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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069432 ID=TCONS_00069432|Name=TCONS_00069432|organism=Clytia hemisphaerica|type=transcript|length=3947bp
GTTTTCGAGAACATTCTAGAGTTGATTACCGCATCAATAAGCAGTTTCAA
AAGAGGGGGAGAGTCAAAGTTACGTCAGTCCATTTTTTTGTAATCGGATA
AGAGATTTTATGATGAGCGAATCAGTTTTCTTTTGTCTTGTCAATTCTAT
AAAAACTGTGAACTGTTCATGAAAAATTCAGTACACATCACAACACATTG
AGAGTAAACATTGAAGAAAAACTTCTCAACACTTCACAAATCAAGATGCA
AATTTTCGTCAAGACTTTGACTGGTAAAACCATCACTTTAGAAGTCGAAC
CAAGTGATACCATTGACAACgtcaaagccaaaattcaaGATAAAGAAGGA
ATCCCACCAGATCAACAACGTTTGATCTTCGCTGGCAAACAATTAGAAGA
TGGCCGAACCCTTTCAGACTACAACATCCAGAAAGAATCAACCCTTCACT
TGGTCTTGCGATTGAGAGGAGGTATGCAAATCTTCGTCAAAACCTTGACT
GGCAAAACCATCACTTTGGAAGTCGAACCAAGTGATACCATCGACAACgt
caaagccaaaattcaaGATAAAGAAGGAATCCCACCAGATCAACAACGTT
TGATCTTCGCTGGTAAACAATTAGAAGATGGCCGAACCCTTTCCGACTAC
AACATCCAAAAAGAATCAACCCTTCACTTGGTCTTGCGCCTCCGTGGTGG
ACAATAACTTTTATTATCCTCATAACTTCCTTTGtaactttttgtaaatt
tagcatttaaaaaaacccaaaaaataaGAGCACAAATcttaatcgaaaaa
aaaatcataacactgtcgtttatttttttttttttgattattttcctcCT
GTTTCGACTCATCAAGTGAACTTAcatttaatttttgaaagttgatTTTG
ACCAGTTCTTAAATGAAACGTCCCTTTTCTAGGCTTAATGTCATTGATTG
TCGttgattttcattgaaattaagCTATTTTCGCGAATGATTATGCatcc
tttaaaaaattttgaacaggGTAATTCGCAAATCTGTCCCAGCCAAAAAA
TCCTTTAAAACTTCTAAAAAGGCACAAAATAGTCTTAAACAGTATTTCGG
GACCCTAAAATGCCTAAACTTTCACGGATTTTGCCCTCTTCGTAAAAAAT
TGATACAAATCGATGAAGCTTCGAAATCACAATAAACTGGTACCTGTTTT
CAGCCCTCaaattgaaaaacaacaaatttgaGTGAATTCAAAATGTGTGG
AAGATGTTTAAACCAACCTGCAAAGGGTCNtgaaaaacaacaaatttgaG
TGAATTCAAAATGTGTGGAAGATGTTTAAACCATCCTGCAAAGGGttatt
tttactctttacgACTTTTGATATGGTATTCTAAATCTTACGAGAGGATC
TAATTTTTTGTCCGGTACTACCGgatgacccacgaaaaagtataagagtt
tggagggaaaaattaaattttaactaatttcttttttcatggtaaagagg
aaaggcaaacttaaattttaatgtatcatattttaattttggaaaagtag
ttatcgagatatggaggtataaagtcaaaagtcattataaaacacagtca
aaaaacaaataaaaagagaCATCGAGTGAGAAgcatattttgatttcttt
tgccGGAAGGATTCAGAAAAGAATAACAAAGGTTGACAattcttttttat
gatattcATTCATTTGGAAAAATACGACCCCTAGCATTAATATAGCGACG
AGCCCTAGAAGTAATTCCATCGAAAGCGCCTCTGATCATTTCCTGATCTG
AGTTGTTACAAGCTCTGACGATTGCTGCTTTCAACTGATTGATGGTTagg
cattttgaaaaaaattctttatgcTACTTTTGGTACTTTTCATTTATTCC
CAAAAGAACGATTTGGGAATTGTCTAAAATTCGATAGACAAAGAAATAGC
