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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069356 ID=TCONS_00069356|Name=TCONS_00069356|organism=Clytia hemisphaerica|type=transcript|length=2630bpRun BLAST on NCBI transcript from alignment at scaffold_498:316792..325097- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069356 ID=TCONS_00069356|Name=TCONS_00069356|organism=Clytia hemisphaerica|type=transcript|length=8306bp|location=Sequence derived from alignment at scaffold_498:316792..325097- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00069356 vs. Swiss-Prot (Human)
Match: LAT4 (Large neutral amino acids transporter small subunit 4 OS=Homo sapiens GN=SLC43A2 PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 2.008e-45 Identity = 132/430 (30.70%), Postives = 205/430 (47.67%), Query Frame = 1
Query: 475 ILFGVFAMICMGGSLLVVSVYQVSNIIFRQARSRIICILHGAFDSSAVMLLIFKMIYDHGIQYRYIMFGYTLICLVLILIGTFILIPRLYKLFQWIEEE---ARLQGYYAIRRDSFAGPDFVVRSLGWENYAQVTYEARRKSRTLTYGSTNDSIGSIKEENGLANSYEDHNENVDVWEGENEPLVNQNQMSSKSHKRFGKGSVLNSILSPLYLFELIYLIGFQLKLWYFVGSMADFLGRLTLNDKTLISQYVDIFGYVQFGGILVTPLIGLVFD---------------KDRLTGKDKEIMMMSAHAQRIKKLSDCIAPFAVTNILCMIFCVTSAIENLHLQVVSFVLYAIVRGFLYSNHGAYMGAAFPASQXXXXXXXXXXXXXXXXXXQYVLFKITSGPLHGDPFWVNMFLLALVSIGNIHPLYLWWY 1710
++F A+ GG + + + N+ F RS I ++ G++ SSAV K+IYD G+ + ++ + C L+ + F F W E Y + S+ G D + G + Y QVT RR L+ GS S+ S KE+ L ++ VD+ E + +P S ++S+ SP+ L L+ + QL+L +++G+M + L L D+ + Y IFG +Q +L P+IG + D KD G+ K+ ++I+K+++ + FA TN+L + F VT I NL LQ++SF+L+ IVRGF++S G A +P++QFG+L GL I F + Q LF GPL GDP WVN+ LL L +G PLYL Y
Sbjct: 146 LIFIALALNGFGGMCMTFTSLTLPNM-FGDLRSTFIALMIGSYASSAVTFPGIKLIYDAGVSFIVVLVVWA-GCSGLVFLNCF---------FNWPLEPFPGPEDMDYSVKIKFSWLGFDHKIT--GKQFYKQVTTVGRR----LSVGS---SMRSAKEQVALQEGHKLCLSTVDL-EVKCQPDAAVAP------------SFMHSVFSPILLLSLVTMCVTQLRLIFYMGAMNNILKFLVSGDQKTVGLYTSIFGVLQLLCLLTAPVIGYIMDWRLKECEDASEEPEEKDANQGEKKK----KKRDRQIQKITNAMRAFAFTNLLLVGFGVTCLIPNLPLQILSFILHTIVRGFIHSAVGGLYAAVYPSTQFGSLTGLQSLISALFALLQQPLFLAMMGPLQGDPLWVNVGLLLLSLLGFCLPLYLICY 538 HSP 2 Score: 62.003 bits (149), Expect = 2.008e-45 Identity = 43/128 (33.59%), Postives = 60/128 (46.88%), Query Frame = 3
Query: 78 GMLETLLCSGITYGWASIVYVFKTEYFYMHLCEDWYAAQNKSLPTPKPRLSAIDFVFKSNPVNTEPGEYPIVRGGAAYIDDGKLPGCPAQDARLNLIFTVSLFCLCGIKFPAGIFIDKCGPRIARAVG 461
+LE LL S + GW S++ + K+E FY +LC + N ++ EPG + ++++ G L C AQD LNL FTV F L I P GI +DK GPR R +G
Sbjct: 19 AVLENLLFSAVLLGWGSLLIMLKSEGFYSYLCTEPENVTNGTVGG-----------------TAEPGHEEV-----SWMN-GWL-SCQAQDEMLNLAFTVGSFLLSAITLPLGIVMDKYGPRKLRLLG 122 The following BLAST results are available for this feature:
BLAST of TCONS_00069356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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