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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069413 ID=TCONS_00069413|Name=TCONS_00069413|organism=Clytia hemisphaerica|type=transcript|length=2121bp
gttttttttttaataaatggTCAATTTAGTACTTGGTTTCTTTTTATGGA
TCCAATTCGTTACGATTTTCTTGGTTTTCTATAAAGTAACTTCCTTCATC
CATTTTATTCTTGGAAGAGGGTATTGTATGTTTCCATTTCATCAAGAAAA
GATTATGAATTTGCCAACTCGCTTCTGACAATGAATTTGTAGTCAGTTTC
AAACATCACTGCTCACTTGGTGAAAAAAGTTCATCTTGGAAGTCTATCTG
AAGACGCTTAGTGTACGGAGAATCGATTTAGCAGGTTTTAAGTTAGAATG
GTATTGCTGTAATCTATATCATTCGTGTCCTCAGTTTTATAGACAATCGA
CAATTACAGTTATTATTGCAGATAAAGGTATCTGGATGTCCTGGATATGC
TCGTATTTTCTACAAGAAATACACTTCTTATCATATACGGTATAtgcatt
attttctttaacgctATGTCTTCTCTCTTTTTATAGAGTCACGAAcagaa
aaatcgaaaatggtTAATTACTTGAACATACCAGCTATCGTTACCATCCT
CGTCGTGCTGGCAGTTATCGCGACTTTCCTCAACTCGCTCAGTATTTATA
TCATTGTCACCACCAGGCATCTCTGGAAACGAAACTCAAGTCTTCTGCTC
ATGAATCTACTTGTTGTCCATCTTTTCCAAGGTGTTTTTGTTTTCCCATT
CTACGCTGGCAAGAAAGTGAAACAAGACTTTTTACCAGCTCAAATCTTTG
GGAATGGTTTTCGACTTTCCTACATGTTAAGTTTCTACGGCGCATGTCTT
GGCATACTACTAATTGCGATAGATCGATTTCTGGCAACCTACCTGCTGAC
TAAATACAAGACAATAGTCACAAGGAAACGTGTCAAAATCACATTGGCTG
TCTTCTGGATTTACATCATTGGGCTCTGTATGATTCCCTTCATCGACACC
AGTGGCCCGCAAATGAAGACCAAATTTGACAACTCTACAAACCAAACGAT
TGAATACGAAGCGAAGAAATTTTACGTTTATAATCAACAACGTGTATGGG
TTTTATTCATGTTGATCGTCAATACAGCTCTCCCTTACGTCCTGGTTGTT
ATGTGTTATTCATTCATTGCGTACCGTTTAAAGAGTTTGCAAATCTACCA
TCCAACCAACATCGGTCAACCAGTCAAGAAATCTAAATACGCTGTCAATA
AAACCAATGAAACGGACGAATTGAAACCGCTACGAAAGAAAGATGTAGAG
AAGCACAAACAAGTCACTAAGCTAACCTTCATCTTAACCCTAGCGTACGG
TGTCTTCTGGACGCCTTCCATCATTTATTACCCATTGAAAGCAGATTGTA
AAAGCTGCTTCCCTGAAAATTACGAGGACTCAGAATTGGAACAATACGTA
GGCTTCATTACCAAGTATCTTGCTTTTCTGGATGCAGCTGTAGCACCCTT
GGTCTATTGTTTTATGCACCGTGAATTTCAAAAGTCTTTGATAAGAATCA
AAAGCAAGCTTCTAAAGCTACCCTTGCCAGAACCTGACGTACCATCAACT
AGTAATGATACAACCCTTCTGCAGTGAAATGAGAATCCGGAAATTTTCTC
TGTGCTTTTTGACTGAAAAATACTGTTTAAACCACTTTCCAACTGCTAGA
GAGGTTCAAGGTAGACTTGGAGGTTCATTTAATCGAACAATTATTGACAC
TATGGTTTATATCTGCTTCAGGAGGATGGTAACTGACAATGATAGTGCTT
ACAGGGTTACAGGGCCGTCTTACCTTGTGTCAAACATTAAATTATGAGAG
ATTGCATATTTATTACTCTCTGTAACATGTGTATATCCTGGGCAGTCCTC
TTCAAAAAGGAAATCTATGAGAACAGACTGATTGATGATAATTGTCATGG
GCTATCGTCTCAATTTTAAcacatgatttttttatgattcacGGGGGACT
TTCATTTACTGTAAATGTTATAAAATGTaaagacttctttttttaaatat
cagcTAAAATAACCTTCTTTGTAAATAGGAATTTTATTGTATgagtgaat
tttgattttttttattagaattgtATATATATGAACGTCTTAAGaataaa
taaaagatatttGATTTTGGG Run BLAST on NCBI transcript from alignment at scaffold_5:116825..118945+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069413 ID=TCONS_00069413|Name=TCONS_00069413|organism=Clytia hemisphaerica|type=transcript|length=2121bp|location=Sequence derived from alignment at scaffold_5:116825..118945+ (Clytia hemisphaerica)
gttttttttttaataaatggTCAATTTAGTACTTGGTTTCTTTTTATGGA