AAATGATCAAAGGAAAGTTGTTTGTTCTGATACAAATTtgatactgtctt
ttttgacgttttttgactgtttttttataatgacttttgactttatacct
ccatatctcgataactacttttccaaaattaaaaaattgatacatcaaaa
ttttaagtttgcctttcctctttaccatgaaaagagaatttttttctgaC
ACAGTCACCCTCCAAACTCTTACattttttcgtgggtcacccggtagggT
TGGCCAAGCTTGACGTTAATACTCTCAGATTTACGAAATGCGACCGAACT
TTTCGACCTTGCGACAGTTTGTAATACCGCCTAAGTTAAAGTcattgaaa
atgcttttgaagaGGAGTGTAATTCGCGAGAAGTCTATGCTCGCCAAAAA
ATCTTTGTAATCTTGTAAAACAATATTCTAACTTCAAAATCGTAAAGTTT
CATTGCATTATTAGCCTTTACAGTAAAGGCCTTTTTAAACTCAAAGAACA
ACCGTTTTTATCGGATTCGAGGATCGTTTGTCGCTTTTTACTATTATGTT
TACGattaaattaatatttttgaataattgtTTCACAGTGATGATAATGA
TACAAGAATCCAAGAATCAGTGTTGTCAAAATTGTGATAGCTACGCACTT
CTTCACAAAGTTGatttctttcttcattttcgattttttttatatgtatt
ttgtttttcttttcaagaagACGAAAACCGAATCTTTTATATGATAGCAT
ACGGCTTCTATCCATTTCTcgacaaaaatatgttccatcATTCGTCATAT
TTCTCACCTTTCTTTCAGGCAATGGCACAGATCCAGATAACAGCAACAGT
ACAATCACCATGAACTCTTCGTCTTCCATCATCATGCCCTCTTCGTCTTC
CATCAACGTGTCTTCTACATTGTCCACAGAATCTGTCTCAATGAACGTCA
CCGTCTCCCCAAATGTTTCATCGTCGGCAACAATGAATGAAACATCGTCC
GTCGTTTCGCCCTCCTCTTCTTCATCCACCGTTGCCTCCTCCACTGTGGC
TCCACCCACTACCACCACTACAACCAAAATGCCACCAAAGAAAGGAAGTG
GGCGCCGCTTTGATACCGGTTCGTTTATCGGTGGAATGTTTGTCATGATC
TTCGTGATCGGATTGGTTTATTTCATTCGCAAGTTATACAAGCGAAGAAA
CCCGAACTACTCCACACTCCACTAAACCGATTAACATTCTCGTCATTAAG
TTTTTACTGATGATGACGACACATAAACACTTACACTATTTTTATGCATT
GATCTTTGGAggtataattttcttttctcaGCTTGTATAATTGTAATACT
TTTAGAAATagataactttttgttttttaaccGCATCTTAGGTGTAGGAC
TTATTTGGTTATGTTaagtttttttgtatgttttaaaatattgttttgta
tattttatgtttgaggACTATGTATAATGCTAATCATTTTTATAGTGGAT
TTCATGACATTATAGAATATACACGAAGCCAGATCGTATCTGtaggaaat
aataaaaatggttttaaataatttgactAACATCCGGTCAATATTCAACT
TGTTTTTAAGCCTATTTTAGTTTTCAAGCCACAGTTTGGAGTTAATTGCA
TGGTTAATAAATTCTCTTTTGTTCCGCTCACCTGAACGAGGTAATGGAGC
CATGGCCTTTGTATTTTAgatttctttgtttgtttgtaagAGACTACGCT
TaggtttttgtaatttctttcttttatttttaatttgtgCACCCGCTTAA
TggtatacattttttatttatttgtttatttttggtttttgataAGATTC
TGGTTTTTAGTTGCAAAAGGTAATTAATGCATTCGtgttaatgtcaaaaa
ttcGTTCTACGATTTCCTGTTCGCCAAACGTTTAATATACTCACTTTGCA
TCagcaaattttattattgctaAAATTAACTATTTCGGTCAATAGCT Run BLAST on NCBI transcript from alignment at scaffold_5:56860..61392- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069432 ID=TCONS_00069432|Name=TCONS_00069432|organism=Clytia hemisphaerica|type=transcript|length=4533bp|location=Sequence derived from alignment at scaffold_5:56860..61392- (Clytia hemisphaerica)
