TCONS_00069360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069360
Unique NameTCONS_00069360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069360 ID=TCONS_00069360|Name=TCONS_00069360|organism=Clytia hemisphaerica|type=transcript|length=1631bp
ccgatgtagaaattttcttctgacacgctaaagctctgaaggtcgggaaa
attttcaatatattggcccgctcctttagagctttagcgtgggcggccgc
caatacgccatcggaatatcagataagataGAGATAGGCTACAGCGTCCG
CCGTTTACAGTCTGCGCGGTTTATAATCGTGATGTATACCGGTCTTTAGA
AATAGGGCCTTATTTcgaagtttgttttgatttttcgggTCGACCACGTG
CTTTCTTTGGATTGCTCCTGCTGAAACTTTTCTTGTGAGTTTTTGTTGCA
TTTTAACTACCAAAACTTAGTAAAAAAGGAAGAATGAGTGACGATGAAGG
ACCTAAAAAAGCAAAGATACCAAGAGTGTCTAAACCAAAAGACAGAGACA
AGCGTTTAATCGTTATTTTGGAGTGTGCTTCGTTAGAAACTGTGAAGaat
GGTAAAACGTTTGAGCTTTTGAACTGCGATGATCATAAAGGCATTTTGAG
GAAGAAGGGGAATGACCCTGCAAACTACCGACCAGACATAACCCACCAAT
GTTTACTGATGTTGATGGACAGTCCCTTGAATCGTGCCGGTCTTCTTCAA
GTTTATNCTTGTAGAGATATTATTAaacttatttttactttttagaatGG
TAAAACGTTTGAGCTTTTGAACTGTGATGATCATAAAGGCATTTTGAGGA
AGAAGGGAAATGACCCTGCAAACTACCGACCAGACATAACCCACCAATGT
TTACTGATGTTGATGGACAGTCCCTTGAATCGTGCTGGTCTTCTTCAAGT
TTATATCCACACAGAAAAGAACGTTCTAATTGAGATCAACCCACAAACTC
GAATTCCAAGAACTTATAATAGATTTTCTGGTTTGATGGtCCAATTGCTT
CACAAATTGAGTATCCACGCTTCAAATGGTCCCATCAAACTAATGAAGGT
AATCAAAAACCCAATAACAGATCATCTTCCAGTTGGCTGCAAAAAACTAG
TGATGTCATACAAAGCAAAGAAATGTACGCCTCCGAGAGAACTGGTACCT
ACTGATGAACCAATCGTTTTCGTTATCGGTGCTATGGCTCATGGAAAGGT
CGATGCAAGTTATGGTGAGGAAGATATAGCGATCAGTGAATACCCACTCT
CCGCAGCTCTAACGTGTGCCAAAGTATGTAGTGCCTTTGAAGAACAATGG
GGAATCACTTAACATTGCATCGAGTCTTTTAGCAAGATCTTTTCAATATT
ACATTGATAGCTTATGTTTCAAGTAGTGGCTGTGGTTAGACAATTAATGA
AGCAGCAGATCCATTATGGAAAGGCTCTGGTATACTTATTGGATATCTTG
ATTGAAATGGCGACGGGCAATATTGTAAATGTTGGATAGAACTTTTAAAT
AATTGTGAACCATGAATTTATGATCTCTTTAAGTGATgatgaaaataact
tttgtaGATGGTTAAGAATTTATTTACATATCGTACATTACTTTTAGCCT
GCTTCTCACTCAAACATGCTTCTTCTAAATTGATTGAAGCTAAATAAAGC
TCTAGATCAATTTTTGAGAGTTTTGTCTTTAACAAGATAATACATCAATT
ATACTTTGTCAGAGACATTACAACATTTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_498:350655..359168-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069360 ID=TCONS_00069360|Name=TCONS_00069360|organism=Clytia hemisphaerica|type=transcript|length=8514bp|location=Sequence derived from alignment at scaffold_498:350655..359168- (Clytia hemisphaerica)
CCGATGTAGAAATTTTCTTCTGACACGCTAAAGCTCTGAAGGTCGGGAAA
ATTTTCAATATATTGGCCCGCTCCTTTAGAGCTTTAGCGTGGGCGGCCGC
CAATACGCCATCGGAATATCAGATAAGATAGAGATAGGCTACAGCGTCCG
CCGTTTACAGTCTGCGCGGTTTATAATCGTGATGTATACCGGTCTTTAGA
AATAGGGCCTTATTTCGAAGTTTGTTTTGATTTTTCGGGTCGACCACGTG
