|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069422 ID=TCONS_00069422|Name=TCONS_00069422|organism=Clytia hemisphaerica|type=transcript|length=1090bp
AGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaaattt
tttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGGTATT
TTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATATGTTA
TTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagattttca
actttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATCTCGA
TTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAGGATG
AACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGTTGAT
AAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGGAGAA
TTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAACAGAG
CCAATATCAATATCTATTACACACTGGTGATGTTAGATCCCGATGCACCG
AGTAGAAAAGATCCTTCACAAAGAAGTTGGCTTCATTGGCTCATTGTAAA
CATTCATAATGCAGACATTTCGACTGGATTTGAAGTCGTAGAATACAACC
CACCTACACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTTCTA
ATTGTTCagccaaagaaagaaaaagaatatcttCCAATCGTCAAGCGTGG
AAAGTTCAACATCAATAAATACGCAACTAATCATAGCTTGACAAATCTTG
CGGGACTAAcatattttcaaactaaaaaagaaGATAAACTCCAACTTCCA
GCTAATGCAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAACCC
ATCAGTGCCAAAGacataccgtgaaaagcacaggtcgaaatcatatatcg
acgctgtgccgacgaatcgagattctattcagcgcgcaatcaacgaagat
aaaagtaaccatgacgaccatccaagatcttggatgaagttcaaagttga
tatttttattcccgtcgttgaaaacgcaactaaaaaatatcatcaatgct
ttttaagaagagtcagtgatagagaatcataacataaagt Run BLAST on NCBI protein sequence of TCONS_00069422-protein >TCONS_00069422-protein ID=TCONS_00069422-protein|Name=TCONS_00069422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MMNLKLAQNINMRFSTFCCSLLFVFAINFDLDSFVKAHDEDSDGIEEDEH
LVHIGNIDKDSCTVDKEMEVTFAGVTVVCGENYFLAGFNKKPKVVLNRAN
INIYYTLVMLDPDAPSRKDPSQRSWLHWLIVNIHNADISTGFEVVEYNPP
TPPKNSGFHRYVFLLIVQPKKEKEYLPIVKRGKFNINKYATNHSLTNLAG
LTYFQTKKEDKLQLPANAD Run BLAST on NCBI transcript from alignment at scaffold_5:209619..214109+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069422 ID=TCONS_00069422|Name=TCONS_00069422|organism=Clytia hemisphaerica|type=transcript|length=4491bp|location=Sequence derived from alignment at scaffold_5:209619..214109+ (Clytia hemisphaerica)
AGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaaattt
tttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGGTATT
TTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATATGTTA
TTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagattttca
actttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATCTCGA
TTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAGGATG
AACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGTTGAT
AAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGGAGAA
TTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAACAGAG
CCAATATCGTAAGCACATTTTTATAAAGCcctttgaagtcaaaaagattC
TATACACTAATGAAAGAATAAGAGAATAAGTCTAAATGAATAAATCAGAG
AAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNccccccccccccccgggatcgTTGCAAAGCAAAACACTCTCTAA
CCTTAATAATAATGGCATTTAGAATTTTTCGGTTCTCTAATGTAGTATGA
CGGCATTTGCAATTCTAACAGCCAACCCAAAGCTGCAATTCAGACTAATA
AATAAGCTGTCCTGTTTTGTTTTCAGAATATCTATTACACACTGGTGATG
