|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069418 ID=TCONS_00069418|Name=TCONS_00069418|organism=Clytia hemisphaerica|type=transcript|length=982bp
TGGGAAATTGTCTCGCTCATTCAATTATTCTTTAGAAAACAATGACATGG
CGCCAGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaa
attttttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGG
TATTTTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATAT
GTTATTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagatt
ttcaactttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATC
TCGATTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAG
GATGAACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGT
TGATAAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGG
AGAATTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAAC
AGAGCCAATATCAATATCTATTACACACTGGTGATGTTAGATCCCGATGC
ACCGAGTAGAAAAGATCCTTCACAAAGAAGTTGGCTTCATTGGCTCATTG
TAAACATTCATAATGCAGACATTTCGACTGGATTTGAAGTCGTAGAATAC
AACCCACCTACACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCT
TCTAATTGTTCagccaaagaaagaaaaagaatatcttCCAATCGTCAAGC
GTGGAAAGTTCAACATCAATAAATACGCAACTAATCATAGCTTGACAAAT
CTTGCGGGACTAAcatattttcaaactaaaaaagaaGATAAACTCCAACT
TCCAGCTAATGCAGATTGAGTGACAGAATAACAAATATGATATTTTAGGA
AGTATGTTAAAGACTTTCATTTGCAGTCGAAGAATTATTTATaaagatta
tatttttatacataactatggtggcccataag Run BLAST on NCBI transcript from alignment at scaffold_5:209565..212389+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069418 ID=TCONS_00069418|Name=TCONS_00069418|organism=Clytia hemisphaerica|type=transcript|length=2825bp|location=Sequence derived from alignment at scaffold_5:209565..212389+ (Clytia hemisphaerica)
TGGGAAATTGTCTCGCTCATTCAATTATTCTTTAGAAAACAATGACATGG
CGCCAGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaa
attttttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGG
TATTTTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATAT
GTTATTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagatt
ttcaactttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATC
TCGATTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAG
GATGAACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGT
TGATAAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGG
AGAATTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAAC
AGAGCCAATATCGTAAGCACATTTTTATAAAGCcctttgaagtcaaaaag
attCTATACACTAATGAAAGAATAAGAGAATAAGTCTAAATGAATAAATC
AGAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNccccccccccccccgggatcgTTGCAAAGCAAAACACTCT
CTAACCTTAATAATAATGGCATTTAGAATTTTTCGGTTCTCTAATGTAGT
ATGACGGCATTTGCAATTCTAACAGCCAACCCAAAGCTGCAATTCAGACT
AATAAATAAGCTGTCCTGTTTTGTTTTCAGAATATCTATTACACACTGGT
GATGTTAGATCCCGATGCACCGAGTAGAAAAGATCCTTCACAAAGAAGTT
GGCTTCATTGGCTCATTGTAAACATTCATGTAAGCAAAGTATCGAATGga
aataattttgaattaaattaaattaaaatagctggaaaaaaattcaagaa
aagttTTGGTAAATTTGGTAAACTTCTTATAATCAAGGCTACTCAGAACT
AAACTTGTTATCAATGAATGGTCTAgtaattcatgatatacaccattgca
atgtcttctgatattacatcatggacccaatagctgattggttgtaagtg
acgtaaaatcagtcaatacgtcacactttcaaccaatcagctattgggtt
cgtggaagacattgcaattctgcaatggtgcatatcatgaataccagATT
CCAAACCTTTTTTCTAGAATGCAGACATTTCGACTGGATTTGAAGTCGTA
GGTAAAAACATTTTACTCCATTAAATCTTGGTTATCAAAAGTAAAAGGCA
AACGGAATAACGAGGGATAACGGATAAATTTCCTGATAATTTCCAAGTTG
TTAAAAAGAGTATGGCttgtagtgtggtcgtgttacaaaaatacagactg
tttgtaggaaaaaataagatttagctgaaactttctccagaccttctcta
