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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069415 ID=TCONS_00069415|Name=TCONS_00069415|organism=Clytia hemisphaerica|type=transcript|length=3455bp
CCAGCCAGATGCTATCTctgaacttttttgaaaaacatttgcCTTTTGag
aaaaagaaagaaaaagtaaacacaaagaaagaaaaacttttgaaaaattg
atgaaaatatttttcggtggattcatttttcattggttTGGAAGTTGAAT
TTGTTCTTGGAAAGTCGTTAtcatttgaaattgaaattttgtgatattat
caacaacaaaaaatggCTATCGCATCTGGTTTGACATGTGTCGATTATCT
AGCGACAAATTTTCATTCgccaaattttgaagaaaaccaGCTCAGATACA
GTCCGACATTATCTTACGACGATTTATACACAAACTACCTTTCCTCAAAT
CGGCAACAAAGTTTGTACTACGACACTACAGCGCCACTGTTAGAATTCAC
AAGACTCTCGCTGGCTGAAACAACATTCGATTTTACTTCGGTGAAAACAC
CAACTGTGGCCTCAAATAATGAATTTGCAAACGAATGcgagaaaatgaaa
gaaattttgaactcGCCCAAGAAAACAACGGAGCATTGTGAAGTAACATC
GGAACGAGGGGTTATTCCGCCCTTTTCAGTAAACCGGTCATGCGAATGCC
CCTCCGGTAGTCCCCAATCCGATCTCGGATCAAAATTAAACAACGATTTC
AATGATAGTGAAGATGAAGAAATTGGGGCGATTTTCGAAAGGGATGCTGG
GAAGACTCAAAtccagcctcgttttgatgCAAACAGATTCAAATCGAGCA
GTTTGCcacattttaatttcttttcgaACGATTTTGAAAATGGCGGTTGC
AGGGAAGAGGAAGTTAGTGACAGTGAAATGGAATTGAACTCCATTAATAG
CCATTCCCGAACACCTTCAAAACCATGTGCTCATAATGCAACCGCATCAT
CAAGCACGCGCAAGAGACGCACGTCCGCCGATTACGTCATGCATTCAAAT
GGATTTTCCACAGTTTTGAAAAGACCATGTATTGATGCTGAAAAAATGCA
TCGCTCAATACGACGTTCGGGACTTCGATCTGGAACCAGGCGAAATATGG
AAAGAGAACTTTTCGTACCCATTGCGGGTAAAAAGTTGTAATAAATATAG
ATACGCTAATTTGGAAAAAAAGCAAGGTAaatatcatctttttttatTCA
TGTACAATATATTATATCTATATAACCATCGAAGTTTACATACTtgaatt
ttttacaagttttgttcgttttttttctcgataaaTTGAGAACCATAGAC
CGATACACATAGCAACGTCTTTTGTAGGTCTTTGAGACGTCTTACTCGCA
AAGCCGTGACATCCgaaatagaaaaatttaaagTGCTTTTTAACATGGAG
CGCAATATGttgttttttcatgaaattttatcTCGATTTTTTATGAATGA
ACATAGATTTCTTATCAGTAGCTTATACTCTATGTTTAAGAGATATGTTT
TCAAAACACGGCAGGGGTTCCAAAGCTCAATCAACTATTTTAACATATTT
AGACAGTTATGTGTCTTTGTGTGAAAAGAAAgcgttcttttttttcacga
CAATTTTTGATTAGATAGTTATCAAAACTTTGAACGTAACAATATTAGGA
ACTTTTTTTGATAACACTCTTTCCGAGCGAACAGTAGGGTTGCGCCATCT
CATCTCAtcgaaaaattcatcaaattgcCCAACGGaattttctttcaact
ttttattcttttgaaaaCAAGTTTAAGAACATGCTGGAATACTTTTTACG
AATATCCTCATTTATAATTTTTGTAGCTGGCCTACTTCATTTCGatcaat
aattttgaaataggGAAATTTATTAATTCCTAAAATTCATTATTCTAAAT
AAGATTATAGTCAAAAATTTAGAACAAACTctcttgttcttaatatgttg
tTCTTAATATGATGTTCTTAGAAAATGTTCCTAATCATAAGATGTGAAAG
GgtaattaaaaaagtaataCGTTGAGGCTTTCTGTGTATCGGATATTTAC
TTAATCAAATTGACAAAAGAACGATTGTCACTTTAAAATGAGCTTCCTCG
TACCGTATcttttcattgaataaaagagaaAGACAACTCCTCAATGTTTC
TTTCGAGGCGAGGCGCAGATTTTTTGAATGGGATTTGGGACTAAGCTTGG
ACTTTGAACTCGCTCTTTTAGCAGCCCTATTTTATTTGTCCTTCTCTCAA