CTTTCTTTGGATTGCTCCTGCTGAAACTTTTCTTGTGAGTTTTTGTTGCA
TTTTAACTACCAAAACTTAGTAAAAAAGGAAGAATGAGTGACGATGAAGG
ACCTAAAAAAGCAAAGATACCAAGAGTGTCTAAACCAAAAGACAGAGACA
AGCGTTTAATCGTTATTTTGGAGTGTGCTTCGTTAGAAACTGTGAAGGTA
TTTTTTGCGTTATTTTACATCTGTCTTATTATTTACATCTTGACTTTAAA
CTTAATTGGACTGTTGGTTTCTAGCTACTTGTCAACCTTAGAAGGTACCT
GGATGTGCCAAAATACTTGATCTATGACAGCTCAGTTCGGCAAATTGCAC
AGATCTGCAGAGGACCCTGCCGACGCACCGGACTTAACGAACACCGGACA
CTCGAAAGTCCGGTGTAAAATAAGAATTTTTTTTACCACCGGACAATCTC
TACACCGGACTTAAAGAACTCGGATGTCCGGTGTCGGAGAAGGATATTTT
TTTCCACCGAACAATCAAAACACTGGACATGACCAGTCCGGTGCGTCCGG
TGTTTCTTAATTTTTTGTTTCATAAATGTCCGGCGTCCAAAATTACCTGT
ATGCAACACCGGACTGACACCGGACTTATTGCGTCCAGTGTAGCGAAAGG
ATTTTTGCCACCGGACAAATACACCGGACAGTCCGGTGCGTCGGCAGGGT
CCTATCTGCAGCGCTGCGAAATTCTGCATCTTTAGCATTGTGATATTCCG
CAACGTTGCGAAAATTCCGCGGCTTTATTACTGCTGCATAGTTTCGCAGC
TCTGGCCTTTGGACCAAAATCAGCATCGCAGGGCCTGGACCGGGGTCCCA
AAATAATGTGCATTTTGAAGAACAACCCAAAAGGAAACTTTTCACCCTTT
TAATTTTAATTTCCTACCTAGCGATTATTCACAATCATTCTTGGAAGAAA
TGCTACTTCGTTCAAAAAAGCGCTACTTTGTTCAAGAAAGCAAGTTTTTG
CTTGATTTTGCATGTGTTTAGAAGAAAATTGATAGGCTCATAATTTTTAA
AATCACAAGCTTCAATTGGAAGCGTTGCGTAAAATAGCAGCGCAACCCTG
GGAAAACGCTGCGAAAAACTGCAACATTGCGGAATATTGCAACGTTGCGG
ATCTATGCAATTTGCCGAACTGAGCTTGGGAAATACAGTGTGTTTTGTGT
TTTTGAAACAAATAGTAGCTTTCACATTCTTTTTACTCCCTCCTTTTCTA
GCTAATTCCCGCCGCGTGTTAGTCAGTCGAGGATTACTGTATGCCCTAAA
TAAGAGATATACTCCAGTGAGGCTGGAACTTTGATTTTTGAGGATTACGA
TTTTACCAGTTTTTTAGCAATTTTTGCCTCGCTAACCCAAATCTCGCAAC
CTCTTTACCTTAAAGGAAGATCGAAATTAGAGTTTTTCAGCGTATGAAAA
AAACACAAAGCAAAAATTTTTCCATCTTCACAGGATCGATTCTCAACAAC
AAAATACATCTTTTGTTCTTTGGATTTGTTTCTGACGTTTTTCCTTCAAA
GAATATCGATCACTTTCCTTTTTCCCTCAAGCGCGCAAAAAAAAAATGAT
TAGCTCGCTTTCTCGCGCGGGCAAAAAAAGATGAAGCGGCAATCTTGCAC
TGAGGGTGTTACTTAGTTTCCGCCCTATTTTGCGCCCACAATAGAATGGT
CCAAATACGGGGGTATTCCAAATGATAAACAATGTCGTTCTGTAAGTGTT
TATTTTCCAAGAGATACAAATAGTATATTGAATATTATTAACTTATTTAT
TTAAGTATTTATGAGCCCAAAAATTTTAATATCTGGTTAAATAAAAAACA
TATGATATCAGTTCTGTTTTTCCTCAAACCCCCGGGAAAAGTTTTTTGGC
CGACTTAGCTATTTTACAAATTTCGGAAAAGAACTCCCATAGGAATTCCG
ATACATAACCCGATTGGTTCATTTCGGAACGGCTTCAAGAAAGTCATAAT
GGCAGATGATTTTAAAAGTTTCTGAGGAAATGTTTGGAATTTATCGATGG
TGATGGCTTGTTGATTCTTTAAAGAAAAAAGATAACAGGTATAGCTTTTT
CTAATCCTGGAATATCGAGGTTCCAGCTACACTGTACTCTATTTAAGAGA
AGGTCTCTTAAGTAGGAGATTTCTTTCTCTTAACTAGGAGACTATTCTTT
CTTTGTTAATTTTTGGCCTTCTCATCATTTTGCGCAAGTTTTGAACTTCA
TAGAGCGACTCAGCACGTTTTTTTCTCCCTTCTAGCAAAATTTGGTTGAG
TTCTGCTTTTGTTTCGGGGACCTAGGATGGCTAGGGTCCATCAATCTAAA
GGCCGATCTACATCATGAGAATTTCGTGAAAAGTAATAATATAGTTCGGG
CCATATTTAAGAAACGCGTTCAAGCGTGGTCAAAAAGCGGGTCAAACAGA