taggatgcttatatctcaggaaaaatcccctaaaatcccactggtggaac
atctcttttttgggcaatttcttttttccccaggcaaaatcctaagagcg
aaattttttgaaaatttcaaacttatttccagacgaaagctctcgaaaaa
ctatatagaagacttttaaacggttatagccgATTTCCTTACATAACTCA
AGACCCCACTATAATGATTTTGGAGGTATTCGAATCTCGTCAGAACATTC
AAATGAAAACGCAAAACTTCCGTGGTCGAGTGAGGTGCAAGTTATCACAT
GTGGATGAAATATTTACttattatttatcttttttcagAATACAACCCAC
CTACACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTTCTAATT
GTTCagccaaagaaagaaaaagaatatcttCCAATCGTCAAGCGTGGAAA
GTTCAACATCAATAAATACGCAACTAATCATAGCTTGACAAATCTTGCGG
GACTAAcatattttcaaactaaaaaagaaGATAAACTCCAACTTCCAGCT
AATGCAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAAGTATGT
TAAAGACTTTCATTTGCAGTCGAAGAATTATTTATaaagattatattttt
atacataactatggtggcccataag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069418-exon-scaffold_5-1491911889:209565..210076 | TCONS_00069418-exon-scaffold_5-1491911889:209565..210076 | Clytia hemisphaerica | exon |
| TCONS_00069418-exon-scaffold_5-1510915933:209565..210076 | TCONS_00069418-exon-scaffold_5-1510915933:209565..210076 | Clytia hemisphaerica | exon |
| TCONS_00069418-exon-scaffold_5-1575043694:209565..210076 | TCONS_00069418-exon-scaffold_5-1575043694:209565..210076 | Clytia hemisphaerica | exon |
| TCONS_00069418-exon-scaffold_5-1491911889:211045..211143 | TCONS_00069418-exon-scaffold_5-1491911889:211045..211143 | Clytia hemisphaerica | exon |
| TCONS_00069418-exon-scaffold_5-1510915933:211045..211143 | TCONS_00069418-exon-scaffold_5-1510915933:211045..211143 | Clytia hemisphaerica | exon |
| TCONS_00069418-exon-scaffold_5-1575043694:211045..211143 | TCONS_00069418-exon-scaffold_5-1575043694:211045..211143 | Clytia hemisphaerica | exon |
| TCONS_00069418-exon-scaffold_5-1491911889:211482..211515 | TCONS_00069418-exon-scaffold_5-1491911889:211482..211515 | Clytia hemisphaerica | exon |
| TCONS_00069418-exon-scaffold_5-1510915933:211482..211515 | TCONS_00069418-exon-scaffold_5-1510915933:211482..211515 | Clytia hemisphaerica | exon |
| TCONS_00069418-exon-scaffold_5-1575043694:211482..211515 | TCONS_00069418-exon-scaffold_5-1575043694:211482..211515 | Clytia hemisphaerica | exon |
| TCONS_00069418-exon-scaffold_5-1491911889:212053..212389 | TCONS_00069418-exon-scaffold_5-1491911889:212053..212389 | Clytia hemisphaerica | exon |
| TCONS_00069418-exon-scaffold_5-1510915933:212053..212389 | TCONS_00069418-exon-scaffold_5-1510915933:212053..212389 | Clytia hemisphaerica | exon |
| TCONS_00069418-exon-scaffold_5-1575043694:212053..212389 | TCONS_00069418-exon-scaffold_5-1575043694:212053..212389 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:209565..212389 + |
Blast
BLAST of TCONS_00069418 vs. Swiss-Prot (Human)
Match: PEBP1 (Phosphatidylethanolamine-binding protein 1 OS=Homo sapiens GN=PEBP1 PE=1 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 1.499e-20 Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = 3
Query: 411 MEVTFAGVTV-VCGENYFLAGFNKKP-KVVLNRANINIYYTLVMLDPDAPSRKDPSQRSWLHWLIVNIHNADISTGFEVVEYNPPTPPKNSGFHRYVFLLIVQPKKEKEYLPIVK------RGKFNINKYATNHSLTNLAGLTYFQTKKED 839
+ VT+AG V G+ +P + + + YTLV+ DPDAPSRKDP R W H+L+VN+ DIS+G + +Y PPK +G HRYV+L+ Q + K PI+ RGKF + + + L T +Q + +D
Sbjct: 25 LHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDD 175
The following BLAST results are available for this feature:
|