TCTATAATTGTCCAAACAAAGCTCATCTATGGACTCGCACCTTTTTATGT
GATTACAGTAAGATCGATCATGTACAAGACCTTCATTTTTCTCCAGCCCG
GTAGTttgtaaattgaaatatttataagtAGGGACTTTAAGATGGGGTCA
GTAGGatttagaaattatttttgtGGAAAATAGATTGCTTTTTACTATTG
TTTGATTGCTTTTGATCTGTTTTATAGTTCAATATCgcaattttatttta
tgaatttttaaatcCAAATTCTTCCATATTAATTCTAAGCTTATacttat
tttgatgttttcatgGCTGAATGACCAAATAAAagtatgtaaaatttatg
aaatttaaaTGAGGATTTTAACAACAAATCCCCTGAGCTTTTATAGGGGA
ATTGACCATTGAAGTTTTTGTcaaacaaaaatgaattttatttagtAACT
TTTCCCCATTTGTGGCTAACATTATACAGCAAAGCAAAATAGAAGAGCTT
AACTTctgattgagaaaaaaagaaaatcctttcagctttttgttataaaa
aagGCGCTAAATCCTTTTGTTCAAAGCAATCTTATTAATCACTTTTTGTG
ATCTGTCACTAACCAGGTGATGCTTCCAATTCCTGTAAAACTGTAAATTT
ATTGTCAAAATTCgtatattattatatattacaatTTTTTGGGGGTTTTT
AAAAAGTAGgtattcaaaagatttttttttgaattttacctAGGTTTTTA
TCcaggaattttattttattgcgTTGATAATCGGttcaaaatatatattc
aaattttttttcaaagactgtagatttttttttggataaaatatgTGCAA
TATTTGGACAAAATTTATGCcggaaatttatatttttatcgcGATTTTTT
GAAGTCAATATATTTATGAGTTAATAATCCCTCTGCTTAAAGCATACCTT
GTAAAAGCTTGTGAATACTCGACACTTGAAAGGTTTAGCTCGTACCCAGT
GAGTTGAGTCTATTCACAAGGTACTGCAtataaaattttggaaaaacgaT
GCTGTTTTCTTACTTTTCATTGCAAGAGAGATATTATATATAGTATTAGT
ATATTGTATTGATCacttattattattgttattattaaatATTGTAAAAG
TTATTACTTATTTTAACGAGCTTATTGTTAATCAGACTTCTTtgtacaaa
tttgaatataaaaagaaaagaattaaaaaaacaattgaaaaatatcaaaa
gctgG Run BLAST on NCBI transcript from alignment at scaffold_5:145230..149329+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069415 ID=TCONS_00069415|Name=TCONS_00069415|organism=Clytia hemisphaerica|type=transcript|length=4100bp|location=Sequence derived from alignment at scaffold_5:145230..149329+ (Clytia hemisphaerica)
CCAGCCAGATGCTATCTctgaacttttttgaaaaacatttgcCTTTTGGT
AAGGATGTGATCTTTTTTTCATAACACAACGACATAAATTATGGgggatt
taaaagttttttttgtgtgtgAAAGATTGTCCGTGTTGTTTTTtcattaa
tgaaaaaaaatttttgacatgATTTTTATTGTACTGTTTTGTTGTAGAGT
AGGTCGCTGTGTGCAGACTTCTTTTTGCCTTATCACTCAAGACCTATGTA
ACAGATTCGTTTCCTACGAGTGTTTTGCATATATAGAACTTATTTTTGAA
GTGTGTTGGTTGGGTTTTCTCTCTCTGTACTCTTTCATTGTTTATGAGTT
TTTTattgagtttgaaaaaaatggagTTAGTTGTTTGTGTATGTTATTGA
GATGATatggacaatttttttttgtttgttgacAATTGCTTCGTGCGATA
AACGGCCGTAAATCGGTAACAGATTTTCCTTATGAAAACTGCACTAATGT
CCTTTAGAATAAATCTtgttaatgaaattttcatctgtaggtactatttc
atttttgttcttacaattttcaattcatcttttttcattcattcttcaat
ttctaattcaaatcttcttttcattgttttcagagaaaaagaaagaaaaa
gtaaacacaaagaaagaaaaacttttgaaaaattgatgaaaatatttttc
ggtggattcatttttcattggttTGGAAGTTGAATTTGTTCTTGGAAAGT
CGTTAtcatttgaaattgaaattttgtgatattatcaacaacaaaaaatg