TTAGATCCCGATGCACCGAGTAGAAAAGATCCTTCACAAAGAAGTTGGCT
TCATTGGCTCATTGTAAACATTCATGTAAGCAAAGTATCGAATGgaaata
attttgaattaaattaaattaaaatagctggaaaaaaattcaagaaaagt
tTTGGTAAATTTGGTAAACTTCTTATAATCAAGGCTACTCAGAACTAAAC
TTGTTATCAATGAATGGTCTAgtaattcatgatatacaccattgcaatgt
cttctgatattacatcatggacccaatagctgattggttgtaagtgacgt
aaaatcagtcaatacgtcacactttcaaccaatcagctattgggttcgtg
gaagacattgcaattctgcaatggtgcatatcatgaataccagATTCCAA
ACCTTTTTTCTAGAATGCAGACATTTCGACTGGATTTGAAGTCGTAGGTA
AAAACATTTTACTCCATTAAATCTTGGTTATCAAAAGTAAAAGGCAAACG
GAATAACGAGGGATAACGGATAAATTTCCTGATAATTTCCAAGTTGTTAA
AAAGAGTATGGCttgtagtgtggtcgtgttacaaaaatacagactgtttg
taggaaaaaataagatttagctgaaactttctccagaccttctctatagg
atgcttatatctcaggaaaaatcccctaaaatcccactggtggaacatct
cttttttgggcaatttcttttttccccaggcaaaatcctaagagcgaaat
tttttgaaaatttcaaacttatttccagacgaaagctctcgaaaaactat
atagaagacttttaaacggttatagccgATTTCCTTACATAACTCAAGAC
CCCACTATAATGATTTTGGAGGTATTCGAATCTCGTCAGAACATTCAAAT
GAAAACGCAAAACTTCCGTGGTCGAGTGAGGTGCAAGTTATCACATGTGG
ATGAAATATTTACttattatttatcttttttcagAATACAACCCACCTAC
ACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTTCTAATTGTTC
agccaaagaaagaaaaagaatatcttCCAATCGTCAAGCGTGGAAAGTTC
AACATCAATAAATACGCAACTAATCATAGCTTGACAAATCTTGCGGGACT
AAcatattttcaaactaaaaaagaaGATAAACTCCAACTTCCAGCTAATG
CAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAAGTATGTTAAA
GACTTTCATTTGCAGTCGAAGAATTATTTATaaagattatatttttatac
ataactatggtggcccataagtgccaagtaattttttcttgaaaaactca
aaaaaaaatttttttatacatgaaaataactttcattCTACAATTTAAAT
TGGCTctcatttcaaaatcaatttaaaagtaatttcgttttcaaaatggc
tttaaaaacaacttaaaataCGACCCAGCAAGGCCACACAAatgatttaa
attttgttttaattNNNNNNNNNNNNNNacactttcaaccaatcagctat
tgggttcgtggaagacattgcaattctgcaatggtgcatatcatgaatac
cagATTCCAAACCTTTTTTCTAGAATGCAGACATTTCGACTGGATTTGAA
GTCGTAGGTAAAAACATTTTACTCCATTAAATCTTGGTTATCAAAAGTAA
AAGGCAAACGGAATAACGAGGGATAACGGATAAATTTCCTGATAATTTCC
AAGTTGTTAAAAAGAGTATGGCttgtagtgtggtcgtgttacaaaaatac
agactgtttgtaggaaaaaataagatttagctgaaactttctccagacct
tctctataggatgcttatatctcaggaaaaatcccctaaaatcccactgg
tggaacatctcttttttgggcaatttcttttttccccaggcaaaatccta
agagcgaaattttttgaaaatttcaaacttatttccagacgaaagctctc
gaaaaactatatagaagacttttaaacggttatagccgATTTCCTTACAT
AACTCAAGACCCCACTATAATGATTTTGGAGGTATTCGAATCTCGTCAGA
ACATTCAAATGAAAACGCAAAACTTCCGTGGTCGAGTGAGGTGCAAGTTA
TCACATGTGGATGAAATATTTACttattatttatcttttttcagAATACA
ACCCACCTACACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTT
CTAATTGTTCagccaaagaaagaaaaagaatatcttCCAATCGTCAAGCG
TGGAAAGTTCAACATCAATAAATACGCAACTAATCATAGCTTGACAAATC
TTGCGGGACTAAcatattttcaaactaaaaaagaaGATAAACTCCAACTT
CCAGCTAATGCAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAA
GTATGTTAAAGACTTTCATTTGCAGTCGAAGAATTATTTATaaagattat
atttttatacataactatggtggcccataagtgccaagtaattttttatt
gaaaaactcaaaaaaaaatttttttatacatgaaaataactttcattCTA
CAATTTAAATTGGCTctcatttcaaaatcaatttaaaagtaatttcgttt
tcaaaatggctttaaaaacaacttaaaataCGACCCAGCAAGGCCACACA
Aatgatttaaattttgttttaattctcatttacttttcgatatcatttta
aaaagcattttgtttttttttattttcaaaatcactTTTCTCACGTAGCC
CATCAGTGCCAAAGacataccgtgaaaagcacaggtcgaaatcatatatc
gacgctgtgccgacgaatcgagattctattcagcgcgcaatcaacgaaga
taaaagtaaccatgacgaccatccaagatcttggatgaagttcaaagttg
atatttttattcccgtcgttgaaaacgcaactaaaaaatatcatcaatgc
