTGTTACCCTTGAGGGTTTGAGCTATAGAGA
CTTCACCTGTAGCTTCCTCTTCTAGAAATCTGTGTATCAGTTCGCATCAG
TCACAATGCACCCAAATAACGTTCTCAGACTTGTGCATATAAATGCACTC
TTTTGGTTTCTATGTGAGTATAGTCGTTTCCATCGAAACTGATTTCCGTA
CGAATATATTCATTTTACCATTCCCATCAGTGATACACACTCAATAATAT
TTGCCAATCAAACACCTGCCAAACTTTGCGTCGAaaggttttgatttgat
cagGGTTATATCTCGTCATTTTAGGCCAATCACAGATAaaggaaactgac
gtcattctACCCTGGTAGACTTGACCCCAATCCTCTCGTTCATCATGGTA
CATATGCGACACTTCCGTTCATCATGTTAACTTGCGAAGGTTGATAACCA
TGGTTCGTCCTTCCACCGCCACCGTTTGCTTGCAATTCATTGAATAAGAC
TTCAtcatcgaaattttcaaaaccaccATCTTGTGATGTTAAGTATGCAT
CATCGTTGTAATATTCGAAATTCATACaattctgaaaataaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069296-exon-scaffold_496-1491911889:290404..291895 | TCONS_00069296-exon-scaffold_496-1491911889:290404..291895 | Clytia hemisphaerica | exon |
| TCONS_00069296-exon-scaffold_496-1510915933:290404..291895 | TCONS_00069296-exon-scaffold_496-1510915933:290404..291895 | Clytia hemisphaerica | exon |
| TCONS_00069296-exon-scaffold_496-1575043694:290404..291895 | TCONS_00069296-exon-scaffold_496-1575043694:290404..291895 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:290404..291895 . |
Blast
The following BLAST results are available for this feature:
|