gCTATCGCATCTGGTTTGACATGTGTCGATTATCTAGCGACAAATTTTCA
TTCgccaaattttgaagaaaaccaGCTCAGATACAGTCCGACATTATCTT
ACGACGATTTATACACAAACTACCTTTCCTCAAATCGGCAACAAAGTTTG
TACTACGACACTACAGCGCCACTGTTAGAATTCACAAGACTCTCGCTGGC
TGAAACAACATTCGATTTTACTTCGGTGAAAACACCAACTGTGGCCTCAA
ATAATGAATTTGCAAACGAATGcgagaaaatgaaagaaattttgaactcG
CCCAAGAAAACAACGGAGCATTGTGAAGTAACATCGGAACGANAAGAAAT
TTTGAATTCGCCCAAGAAAACAACGGAGCATTGTGAAGTAACATCGGAAC
GAGGGGTTATTCCGCCCTTTTCAGTAAACCGGTCATGCGAATGCCCCTCC
GGTAGTCCCCAATCCGATCTCGGATCAAAATTAAACAACGATTTCAATGA
TAGTGAAGATGAAGAAATTGGGGCGATTTTCGAAAGGGATGCTGGGAAGA
CTCAAAtccagcctcgttttgatgCAAACAGATTCAAATCGAGCAGTTTG
CcacattttaatttcttttcgaACGATTTTGAAAATGGCGGTTGCAGGGA
AGAGGAAGTTAGTGACAGTGAAATGGAATTGAACTCCATTAATAGCCATT
CCCGAACACCTTCAAAACCATGTGCTCATAATGCAACCGCATCATCAAGC
ACGCGCAAGAGACGCACGTCCGCCGATTACGTCATGCATTCAAATGGATT
TTCCACAGTTTTGAAAAGACCATGTATTGATGCTGAAAAAATGCATCGCT
CAATACGACGTTCGGGACTTCGATCTGGAACCAGGCGAAATATGGAAAGA
GAACTTTTCGTACCCATTGCGGGTAAAAAGTTGTAATAAATATAGATACG
CTAATTTGGAAAAAAAGCAAGGTAaatatcatctttttttatTCATGTAC
AATATATTATATCTATATAACCATCGAAGTTTACATACTtgaatttttta
caagttttgttcgttttttttctcgataaaTTGAGAACCATAGACCGATA
CACATAGCAACGTCTTTTGTAGGTCTTTGAGACGTCTTACTCGCAAAGCC
GTGACATCCgaaatagaaaaatttaaagTGCTTTTTAACATGGAGCGCAA
TATGttgttttttcatgaaattttatcTCGATTTTTTATGAATGAACATA
GATTTCTTATCAGTAGCTTATACTCTATGTTTAAGAGATATGTTTTCAAA
ACACGGCAGGGGTTCCAAAGCTCAATCAACTATTTTAACATATTTAGACA
GTTATGTGTCTTTGTGTGAAAAGAAAgcgttcttttttttcacgaCAATT
TTTGATTAGATAGTTATCAAAACTTTGAACGTAACAATATTAGGAACTTT
TTTTGATAACACTCTTTCCGAGCGAACAGTAGGGTTGCGCCATCTCATCT
CAtcgaaaaattcatcaaattgcCCAACGGaattttctttcaacttttta
ttcttttgaaaaCAAGTTTAAGAACATGCTGGAATACTTTTTACGAATAT
CCTCATTTATAATTTTTGTAGCTGGCCTACTTCATTTCGatcaataattt
tgaaataggGAAATTTATTAATTCCTAAAATTCATTATTCTAAATAAGAT
TATAGTCAAAAATTTAGAACAAACTctcttgttcttaatatgttgtTCTT
AATATGATGTTCTTAGAAAATGTTCCTAATCATAAGATGTGAAAGGgtaa
ttaaaaaagtaataCGTTGAGGCTTTCTGTGTATCGGATATTTACTTAAT
CAAATTGACAAAAGAACGATTGTCACTTTAAAATGAGCTTCCTCGTACCG
TATcttttcattgaataaaagagaaAGACAACTCCTCAATGTTTCTTTCG
AGGCGAGGCGCAGATTTTTTGAATGGGATTTGGGACTAAGCTTGGACTTT
GAACTCGCTCTTTTAGCAGCCCTATTTTATTTGTCCTTCTCTCAATCTAT
AATTGTCCAAACAAAGCTCATCTATGGACTCGCACCTTTTTATGTGATTA
CAGTAAGATCGATCATGTACAAGACCTTCATTTTTCTCCAGCCCGGTAGT
ttgtaaattgaaatatttataagtAGGGACTTTAAGATGGGGTCAGTAGG
atttagaaattatttttgtGGAAAATAGATTGCTTTTTACTATTGTTTGA
TTGCTTTTGATCTGTTTTATAGTTCAATATCgcaattttattttatgaat
ttttaaatcCAAATTCTTCCATATTAATTCTAAGCTTATacttattttga
tgttttcatgGCTGAATGACCAAATAAAagtatgtaaaatttatgaaatt
