TCONS_00069418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069418
Unique NameTCONS_00069418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length982

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069418 ID=TCONS_00069418|Name=TCONS_00069418|organism=Clytia hemisphaerica|type=transcript|length=982bp
TGGGAAATTGTCTCGCTCATTCAATTATTCTTTAGAAAACAATGACATGG
CGCCAGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaa
attttttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGG
TATTTTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATAT
GTTATTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagatt
ttcaactttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATC
TCGATTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAG
GATGAACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGT
TGATAAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGG
AGAATTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAAC
AGAGCCAATATCAATATCTATTACACACTGGTGATGTTAGATCCCGATGC
ACCGAGTAGAAAAGATCCTTCACAAAGAAGTTGGCTTCATTGGCTCATTG
TAAACATTCATAATGCAGACATTTCGACTGGATTTGAAGTCGTAGAATAC
AACCCACCTACACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCT
TCTAATTGTTCagccaaagaaagaaaaagaatatcttCCAATCGTCAAGC
GTGGAAAGTTCAACATCAATAAATACGCAACTAATCATAGCTTGACAAAT
CTTGCGGGACTAAcatattttcaaactaaaaaagaaGATAAACTCCAACT
TCCAGCTAATGCAGATTGAGTGACAGAATAACAAATATGATATTTTAGGA
AGTATGTTAAAGACTTTCATTTGCAGTCGAAGAATTATTTATaaagatta
tatttttatacataactatggtggcccataag
Run BLAST on NCBI

transcript from alignment at scaffold_5:209565..212389+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069418 ID=TCONS_00069418|Name=TCONS_00069418|organism=Clytia hemisphaerica|type=transcript|length=2825bp|location=Sequence derived from alignment at scaffold_5:209565..212389+ (Clytia hemisphaerica)
TGGGAAATTGTCTCGCTCATTCAATTATTCTTTAGAAAACAATGACATGG
CGCCAGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaa
attttttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGG
TATTTTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATAT
GTTATTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagatt
ttcaactttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATC
TCGATTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAG
GATGAACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGT
TGATAAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGG
AGAATTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAAC
AGAGCCAATATCGTAAGCACATTTTTATAAAGCcctttgaagtcaaaaag
attCTATACACTAATGAAAGAATAAGAGAATAAGTCTAAATGAATAAATC
AGAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNccccccccccccccgggatcgTTGCAAAGCAAAACACTCT
CTAACCTTAATAATAATGGCATTTAGAATTTTTCGGTTCTCTAATGTAGT
ATGACGGCATTTGCAATTCTAACAGCCAACCCAAAGCTGCAATTCAGACT
AATAAATAAGCTGTCCTGTTTTGTTTTCAGAATATCTATTACACACTGGT
GATGTTAGATCCCGATGCACCGAGTAGAAAAGATCCTTCACAAAGAAGTT
GGCTTCATTGGCTCATTGTAAACATTCATGTAAGCAAAGTATCGAATGga
aataattttgaattaaattaaattaaaatagctggaaaaaaattcaagaa
aagttTTGGTAAATTTGGTAAACTTCTTATAATCAAGGCTACTCAGAACT
AAACTTGTTATCAATGAATGGTCTAgtaattcatgatatacaccattgca
atgtcttctgatattacatcatggacccaatagctgattggttgtaagtg
acgtaaaatcagtcaatacgtcacactttcaaccaatcagctattgggtt
cgtggaagacattgcaattctgcaatggtgcatatcatgaataccagATT
CCAAACCTTTTTTCTAGAATGCAGACATTTCGACTGGATTTGAAGTCGTA
GGTAAAAACATTTTACTCCATTAAATCTTGGTTATCAAAAGTAAAAGGCA
AACGGAATAACGAGGGATAACGGATAAATTTCCTGATAATTTCCAAGTTG
TTAAAAAGAGTATGGCttgtagtgtggtcgtgttacaaaaatacagactg
tttgtaggaaaaaataagatttagctgaaactttctccagaccttctcta
taggatgcttatatctcaggaaaaatcccctaaaatcccactggtggaac
atctcttttttgggcaatttcttttttccccaggcaaaatcctaagagcg
aaattttttgaaaatttcaaacttatttccagacgaaagctctcgaaaaa