GTTTTCGAGAACATTCTAGAGTTGATTACCGCATCAATAAGCAGTTTCAA
AAGAGGGGGAGAGTCAAAGTTACGTCAGTCCATTTTTTTGTAATCGGATA
AGAGATTTTATGATGAGCGAATCAGTTTTCTTTTGTCTTGTCAATTCTAT
AAAAACTGTGAACTGTTCATGAAAAATTCAGTACACATCACAACACATTG
AGAGTAAACATTGAAGAAAAACTTCTCAACACTTCACAAATCAAGATGCA
AATTTTCGTCAAGACTTTGACTGGTAAAACCATCACTTTAGAAGTCGAAC
CAAGTGATACCATTGACAACGTCAAAGCCAAAATTCAAGATAAAGAAGGA
ATCCCACCAGATCAACAACGTTTGATCTTCGCTGGCAAACAATTAGAAGA
TGGCCGAACCCTTTCAGACTACAACATCCAGAAAGAATCAACCCTTCACT
TGGTCTTGCGATTGAGAGGAGGTATGCAAATTTTCGTCAAGACTTTGACT
GGTAAAACCATCACTTTAGNCTGTTCATGAAAAATTCAGTACACATCACA
ACACATTGAGAGTAAACATTGAAGAAAAACTTCTCAACACTTCACAAATC
AAGATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACCATCACTTTAGA
AGTCGAACCAAGTGATACCATTGACAACGTCAAAGCCAAAATTCAAGATA
AAGAAGGAATCCCACCAGATCAACAACGTTTGATCTTCGCGGGCAAACAA
TTAGAAGATGGCCGAACCCTTTCAGACTACAACATCCAGAAAGAATCAAC
CCTTCACTTGGTTTTGCGATTGAGAGGAGGTATGCAAATTTTCGTCAAGA
CTTTGACTGGTAAAACCATCACTTTAGAAGTCGAACCAAGTGATACCATC
GACAACGTCAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGACCA
ACAACGTTTGATCTTCGCTGGCAAACAATTAGAAGATGGCCGAACCCTTT
CCGATTACAACATCCAAAAAGAATCAACCCTTCACTTGGTCTTGCGATTG
AGAGGAGGTATGCAAATCTTCGTCAAAACCTTGACTGGCAAAACCATCAC
TTTGGAAGTCGAACCAAGTGATACCATCGACAACGTCAAAGCCAAAATTC
AAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATCTTCGCTGGT
AAACAATTAGAAGATGGCCGAACCCTTTCCGACTACAACATCCAAAAAGA
ATCAACCCTTCACTTGGTCTTGCGCCTCCGTGGTGGACAATAACTTTTAT
TATCCTCATAACTTCCTTTGTAACTTTTTGTAAATTTAGCATTTAAAAAA
ACCCAAAAAATAAGAGCACAAATCTTAATCGAAAAAAAAATCATAACACT
GTCGTTTATTTTTTTTTTTTTGATTATTTTCCTCCTGTTTCGACTCATCA
AGTGAACTTACATTTAATTTTTGAAAGTTGATTTTGACCAGTTCTTAAAT
GAAACGTCCCTTTTCTAGGCTTAATGTCATTGATTGTCGTTGATTTTCAT
TGAAATTAAGCTATTTTCGCGAATGATTATGCATCCTTTAAAAAATTTTG
AACAGGGTAATTCGCAAATCTGTCCCAGCCAAAAAATCCTTTAAAACTTC
TAAAAAGGCACAAAATAGTCTTAAACAGTATTTCGGGACCCTAAAATGCC
TAAACTTTCACGGATTTTGCCCTCTTCGTAAAAAATTGATACAAATCGAT
GAAGCTTCGAAATCACAATAAACTGGTACCTGTTTTCAGCCCTCAAATTG
AAAAACAACAAATTTGAGTGAATTCAAAATGTGTGGAAGATGTTTAAACC
AACCTGCAAAGGGTCNTGAAAAACAACAAATTTGAGTGAATTCAAAATGT
GTGGAAGATGTTTAAACCATCCTGCAAAGGGTTATTTTTACTCTTTACGA
CTTTTGATATGGTATTCTAAATCTTACGAGAGGATCTAATTTTTTGTCCG
