TCONS_00069473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069473
Unique NameTCONS_00069473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069473 ID=TCONS_00069473|Name=TCONS_00069473|organism=Clytia hemisphaerica|type=transcript|length=819bp
TGGGTAAATTCATTGTCTTTTTTACCTTGTTCTAAAAATGGTTACAATAA
AAAAAGCGGTTACctacaagaaagaaaaacggATGGAAAAGCTATAAAAA
GCCTcgtttttatgtaaaaatactGGAAAAATAAAACGTAGAAATAGTAC
TAGGAAAATGTTCTAAGTATGTAACCAGTAGCAACATGTGTTAAATTATG
TATGCCATTGATGTTGTTATCAGAATGAACTTTCGACTTGACTGAATACT
TCAATGGTAAATATCTCATTCATATTTTGATGCGCTCATCATAAACATTT
TGCAACTaatcataataataataatgtgtAATGTTCATCACAAAATCATC
CCGCTCAAttctcatcttcattttcttctgttTAATTTCATGTTCTCCAA
ATGATTAAGCTTTCAATTCGATCAAAGTCAATTCAATTTGTTTGTAGATG
CCAATCAATCAATGTAGATCTGTCAATGATTCGTTGATTTGCTCATCGTC
GAAGAACTTCAATCGTTGTgttgctgatttttttcatgattattcatttc
tttcaaatcaaaaCCAAACATCTCTCTTCATTTTTTGGTGCTGACGACCA
AAGGTTTGGTTTTCCACTGCAACGATTTGTTGGCTGCATTGTTACTTTGT
TTGGAGGTGGTGGTGGAGGAGGAGTTGGTCTTGGTCATCATGCTCATCTT
GTTATTGCTGTTGTTTCCAGTGTTCAAGAAAGTATTGGCGTTGGTGGAAT
TCTTGAAAAACATCATTATTTCTTGTAACGTgtgttttttcttgtgttgc
TTCTTCTCGCTTCTTTGCT
Run BLAST on NCBI

transcript from alignment at scaffold_50:157918..158736

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069473 ID=TCONS_00069473|Name=TCONS_00069473|organism=Clytia hemisphaerica|type=transcript|length=819bp|location=Sequence derived from alignment at scaffold_50:157918..158736 (Clytia hemisphaerica)
AGCAAAGAAGCGAGAAGAAgcaacacaagaaaaaacacACGTTACAAGAA
ATAATGATGTTTTTCAAGAATTCCACCAACGCCAATACTTTCTTGAACAC
TGGAAACAACAGCAATAACAAGATGAGCATGATGACCAAGACCAACTCCT
CCTCCACCACCACCTCCAAACAAAGTAACAATGCAGCCAACAAATCGTTG
CAGTGGAAAACCAAACCTTTGGTCGTCAGCACCAAAAAATGAAGAGAGAT
GTTTGGttttgatttgaaagaaatgaataatcatgaaaaaaatcagcaac
ACAACGATTGAAGTTCTTCGACGATGAGCAAATCAACGAATCATTGACAG
ATCTACATTGATTGATTGGCATCTACAAACAAATTGAATTGACTTTGATC
GAATTGAAAGCTTAATCATTTGGAGAACATGAAATTAaacagaagaaaat
gaagatgagaaTTGAGCGGGATGATTTTGTGATGAACATTacacattatt
attattatgattAGTTGCAAAATGTTTATGATGAGCGCATCAAAATATGA
ATGAGATATTTACCATTGAAGTATTCAGTCAAGTCGAAAGTTCATTCTGA
TAACAACATCAATGGCATACATAATTTAACACATGTTGCTACTGGTTACA
TACTTAGAACATTTTCCTAGTACTATTTCTACGTTTTATTTTTCCagtat
ttttacataaaaacgAGGCTTTTTATAGCTTTTCCATccgtttttctttc
ttgtagGTAACCGCTTTTTTTATTGTAACCATTTTTAGAACAAGGTAAAA
AAGACAATGAATTTACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043298XLOC_043298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069473-exon-scaffold_50-1491911889:157918..158736TCONS_00069473-exon-scaffold_50-1491911889:157918..158736Clytia hemisphaericaexon
TCONS_00069473-exon-scaffold_50-1510915933:157918..158736TCONS_00069473-exon-scaffold_50-1510915933:157918..158736Clytia hemisphaericaexon
TCONS_00069473-exon-scaffold_50-1575043694:157918..158736TCONS_00069473-exon-scaffold_50-1575043694:157918..158736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:157918..158736 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.232641	0.226862	1.97556	0.708685	66.589	48.8389	86.3642	83.1632	160.264	157.961	137.823	359.726	223.38	114.605	93.2304	135.492	139.365	134.879	201.613	202.11	221.107	297.378	30.5419	29.1614	43.7733	42.7448	898.535	643.946	774.704	680.321
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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