TCCAATTCGTTACGATTTTCTTGGTTTTCTATAAAGTAACTTCCTTCATC
CATTTTATTCTTGGAAGAGGGTATTGTATGTTTCCATTTCATCAAGAAAA
GATTATGAATTTGCCAACTCGCTTCTGACAATGAATTTGTAGTCAGTTTC
AAACATCACTGCTCACTTGGTGAAAAAAGTTCATCTTGGAAGTCTATCTG
AAGACGCTTAGTGTACGGAGAATCGATTTAGCAGGTTTTAAGTTAGAATG
GTATTGCTGTAATCTATATCATTCGTGTCCTCAGTTTTATAGACAATCGA
CAATTACAGTTATTATTGCAGATAAAGGTATCTGGATGTCCTGGATATGC
TCGTATTTTCTACAAGAAATACACTTCTTATCATATACGGTATAtgcatt
attttctttaacgctATGTCTTCTCTCTTTTTATAGAGTCACGAAcagaa
aaatcgaaaatggtTAATTACTTGAACATACCAGCTATCGTTACCATCCT
CGTCGTGCTGGCAGTTATCGCGACTTTCCTCAACTCGCTCAGTATTTATA
TCATTGTCACCACCAGGCATCTCTGGAAACGAAACTCAAGTCTTCTGCTC
ATGAATCTACTTGTTGTCCATCTTTTCCAAGGTGTTTTTGTTTTCCCATT
CTACGCTGGCAAGAAAGTGAAACAAGACTTTTTACCAGCTCAAATCTTTG
GGAATGGTTTTCGACTTTCCTACATGTTAAGTTTCTACGGCGCATGTCTT
GGCATACTACTAATTGCGATAGATCGATTTCTGGCAACCTACCTGCTGAC
TAAATACAAGACAATAGTCACAAGGAAACGTGTCAAAATCACATTGGCTG
TCTTCTGGATTTACATCATTGGGCTCTGTATGATTCCCTTCATCGACACC
AGTGGCCCGCAAATGAAGACCAAATTTGACAACTCTACAAACCAAACGAT
TGAATACGAAGCGAAGAAATTTTACGTTTATAATCAACAACGTGTATGGG
TTTTATTCATGTTGATCGTCAATACAGCTCTCCCTTACGTCCTGGTTGTT
ATGTGTTATTCATTCATTGCGTACCGTTTAAAGAGTTTGCAAATCTACCA
TCCAACCAACATCGGTCAACCAGTCAAGAAATCTAAATACGCTGTCAATA
AAACCAATGAAACGGACGAATTGAAACCGCTACGAAAGAAAGATGTAGAG
AAGCACAAACAAGTCACTAAGCTAACCTTCATCTTAACCCTAGCGTACGG
TGTCTTCTGGACGCCTTCCATCATTTATTACCCATTGAAAGCAGATTGTA
AAAGCTGCTTCCCTGAAAATTACGAGGACTCAGAATTGGAACAATACGTA
GGCTTCATTACCAAGTATCTTGCTTTTCTGGATGCAGCTGTAGCACCCTT
GGTCTATTGTTTTATGCACCGTGAATTTCAAAAGTCTTTGATAAGAATCA
AAAGCAAGCTTCTAAAGCTACCCTTGCCAGAACCTGACGTACCATCAACT
AGTAATGATACAACCCTTCTGCAGTGAAATGAGAATCCGGAAATTTTCTC
TGTGCTTTTTGACTGAAAAATACTGTTTAAACCACTTTCCAACTGCTAGA
GAGGTTCAAGGTAGACTTGGAGGTTCATTTAATCGAACAATTATTGACAC
TATGGTTTATATCTGCTTCAGGAGGATGGTAACTGACAATGATAGTGCTT
ACAGGGTTACAGGGCCGTCTTACCTTGTGTCAAACATTAAATTATGAGAG
ATTGCATATTTATTACTCTCTGTAACATGTGTATATCCTGGGCAGTCCTC
TTCAAAAAGGAAATCTATGAGAACAGACTGATTGATGATAATTGTCATGG
GCTATCGTCTCAATTTTAAcacatgatttttttatgattcacGGGGGACT
TTCATTTACTGTAAATGTTATAAAATGTaaagacttctttttttaaatat
cagcTAAAATAACCTTCTTTGTAAATAGGAATTTTATTGTATgagtgaat
tttgattttttttattagaattgtATATATATGAACGTCTTAAGaataaa
taaaagatatttGATTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069413-exon-scaffold_5-1491911889:116825..118945 | TCONS_00069413-exon-scaffold_5-1491911889:116825..118945 | Clytia hemisphaerica | exon |
| TCONS_00069413-exon-scaffold_5-1510915933:116825..118945 | TCONS_00069413-exon-scaffold_5-1510915933:116825..118945 | Clytia hemisphaerica | exon |
| TCONS_00069413-exon-scaffold_5-1575043694:116825..118945 | TCONS_00069413-exon-scaffold_5-1575043694:116825..118945 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:116825..118945 + |
Blast
The following BLAST results are available for this feature:
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