AAGTGAGTCGCTCTTGTCTCTCCTAAATAAGGGGGTTTGAGAAAAAACGC
GTTTTGAAGGCCGAGGGTGTTTCTTCATTATTTTAAAAATTACGTCAACA
CATGCAAATGAGGCTATTTATGGTTTTTCGAAGTTTGAAAAAGAATGAAA
AGGTATTTTATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTAGTTTA
GGTAACGTTCTCTTAAATAAGAGACTGAAAATCTCCTAAATAAGGTAATC
CTCTAACTTGGGTATTCTCTTATTTAGGGCATAATCCTCGATTGTTAGTG
TAGACACAACTTTACTCCGGGGAAATGAAGGGTTTTCATTGGTCTAAAAT
CATGGATGGTCACGTGACCAAAATTTTTATCTAGGGAAATGCTGTGGCGG
CAATGTTTTGTTTTAGTGAGATTGACCATTTTGTTGTTTTGATTTGAGCG
GGCAAAATTTCTGTACAAACCAAAATATGGCTTCGTTGGAATACCAGTTG
AAACACTTGTGTAGGCTAGACTTACCTCTTTTCTCTTTCTATTCCAACAA
TAAAAAATGCTTATATACATAGTTGTCACTAGTCTGGAGATCCATATTCC
AGTATACACCTAACTCTTCACACAAAAATTACGGGAAACGCATGTTTAGA
CTTTGTACCCTATGCTGCACTCAAGCACTTAAGCCAAAGTCCCGCAAAGG
CGGGACAAAAATCAGTTTTTTGAAGTTTGAAAAAAAACGCCACATAGAAG
ATCTTTCAAATTCAGTATGTGAATAGAGCAGTAAAAAATACAACTTTTCT
ATTTTTCCTTTTTTTTGCAAAAGTTCTAGGAATGAAAATAAAGGGATAAT
GATAATTGAATACTATCCATTGATGACCCGCGGCACTATCGTAAAGCTAG
AATCTCTTCGCGTACTCTTTGCTTGAGAAAATGATTGACAGATTGAAGTT
TTTCACCCGCGCAGGAGTTTGTGGAGCGTTCTCGGCTCAATCCTCGGACC
GCACTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTATTAATTTTGTTAGA
TCTGACAAATTGATGTTTGTAAGTGCACTTTATAGTTTTGATTCCCATTG
AAGAATCATATTCTGGTTTTCACGTTATTAGATGCTGTTTTAGAGCTTTA
GGTCTACACTGTATTCTCTATTCAAACTTACACCACATATAAGCAAAAAA
ATGCGCCACAAAACTTCTAAAGGAATTTATGAAAAAATAACCTGGCGCTT
TTTATATACCATATATACAGAAGATGAAATAGTTTGAGCCAAGCCAACCT
TGAAAACTAATTTGAAGATCAATTTCCCAAATAGACAATTTACAGGGGAG
ACAGAACCCACCTAGATCCGCACACTGCCGAATAGCCTATTTCCCGGAAA
TTTTGCCGGACCTAAAAAAACTGACCCATATGTGCATGAATGAACATGTG
CGGAATTATTTTTACTTTAGCGTATAAACAAGGCCTTAAAAATCAAAGCG
CTGTTTCAGGAATTAAAATGACAAAATTTGGTTGGTTGATATTCTGGCTG
CTGCACGTTTGCAATCTGTCATTTTGTCTCATTTTAAGTTTTCAAGTTTT
AATTGTCTTGGGATCTTGAAATTGATTCAGGTACTCTCATCCTTGGTGTT
GCAAATACATCCTGTAGATGACTGATGTTGTTTTTTCTGAAAACTTGATT
TCCTAGTGTGACTAACTGTTTTGATGCCAGAGTATTTCGTTATTCAATAT
TACATCCTGACTAGCCTGGGTATTCAGACTAAAAATTTCAGAAAAAAACT
CTTACCTCAACATACAAAGTTCTAAAATTTTAGAGTTTGGTACAACTAAA
AAAGTCTGGTGCAGTTTCAATGACACAGTCTGTGAGTGAACCCTTGTTGA
CAGAATCAGACAGACACACATAATTACTTACCAGAAAGACCTCTTTTATA
AACTTAAAAGTCTTTCAAAACTACTTTAAACTACACATTCATTCACACTG
ATTTCCATCAGCCATTTTGTTTAGAAATGAACCTGTGTTTTCATTTTCAT
TTGTTTATCTTTTTTTGCAATGTCAGCCTTTTCCATAAATTATGTGCTCA
CATAGAAAAATATTGGAAACCCCATGAAAATTCTGTTCAGTGACTTGCCG
CGAATTGACCAATTAGATGCACTCGCATATGCAAGGACAATTATCTCTGT
ACGCAAGTTACTTGGACCAGACTTGTAGACAAGAAACAAAACAGACAATG
CTAGACAATGAAATAGTTGACGGTCCTGGACGGTCTGGATATCGAGGCTA
CATCCTGACTAGCAAAAGGTCTATTATTAGATGAAATGATACTAAATACA
CATCACTTCTACATCAAGCATCAAGCAGAGAGGCATCAAGTACCATTTTG