ctatatagaagacttttaaacggttatagccgATTTCCTTACATAACTCA
AGACCCCACTATAATGATTTTGGAGGTATTCGAATCTCGTCAGAACATTC
AAATGAAAACGCAAAACTTCCGTGGTCGAGTGAGGTGCAAGTTATCACAT
GTGGATGAAATATTTACttattatttatcttttttcagAATACAACCCAC
CTACACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTTCTAATT
GTTCagccaaagaaagaaaaagaatatcttCCAATCGTCAAGCGTGGAAA
GTTCAACATCAATAAATACGCAACTAATCATAGCTTGACAAATCTTGCGG
GACTAAcatattttcaaactaaaaaagaaGATAAACTCCAACTTCCAGCT
AATGCAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAAGTATGT
TAAAGACTTTCATTTGCAGTCGAAGAATTATTTATaaagattatattttt
atacataactatggtggcccataag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043266XLOC_043266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069418-exon-scaffold_5-1491911889:209565..210076TCONS_00069418-exon-scaffold_5-1491911889:209565..210076Clytia hemisphaericaexon
TCONS_00069418-exon-scaffold_5-1510915933:209565..210076TCONS_00069418-exon-scaffold_5-1510915933:209565..210076Clytia hemisphaericaexon
TCONS_00069418-exon-scaffold_5-1575043694:209565..210076TCONS_00069418-exon-scaffold_5-1575043694:209565..210076Clytia hemisphaericaexon
TCONS_00069418-exon-scaffold_5-1491911889:211045..211143TCONS_00069418-exon-scaffold_5-1491911889:211045..211143Clytia hemisphaericaexon
TCONS_00069418-exon-scaffold_5-1510915933:211045..211143TCONS_00069418-exon-scaffold_5-1510915933:211045..211143Clytia hemisphaericaexon
TCONS_00069418-exon-scaffold_5-1575043694:211045..211143TCONS_00069418-exon-scaffold_5-1575043694:211045..211143Clytia hemisphaericaexon
TCONS_00069418-exon-scaffold_5-1491911889:211482..211515TCONS_00069418-exon-scaffold_5-1491911889:211482..211515Clytia hemisphaericaexon
TCONS_00069418-exon-scaffold_5-1510915933:211482..211515TCONS_00069418-exon-scaffold_5-1510915933:211482..211515Clytia hemisphaericaexon
TCONS_00069418-exon-scaffold_5-1575043694:211482..211515TCONS_00069418-exon-scaffold_5-1575043694:211482..211515Clytia hemisphaericaexon
TCONS_00069418-exon-scaffold_5-1491911889:212053..212389TCONS_00069418-exon-scaffold_5-1491911889:212053..212389Clytia hemisphaericaexon
TCONS_00069418-exon-scaffold_5-1510915933:212053..212389TCONS_00069418-exon-scaffold_5-1510915933:212053..212389Clytia hemisphaericaexon
TCONS_00069418-exon-scaffold_5-1575043694:212053..212389TCONS_00069418-exon-scaffold_5-1575043694:212053..212389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:209565..212389 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.333632	0	0.465421	27.2038	8.80512	2.41202	5.25622	0.880507	0	0	0.986642	0.261392	0	1.12619	0.683655	0	0.6603	1.66288	0	0.516713	0	1.58487	1.32306	0.862204	1.3762	0	0	0.216567	0
Blast
[Close]
BLAST of TCONS_00069418 vs. Swiss-Prot (Human)
Match: PEBP1 (Phosphatidylethanolamine-binding protein 1 OS=Homo sapiens GN=PEBP1 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.499e-20
Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = 3 
Query:  411 MEVTFAGVTV-VCGENYFLAGFNKKP-KVVLNRANINIYYTLVMLDPDAPSRKDPSQRSWLHWLIVNIHNADISTGFEVVEYNPPTPPKNSGFHRYVFLLIVQPKKEKEYLPIVK------RGKFNINKYATNHSLTNLAGLTYFQTKKED 839
            + VT+AG  V   G+         +P  +  +  +    YTLV+ DPDAPSRKDP  R W H+L+VN+   DIS+G  + +Y    PPK +G HRYV+L+  Q +  K   PI+       RGKF +  +   + L      T +Q + +D
Sbjct:   25 LHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDD 175
The following BLAST results are available for this feature:
BLAST of TCONS_00069418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PEBP11.499e-2035.10Phosphatidylethanolamine-binding protein 1 OS=Homo... [more]
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