tttttaagaagagtcagtgatagagaatcataacataaagt Coding sequence (CDS) from alignment at scaffold_5:209619..214109+ >TCONS_00069422 ID=TCONS_00069422|Name=TCONS_00069422|organism=Clytia hemisphaerica|type=CDS|length=2640bp|location=Sequence derived from alignment at scaffold_5:209619..214109+ (Clytia hemisphaerica)
ATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagattttcaacttt
ttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATCTCGATTCCT
TCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAGGATGAACAT
TTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGTTGATAAAGA
AATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGGAGAATTATT
TTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAACAGAGCCAAT
ATCAATATCTATTACACACTGGTGATGTTAGATCCCGATGCACCGAGTAG
AAAAGATCCTTCACAAAGAAGTTGGCTTCATTGGCTCATTGTAAACATTC
ATAATGCAGACATTTCGACTGGATTTGAAGTCGTAGAATACAACCCACCT
ACACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTTCTAATTGT
TCagccaaagaaagaaaaagaatatcttCCAATCGTCAAGCGTGGAAAGT
TCAACATCAATAAATACGCAACTAATCATAGCTTGACAAATCTTGCGGGA
CTAAcatattttcaaactaaaaaagaaGATAAACTCCAACTTCCAGCTAA
TGCAGATTGAATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagat
tttcaactttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGAT
CTCGATTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGA
GGATGAACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAG
TTGATAAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGG
GAGAATTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAA
CAGAGCCAATATCAATATCTATTACACACTGGTGATGTTAGATCCCGATG
CACCGAGTAGAAAAGATCCTTCACAAAGAAGTTGGCTTCATTGGCTCATT
GTAAACATTCATAATGCAGACATTTCGACTGGATTTGAAGTCGTAGAATA
CAACCCACCTACACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCC
TTCTAATTGTTCagccaaagaaagaaaaagaatatcttCCAATCGTCAAG
CGTGGAAAGTTCAACATCAATAAATACGCAACTAATCATAGCTTGACAAA
TCTTGCGGGACTAAcatattttcaaactaaaaaagaaGATAAACTCCAAC
TTCCAGCTAATGCAGATTGAATGATGAACTTAAAGCTGGCTCAAAATATC
AACATgagattttcaactttttgctgTTCTTTGCTTTTTGTTTTTGCAAT
AAACTTTGATCTCGATTCCTTCGTGAAAGCCCACGATGAAGATTCTGATG
GGATTGAAGAGGATGAACATTTGGTTCATATTGGAAACATTGACAAAGAC
TCTTGTACAGTTGATAAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGT
GGTTTGTGGGGAGAATTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAG
TGGTACTTAACAGAGCCAATATCAATATCTATTACACACTGGTGATGTTA
GATCCCGATGCACCGAGTAGAAAAGATCCTTCACAAAGAAGTTGGCTTCA
TTGGCTCATTGTAAACATTCATAATGCAGACATTTCGACTGGATTTGAAG
TCGTAGAATACAACCCACCTACACCACCCAAAAACTCCGGTTTCCATCGC
TACGTATTCCTTCTAATTGTTCagccaaagaaagaaaaagaatatcttCC
AATCGTCAAGCGTGGAAAGTTCAACATCAATAAATACGCAACTAATCATA
GCTTGACAAATCTTGCGGGACTAAcatattttcaaactaaaaaagaaGAT
AAACTCCAACTTCCAGCTAATGCAGATTGAATGATGAACTTAAAGCTGGC
TCAAAATATCAACATgagattttcaactttttgctgTTCTTTGCTTTTTG
TTTTTGCAATAAACTTTGATCTCGATTCCTTCGTGAAAGCCCACGATGAA
GATTCTGATGGGATTGAAGAGGATGAACATTTGGTTCATATTGGAAACAT
TGACAAAGACTCTTGTACAGTTGATAAAGAAATGGAGGTCACTTTCGCAG
GCGTGACTGTGGTTTGTGGGGAGAATTATTTTTTGGCTGGGTTCAATAAG
AAACCGAAAGTGGTACTTAACAGAGCCAATATCAATATCTATTACACACT
GGTGATGTTAGATCCCGATGCACCGAGTAGAAAAGATCCTTCACAAAGAA
GTTGGCTTCATTGGCTCATTGTAAACATTCATAATGCAGACATTTCGACT
GGATTTGAAGTCGTAGAATACAACCCACCTACACCACCCAAAAACTCCGG