AGAATCTTTGGTATAACCTGGCTGGGGGTTGAACCCACAACCTTGCGAAC
TGTAGCGAGATGCTCTACCACTTCACTATGGTAGCTTGTGATGTGCATGC
TTAGTATTGGCAAATTTACTCATTATGAATAACTAATGAAGAGAAAAAGT
GCTATCACTCAAAAGAGGCTGGTTATGCTCCGTATGGCTTTCTAAGCGGT
TTTCTAAAAGTGAGTCGAGGTATAAAGATACAGGGAAGTAAGTCTGTTAC
TGCAAAATTACCTGTGAATAAATAATATTTTGGTACATCGTTCTACACAG
CTCATCTCAACCTGGACTGAGCAAAACCAGCCAGCCATAATTGGCATCAA
GATCTGGTTGTTCATAAAGGAACTTGGCTGATCCAGGCCAAATCAGGCCA
TACGATACATCTTCTTTGACAATCCTGTCTTGAACGTGCTCCAAATCGCT
TGCAGAGATATTATTAAACTTATTTTTACTTTTTAGAATGGTAAAACGTT
TGAGCTTTTGAACTGCGATGATCATAAAGGCATTTTGAGGAAGAAGGGGA
ATGACCCTGCAAACTACCGACCAGACATAACCCACCAATGTTTACTGATG
TTGATGGACAGTCCCTTGAATCGTGCCGGTCTTCTTCAAGTTTATNCTTG
TAGAGATATTATTAAACTTATTTTTACTTTTTAGAATGGTAAAACGTTTG
AGCTTTTGAACTGTGATGATCATAAAGGCATTTTGAGGAAGAAGGGAAAT
GACCCTGCAAACTACCGACCAGACATAACCCACCAATGTTTACTGATGTT
GATGGACAGTCCCTTGAATCGTGCTGGTCTTCTTCAAGTTTATATCCACA
CAGAAAAGAACGTTCTAATTGAGATCAACCCACAAACTCGAATTCCAAGA
ACTTATAATAGATTTTCTGGTTTGATGGGTAAGTACCTTGGTTATTTCTG
ACAGTTATTATTATTGTTGTTATTACATCATAGGTTTGAATAAAAGTTCA
CATGTACCATATAGGTCTCTAAGAACTTTTTTGTAATTATATTACAGTAC
CGTGATACTTTGTTATTAATGCTATTTTCATGCTCGTTCCCTGCATGTTA
TCAACTTTTGATGCTTACTGACAACGTGAGTAAAGCCTTTGATATACGAG
GCTGTACTTCATGAAGATTTTTCTCTATCAAAGTTTCTTAAAAGTACATT
GATGTAGTTGCAAAGCAAAAAAATAAGTTAAAAATTCCTTTTTCTTTTTT
ATCAGTCCAATTGCTTCACAAATTGAGTATCCACGCTTCAAATGGTCCCA
TCAAACTAATGAAGGTATTTTTTCTGCTCATTTTCATAGTATTGTTTTTT
TATACCGGGTGCACCACAAACAAAGTTTCTCTCTTTAAAATAAATATTCT
TGAGGTCTAAAAATTCTAAAATAACCATTCTTTTTTCATTGAAAAGAAGA
AACGTAAACTTGTATTTTGAAGGGTAATTTATTAAATTCGGTTCTTTAGA
TAAAAAATTATGCTCAATGCAATAAAAAAATTACTTTCAGAAAGTGCTCG
ATAACTTTGAAAATCGACCTATCAAATTAAACAGATGCATAATTACTAAT
CTCAATAGGTTATTGATCAAGCCTTTAAAGTCTGAAAAGTGCATTATCGT
TACATAAATGTATTTCAAATTTAGGCCCGTTTTAGCACACTCTGTATTTA
ATGCGTCATTCTAAAAGTTCTCCCTTCCATAACTTTCTGCTTTAGGTAAT
CAAAAACCCAATAACAGATCATCTTCCAGTTGGCTGCAAAAAACTAGGTA
TAATAAACATTAAAAAAGTTTTTTTTACCTCTTTACCCCAATGCTGTTTG
ATTTTTATGCATTGTTACAATAAATTCTCTCTAAATTTAGGGTTTTTTAT
TCTTTAAAAAACATCTAAAAAGTATCGTATCAAACTTTTTTTAAAGACTT
GACTTGTTTATGGCTCAAAAATGTGACGTATTTACAATGATAAATCCTGA
AGAATCTCATTTATGATTTCTTTTGTGTATTTACAGTGATGTCATACAAA
GCAAAGAAATGTACGCCTCCGAGAGAACTGGTACCTACTGATGAACCAAT
CGTTTTCGTTATCGGTGCTATGGCTCATGGAAAGGTACGTCTCCAGTCTT
TACATCCTTTAAAATTCAAAATTCAACGAAAAGTTCAAATAATAAACTTG
AATAAACCACAGAATTACTTTCTAAATCATTGAATTACCTGCAACGAGCT
GTTGTCTACTTATAAAGATGACGCATAATTTTGCAAGGTAGCTATATCTA
GTGTGGTTATCACCTTCTACAAAAGTATTGGAAACTTAAGTAACCTCCTT
CCAGGAAACGTCAAACACGGTTGAAATTTATTTGGTAAATGTGCCAAACC
CTGAAACCCCACCCCCACCCCTTTAGAAACTAAAGCTTTGACTGCATGAT