taaaTGAGGATTTTAACAACAAATCCCCTGAGCTTTTATAGGGGAATTGA
CCATTGAAGTTTTTGTcaaacaaaaatgaattttatttagtAACTTTTCC
CCATTTGTGGCTAACATTATACAGCAAAGCAAAATAGAAGAGCTTAACTT
ctgattgagaaaaaaagaaaatcctttcagctttttgttataaaaaagGC
GCTAAATCCTTTTGTTCAAAGCAATCTTATTAATCACTTTTTGTGATCTG
TCACTAACCAGGTGATGCTTCCAATTCCTGTAAAACTGTAAATTTATTGT
CAAAATTCgtatattattatatattacaatTTTTTGGGGGTTTTTAAAAA
GTAGgtattcaaaagatttttttttgaattttacctAGGTTTTTATCcag
gaattttattttattgcgTTGATAATCGGttcaaaatatatattcaaatt
ttttttcaaagactgtagatttttttttggataaaatatgTGCAATATTT
GGACAAAATTTATGCcggaaatttatatttttatcgcGATTTTTTGAAGT
CAATATATTTATGAGTTAATAATCCCTCTGCTTAAAGCATACCTTGTAAA
AGCTTGTGAATACTCGACACTTGAAAGGTTTAGCTCGTACCCAGTGAGTT
GAGTCTATTCACAAGGTACTGCAtataaaattttggaaaaacgaTGCTGT
TTTCTTACTTTTCATTGCAAGAGAGATATTATATATAGTATTAGTATATT
GTATTGATCacttattattattgttattattaaatATTGTAAAAGTTATT
ACTTATTTTAACGAGCTTATTGTTAATCAGACTTCTTtgtacaaatttga
atataaaaagaaaagaattaaaaaaacaattgaaaaatatcaaaagctgG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069415-exon-scaffold_5-1491911889:145230..145277 | TCONS_00069415-exon-scaffold_5-1491911889:145230..145277 | Clytia hemisphaerica | exon |
| TCONS_00069415-exon-scaffold_5-1510915933:145230..145277 | TCONS_00069415-exon-scaffold_5-1510915933:145230..145277 | Clytia hemisphaerica | exon |
| TCONS_00069415-exon-scaffold_5-1575043694:145230..145277 | TCONS_00069415-exon-scaffold_5-1575043694:145230..145277 | Clytia hemisphaerica | exon |
| TCONS_00069415-exon-scaffold_5-1491911889:145863..146361 | TCONS_00069415-exon-scaffold_5-1491911889:145863..146361 | Clytia hemisphaerica | exon |
| TCONS_00069415-exon-scaffold_5-1510915933:145863..146361 | TCONS_00069415-exon-scaffold_5-1510915933:145863..146361 | Clytia hemisphaerica | exon |
| TCONS_00069415-exon-scaffold_5-1575043694:145863..146361 | TCONS_00069415-exon-scaffold_5-1575043694:145863..146361 | Clytia hemisphaerica | exon |
| TCONS_00069415-exon-scaffold_5-1491911889:146422..149329 | TCONS_00069415-exon-scaffold_5-1491911889:146422..149329 | Clytia hemisphaerica | exon |
| TCONS_00069415-exon-scaffold_5-1510915933:146422..149329 | TCONS_00069415-exon-scaffold_5-1510915933:146422..149329 | Clytia hemisphaerica | exon |
| TCONS_00069415-exon-scaffold_5-1575043694:146422..149329 | TCONS_00069415-exon-scaffold_5-1575043694:146422..149329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:145230..149329 + |
Blast
The following BLAST results are available for this feature:
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