GTACTACCGGATGACCCACGAAAAAGTATAAGAGTTTGGAGGGAAAAATT
AAATTTTAACTAATTTCTTTTTTCATGGTAAAGAGGAAAGGCAAACTTAA
ATTTTAATGTATCATATTTTAATTTTGGAAAAGTAGTTATCGAGATATGG
AGGTATAAAGTCAAAAGTCATTATAAAACACAGTCAAAAAACAAATAAAA
AGAGACATCGAGTGAGAAGCATATTTTGATTTCTTTTGCCGGAAGGATTC
AGAAAAGAATAACAAAGGTTGACAATTCTTTTTTATGATATTCATTCATT
TGGAAAAATACGACCCCTAGCATTAATATAGCGACGAGCCCTAGAAGTAA
TTCCATCGAAAGCGCCTCTGATCATTTCCTGATCTGAGTTGTTACAAGCT
CTGACGATTGCTGCTTTCAACTGATTGATGGTTAGGCATTTTGAAAAAAA
TTCTTTATGCTACTTTTGGTACTTTTCATTTATTCCCAAAAGAACGATTT
GGGAATTGTCTAAAATTCGATAGACAAAGAAATAGCAAATGATCAAAGGA
AAGTTGTTTGTTCTGATACAAATTTGATACTGTCTTTTTTGACGTTTTTT
GACTGTTTTTTTATAATGACTTTTGACTTTATACCTCCATATCTCGATAA
CTACTTTTCCAAAATTAAAAAATTGATACATCAAAATTTTAAGTTTGCCT
TTCCTCTTTACCATGAAAAGAGAATTTTTTTCTGACACAGTCACCCTCCA
AACTCTTACATTTTTTCGTGGGTCACCCGGTAGGGTTGGCCAAGCTTGAC
GTTAATACTCTCAGATTTACGAAATGCGACCGAACTTTTCGACCTTGCGA
CAGTTTGTAATACCGCCTAAGTTAAAGTCATTGAAAATGCTTTTGAAGAG
GAGTGTAATTCGCGAGAAGTCTATGCTCGCCAAAAAATCTTTGTAATCTT
GTAAAACAATATTCTAACTTCAAAATCGTAAAGTTTCATTGCATTATTAG
CCTTTACAGTAAAGGCCTTTTTAAACTCAAAGAACAACCGTTTTTATCGG
ATTCGAGGATCGTTTGTCGCTTTTTACTATTATGTTTACGATTAAATTAA
TATTTTTGAATAATTGTTTCACAGTGATGATAATGATACAAGAATCCAAG
AATCAGTGTTGTCAAAATTGTGATAGCTACGCACTTCTTCACAAAGTTGA
TTTCTTTCTTCATTTTCGATTTTTTTTATATGTATTTTGTTTTTCTTTTC
AAGAAGACGAAAACCGAATCTTTTATATGATAGCATACGGCTTCTATCCA
TTTCTCGACAAAAATATGTTCCATCATTCGTCATATTTCTCACCTTTCTT
TCAGGCAATGGCACAGATCCAGATAACAGCAACAGTACAATCACCATGAA
CTCTTCGTCTTCCATCATCATGCCCTCTTCGTCTTCCATCAACGTGTCTT
CTACATTGTCCACAGAATCTGTCTCAATGAACGTCACCGTCTCCCCAAAT
GTTTCATCGTCGGCAACAATGAATGAAACATCGTCCGTCGTTTCGCCCTC
CTCTTCTTCATCCACCGTTGCCTCCTCCACTGTGGCTCCACCCACTACCA
CCACTACAACCAAAATGCCACCAAAGAAAGGAAGTGGGCGCCGCTTTGAT
ACCGGTTCGTTTATCGGTGGAATGTTTGTCATGATCTTCGTGATCGGATT
GGTTTATTTCATTCGCAAGTTATACAAGCGAAGAAACCCGAACTACTCCA
CACTCCACTAAACCGATTAACATTCTCGTCATTAAGTTTTTACTGATGAT
GACGACACATAAACACTTACACTATTTTTATGCATTGATCTTTGGAGGTA
TAATTTTCTTTTCTCAGCTTGTATAATTGTAATACTTTTAGAAATAGATA
ACTTTTTGTTTTTTAACCGCATCTTAGGTGTAGGACTTATTTGGTTATGT
TAAGTTTTTTTGTATGTTTTAAAATATTGTTTTGTATATTTTATGTTTGA
GGACTATGTATAATGCTAATCATTTTTATAGTGGATTTCATGACATTATA
GAATATACACGAAGCCAGATCGTATCTGTAGGAAATAATAAAAATGGTTT
TAAATAATTTGACTAACATCCGGTCAATATTCAACTTGTTTTTAAGCCTA