GTAAAACTTGATTTTCACCAATGTTTTTCAGGTCGATGCAAGTTATGGTG
AGGAAGATATAGCGATCAGTGAATACCCACTCTCCGCAGCTCTAACGTGT
GCCAAAGTATGTAGTGCCTTTGAAGAACAATGGGGAATCACTTAACATTG
CATCGAGTCTTTTAGCAAGATCTTTTCAATATTACATTGATAGCTTATGT
TTCAAGTAGTGGCTGTGGTTAGACAATTAATGAAGCAGCAGATCCATTAT
GGAAAGGCTCTGGTATACTTATTGGATATCTTGATTGAAATGGCGACGGG
CAATATTGTAAATGTTGGATAGAACTTTTAAATAATTGTGAACCATGAAT
TTATGATCTCTTTAAGTGATGATGAAAATAACTTTTGTAGATGGTTAAGA
ATTTATTTACATATCGTACATTACTTTTAGCCTGCTTCTCACTCAAACAT
GCTTCTTCTAAATTGATTGAAGCTAAATAAAGCTCTAGATCAATTTTTGA
GAGTTTTGTCTTTAACAAGATAATACATCAATTATACTTTGTCAGAGACA
TTACAACATTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043223XLOC_043223Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069360-exon-scaffold_498-1575043694:358722..359168TCONS_00069360-exon-scaffold_498-1575043694:358722..359168Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1575043694:352741..353182TCONS_00069360-exon-scaffold_498-1575043694:352741..353182Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1575043694:352355..352413TCONS_00069360-exon-scaffold_498-1575043694:352355..352413Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1575043694:351872..351923TCONS_00069360-exon-scaffold_498-1575043694:351872..351923Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1575043694:351535..351632TCONS_00069360-exon-scaffold_498-1575043694:351535..351632Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1575043694:350655..351187TCONS_00069360-exon-scaffold_498-1575043694:350655..351187Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1510915933:358722..359168TCONS_00069360-exon-scaffold_498-1510915933:358722..359168Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1510915933:352741..353182TCONS_00069360-exon-scaffold_498-1510915933:352741..353182Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1510915933:352355..352413TCONS_00069360-exon-scaffold_498-1510915933:352355..352413Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1510915933:351872..351923TCONS_00069360-exon-scaffold_498-1510915933:351872..351923Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1510915933:351535..351632TCONS_00069360-exon-scaffold_498-1510915933:351535..351632Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1510915933:350655..351187TCONS_00069360-exon-scaffold_498-1510915933:350655..351187Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1491911889:358722..359168TCONS_00069360-exon-scaffold_498-1491911889:358722..359168Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