TCONS_00069471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069471
Unique NameTCONS_00069471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069471 ID=TCONS_00069471|Name=TCONS_00069471|organism=Clytia hemisphaerica|type=transcript|length=718bp
GTTGGTGTTTTATTAGAAAAATGGCTTGAATgaataatatttttgttatt
ttaaattgcaaattgatatttttcttttctgtttcaGGTTTAGATTATTA
AACCAAGATTTATATATTGTGATTCAACCGTTTCTTGCAAATTATCAACA
TCATTTCTGTAGATGTATATATGGTTTTTAAGAACGATGAAGTGGTATAA
ATAacattcttgattttttttcgagtGGTTTTGGTGCCCTCGGTGGAACA
AAATTGCGAGATCCTCGGTGAGATCAATCAGATCAATGACAATATAACCA
GTTTAGCACGGAGCGCTATGCACTAATCTCTAGATACTGTATGTGATATA
AAGCGAGATGTAACGTTGACTCATTCGATAAAAACTGAATGGAAAATTAA
AAGCTGAAAACATGGAAaccctgaaaacaaaaaactgatttCCTATATGG
TTGTTTTTACATTGaatcataacttttttttatgaatttgatttaGTGCG
TtcatttttgtttaaatttatATTTGTAGAACGGACTCGCTTCACTAATG
TAATAAATGTAATAAGCTTCATAGATTCACCCAAACAAAAATCTAAAAGC
AAACTATCGACGTCTCACAAGACGTCATTTTCTCTCattatcactaaaaa
agggaagaaTTCAGGAGGCGGggtaaatttgaaaacggagTTTAGTTCGG
GGTGGAATAACAGTGGCG
Run BLAST on NCBI

transcript from alignment at scaffold_50:34928..35645

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069471 ID=TCONS_00069471|Name=TCONS_00069471|organism=Clytia hemisphaerica|type=transcript|length=718bp|location=Sequence derived from alignment at scaffold_50:34928..35645 (Clytia hemisphaerica)
CGCCACTGTTATTCCACCCCGAACTAAActccgttttcaaatttaccCCG
CCTCCTGAAttcttcccttttttagtgataatGAGAGAAAATGACGTCTT
GTGAGACGTCGATAGTTTGCTTTTAGATTTTTGTTTGGGTGAATCTATGA
AGCTTATTACATTTATTACATTAGTGAAGCGAGTCCGTTCTACAAATata
aatttaaacaaaaatgaACGCACtaaatcaaattcataaaaaaaagttat
gattCAATGTAAAAACAACCATATAGGaaatcagttttttgttttcaggg
tTTCCATGTTTTCAGCTTTTAATTTTCCATTCAGTTTTTATCGAATGAGT
CAACGTTACATCTCGCTTTATATCACATACAGTATCTAGAGATTAGTGCA
TAGCGCTCCGTGCTAAACTGGTTATATTGTCATTGATCTGATTGATCTCA
CCGAGGATCTCGCAATTTTGTTCCACCGAGGGCACCAAAACCactcgaaa
aaaaatcaagaatgtTATTTATACCACTTCATCGTTCTTAAAAACCATAT
ATACATCTACAGAAATGATGTTGATAATTTGCAAGAAACGGTTGAATCAC
AATATATAAATCTTGGTTTAATAATCTAAACCtgaaacagaaaagaaaaa
tatcaatttgcaatttaaaataacaaaaatattattcATTCAAGCCATTT
TTCTAATAAAACACCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043296XLOC_043296Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069471-exon-scaffold_50-1491911889:34928..35645TCONS_00069471-exon-scaffold_50-1491911889:34928..35645Clytia hemisphaericaexon
TCONS_00069471-exon-scaffold_50-1510915933:34928..35645TCONS_00069471-exon-scaffold_50-1510915933:34928..35645Clytia hemisphaericaexon
TCONS_00069471-exon-scaffold_50-1575043694:34928..35645TCONS_00069471-exon-scaffold_50-1575043694:34928..35645Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:34928..35645 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0697009	0.135939	0.0789189	0	0.84596	0.742765	3.31562	2.85237	2.58437	2.61913	1.83602	2.55312	0.834405	0.625833	0.474941	0.849475	1.98832	1.60892	1.48187	1.55067	1.4826	0.986125	0.559424	0.43594	0.374174	0.467518	0.669016	0.407995	0	0.394101
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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