|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069462 ID=TCONS_00069462|Name=TCONS_00069462|organism=Clytia hemisphaerica|type=transcript|length=4965bpRun BLAST on NCBI transcript from alignment at scaffold_50:187957..198439- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069462 ID=TCONS_00069462|Name=TCONS_00069462|organism=Clytia hemisphaerica|type=transcript|length=10483bp|location=Sequence derived from alignment at scaffold_50:187957..198439- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00069462 vs. Swiss-Prot (Human)
Match: M3K1 (Mitogen-activated protein kinase kinase kinase 1 OS=Homo sapiens GN=MAP3K1 PE=1 SV=4) HSP 1 Score: 324.324 bits (830), Expect = 3.872e-90 Identity = 186/517 (35.98%), Postives = 272/517 (52.61%), Query Frame = 2
Query: 308 KRAQSP-IIDPQLEADMNRVKKQVPKVQKARLYLLQQPGPNSFLIGGDSPDHKYKVIVGPQTCTCGKDPFCIHILFVMLRVFKVKENDPLLWNRELKNFEVESLFRKYHKRLALLTKQKVRPSTLAVKDKISTSISPLPDPLXXXXXXXXXXXXVKEEEEVCPICLSDLVEGESMTLCKEGCQNRLHHHCMAVWAEECRRRKEALNCPLCRTIWQS-----------------------------------RRSSSPFKMTRSGTPTEQVDIQQDDHGLPRGEVIPEQYQEMAQSWVQVFGNDPVACLFSKDWKHRECGLRFISRKAVKVL-------------------------SEKRTTVSYRETKWELLSVCTAVLAYIVSDPVYNVYVAALRAFRAIVTNVRYQTQEELNTLHLTIKPVIEKILIKCSDSNRRVTILSMKILMEFVSGETA------SIQNPSNSTINNTQQHMDLIASC-LNQEEDQTQWQWWLGRLTFVRRLFDEHHSQL 1654
+RA SP P + NR +V KV +ARLYLLQQ GPNSFLIGGDSPD+KY+V +GPQ C+C + FCIH+LFVMLRVF+++ +DP+LW + LKNFEVESLF+KYH R + K PS ++ +S + + ++ + EEE++CPICL +++ ES+T+C++GC+N+LHHHCM++WAEECRR +E L CPLCR+ W+S R S F +T GT QQ IP Y+++A+ W+QVFG + V CLFS++W RE LR +S L +T++S +++ C +VL+ + +DPVY VYVAAL+ RA++ + E L ++PV++ IL+KC+D+N R + LS+ L+E G+ I + I +D + +C L + + WQ LGRL + RL E ++
Sbjct: 288 RRAPSPDGFSPYSPEETNR---RVNKVMRARLYLLQQIGPNSFLIGGDSPDNKYRVFIGPQNCSCARGTFCIHLLFVMLRVFQLEPSDPMLWRKTLKNFEVESLFQKYHSRRSSRIKA---PSRNTIQKFVSRMSNSHTLSSSSTSTSSSENSIKDEEEQMCPICLLGMLDEESLTVCEDGCRNKLHHHCMSIWAEECRRNREPLICPLCRSKWRSHDFYSHELSSPVDSPSSLRAAQQQTVQQQPLAGSRRNQESNFNLTHYGT-------QQ----------IPPAYKDLAEPWIQVFGMELVGCLFSRNWNVREMALRRLSHDVSGALLLANGESTGNSGGSSGSSPSGGATSGSSQTSIS-----GDVVEACCSVLSMVCADPVYKVYVAALKTLRAMLVYTPCHSLAERIKLQRLLQPVVDTILVKCADANSRTSQLSISTLLELCKGQAGELAVGREILKAGSIGIGG----VDYVLNCILGNQTESNNWQELLGRLCLIDRLLLEFPAEF 772 HSP 2 Score: 211.46 bits (537), Expect = 5.905e-55 Identity = 93/176 (52.84%), Postives = 133/176 (75.57%), Query Frame = 2
Query: 2420 KPRNVYLEEIHWKKGGLVGTGAFSSCYEAMDFKSGRIMAVKQISFVRNTEEEQEKVHQIVLEEIALLHRIKHPNIVSCLGATQHEAHYNLFMELMPGGSISSLLGKFGAFRESVTKSYTQQILQAVTYLHQHHTLHRDLKGANLLVDSTGQIVKLSDFGTAARLMAHGTGTKEFCG 2947
K + Y E+ W KG +G GAFSSCY+A D +G +MAVKQ+++VRNT EQE+V + + EEI ++ + HPNI+ LGAT +++YNLF+E M GGS++ LL K+GAF+ESV +YT+Q+L+ ++YLH++ +HRD+KGANLL+DSTGQ ++++DFG AARL + GTG EF G
Sbjct: 1232 KAKQPYREDTEWLKGQQIGLGAFSSCYQAQDVGTGTLMAVKQVTYVRNTSSEQEEVVEALREEIRMMSHLNHPNIIRMLGATCEKSNYNLFIEWMAGGSVAHLLSKYGAFKESVVINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLASKGTGAGEFQG 1407 HSP 3 Score: 179.489 bits (454), Expect = 4.911e-45 Identity = 84/129 (65.12%), Postives = 99/129 (76.74%), Query Frame = 1
Query: 2932 QRI-LWXFGTAARLMAHGTGTKEFCGQLLGTIPFMSPEVLRGEHYGRKCDVWSIGCCIIEMASGYPPWGSQHVDNHLALMFKIASSTTGPHIPSSLGPGMRDLTLRCLELKEANRPSSSELLQHAVFRT 3315
QR+ + FG AARL + GTG EF GQLLGTI FM+PEVLRG+ YGR CDVWS+GC IIEMA PPW ++ NHLAL+FKIAS+TT P IPS L PG+RD+ LRCLEL+ +RP S ELL+H VFRT
Sbjct: 1382 QRLRIADFGAAARLASKGTGAGEFQGQLLGTIAFMAPEVLRGQQYGRSCDVWSVGCAIIEMACAKPPWNAEKHSNHLALIFKIASATTAPSIPSHLSPGLRDVALRCLELQPQDRPPSRELLKHPVFRT 1510 The following BLAST results are available for this feature:
BLAST of TCONS_00069462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.