TTTTAGTTTTCAAGCCACAGTTTGGAGTTAATTGCATGGTTAATAAATTC
TCTTTTGTTCCGCTCACCTGAACGAGGTAATGGAGCCATGGCCTTTGTAT
TTTAGATTTCTTTGTTTGTTTGTAAGAGACTACGCTTAGGTTTTTGTAAT
TTCTTTCTTTTATTTTTAATTTGTGCACCCGCTTAATGGTATACATTTTT
TATTTATTTGTTTATTTTTGGTTTTTGATAAGATTCTGGTTTTTAGTTGC
AAAAGGTAATTAATGCATTCGTGTTAATGTCAAAAATTCGTTCTACGATT
TCCTGTTCGCCAAACGTTTAATATACTCACTTTGCATCAGCAAATTTTAT
TATTGCTAAAATTAACTATTTCGGTCAATAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00069432-exon-scaffold_5-1575043694:60922..61392 | TCONS_00069432-exon-scaffold_5-1575043694:60922..61392 | Clytia hemisphaerica | exon |
| TCONS_00069432-exon-scaffold_5-1575043694:56860..60335 | TCONS_00069432-exon-scaffold_5-1575043694:56860..60335 | Clytia hemisphaerica | exon |
| TCONS_00069432-exon-scaffold_5-1510915933:60922..61392 | TCONS_00069432-exon-scaffold_5-1510915933:60922..61392 | Clytia hemisphaerica | exon |
| TCONS_00069432-exon-scaffold_5-1510915933:56860..60335 | TCONS_00069432-exon-scaffold_5-1510915933:56860..60335 | Clytia hemisphaerica | exon |
| TCONS_00069432-exon-scaffold_5-1491911889:60922..61392 | TCONS_00069432-exon-scaffold_5-1491911889:60922..61392 | Clytia hemisphaerica | exon |
| TCONS_00069432-exon-scaffold_5-1491911889:56860..60335 | TCONS_00069432-exon-scaffold_5-1491911889:56860..60335 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:56860..61392 - |
Blast
BLAST of TCONS_00069432 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 2.604e-86 Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 3
Query: 246 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 671
MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 142 HSP 2 Score: 281.952 bits (720), Expect = 2.604e-86 Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 3
Query: 246 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 671
MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218 HSP 3 Score: 154.066 bits (388), Expect = 4.524e-41 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 3
Query: 246 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 476
MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229
The following BLAST results are available for this feature:
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