1491911889:352741..353182TCONS_00069360-exon-scaffold_498-1491911889:352741..353182Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1491911889:352355..352413TCONS_00069360-exon-scaffold_498-1491911889:352355..352413Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1491911889:351872..351923TCONS_00069360-exon-scaffold_498-1491911889:351872..351923Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1491911889:351535..351632TCONS_00069360-exon-scaffold_498-1491911889:351535..351632Clytia hemisphaericaexon
TCONS_00069360-exon-scaffold_498-1491911889:350655..351187TCONS_00069360-exon-scaffold_498-1491911889:350655..351187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_498supercontigscaffold_498:350655..359168 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.3395	26.3841	22.3165	21.2378	29.6384	23.6856	21.8847	27.1745	18.723	19.2639	19.1423	17.3033	18.5901	28.4842	19.5999	24.114	20.7999	21.9133	4.77197	5.86811	22.5214	25.1065	27.3242	20.7325	19.0454	24.8955	13.9627	11.275	15.5124	18.0335
Blast
[Close]
BLAST of TCONS_00069360 vs. Swiss-Prot (Human)
Match: NEP1 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens GN=EMG1 PE=1 SV=4)

HSP 1 Score: 281.567 bits (719), Expect = 1.550e-90
Identity = 130/186 (69.89%), Postives = 153/186 (82.26%), Query Frame = 1 
Query:  649 GKTFELLNCDDHKGILRKKGNDPANYRPDITHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTYNRFSGLMVQLLHKLSIHASNGPIKLMKVIKNPITDHLPVGCKKLVMSYKAKKCTPPRELVPTDEPIVFVIGAMAHGKVDASYGEEDIAISEYPLSAALTCAKVCSAFEEQWGI 1206
            GKT+ELLNCD HK IL K G DP   RPDITHQ LLMLMDSPLNRAGLLQVYIHT+KNVLIE+NPQTRIPRT++RF GLMVQLLHKLS+ A++GP KL+KVIKNP++DH PVGC K+  S+     +  RELVP+ +PIVFV+GA AHGKV   Y E+ ++IS YPLSAALTCAK+ +AFEE WG+
Sbjct:   58 GKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWGV 243

HSP 2 Score: 114.775 bits (286), Expect = 1.309e-28
Identity = 61/94 (64.89%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:  328 GRMSDDEGPKKAKIPRV-SKPKDRDKRLIVILECASLETVKNGKTFELLNCDDHKGILRKKGNDPANYRPDITHQCLLMLMDSPLNRAGLLQVY 606
            G  + D      K PR+ +  K   +RLIV+LE ASLETVK GKT+ELLNCD HK IL K G DP   RPDITHQ LLMLMDSPLNRAGLLQVY
Sbjct:   16 GEQAQDWDALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVY 109
The following BLAST results are available for this feature:
BLAST of TCONS_00069360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEP11.550e-9069.89Ribosomal RNA small subunit methyltransferase NEP1... [more]
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