TTTCCATCGCTACGTATTCCTTCTAATTGTTCagccaaagaaagaaaaag
aatatcttCCAATCGTCAAGCGTGGAAAGTTCAACATCAATAAATACGCA
ACTAATCATAGCTTGACAAATCTTGCGGGACTAAcatattttcaaactaa
aaaagaaGATAAACTCCAACTTCCAGCTAATGCAGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069422-exon-scaffold_5-1491911889:209619..210076 | TCONS_00069422-exon-scaffold_5-1491911889:209619..210076 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1510915933:209619..210076 | TCONS_00069422-exon-scaffold_5-1510915933:209619..210076 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1575043694:209619..210076 | TCONS_00069422-exon-scaffold_5-1575043694:209619..210076 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1491911889:211045..211143 | TCONS_00069422-exon-scaffold_5-1491911889:211045..211143 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1510915933:211045..211143 | TCONS_00069422-exon-scaffold_5-1510915933:211045..211143 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1575043694:211045..211143 | TCONS_00069422-exon-scaffold_5-1575043694:211045..211143 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1491911889:212692..212725 | TCONS_00069422-exon-scaffold_5-1491911889:212692..212725 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1510915933:212692..212725 | TCONS_00069422-exon-scaffold_5-1510915933:212692..212725 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1575043694:212692..212725 | TCONS_00069422-exon-scaffold_5-1575043694:212692..212725 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1491911889:213263..213518 | TCONS_00069422-exon-scaffold_5-1491911889:213263..213518 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1510915933:213263..213518 | TCONS_00069422-exon-scaffold_5-1510915933:213263..213518 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1575043694:213263..213518 | TCONS_00069422-exon-scaffold_5-1575043694:213263..213518 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1491911889:213867..214109 | TCONS_00069422-exon-scaffold_5-1491911889:213867..214109 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1510915933:213867..214109 | TCONS_00069422-exon-scaffold_5-1510915933:213867..214109 | Clytia hemisphaerica | exon |
| TCONS_00069422-exon-scaffold_5-1575043694:213867..214109 | TCONS_00069422-exon-scaffold_5-1575043694:213867..214109 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:209619..214109 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008914 | PEBP |
Blast
BLAST of TCONS_00069422 vs. Swiss-Prot (Human)
Match: PEBP1 (Phosphatidylethanolamine-binding protein 1 OS=Homo sapiens GN=PEBP1 PE=1 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 2.168e-20 Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = 3
Query: 357 MEVTFAGVTV-VCGENYFLAGFNKKP-KVVLNRANINIYYTLVMLDPDAPSRKDPSQRSWLHWLIVNIHNADISTGFEVVEYNPPTPPKNSGFHRYVFLLIVQPKKEKEYLPIVK------RGKFNINKYATNHSLTNLAGLTYFQTKKED 785
+ VT+AG V G+ +P + + + YTLV+ DPDAPSRKDP R W H+L+VN+ DIS+G + +Y PPK +G HRYV+L+ Q + K PI+ RGKF + + + L T +Q + +D
Sbjct: 25 LHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDD 175
The following BLAST results are available for this feature:
|
