TCONS_00069497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069497
Unique NameTCONS_00069497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length815

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069497 ID=TCONS_00069497|Name=TCONS_00069497|organism=Clytia hemisphaerica|type=transcript|length=815bp
GCAATGGAGAACCATGTTGAGTCTTTCATCTCTTACCATAACCACGGTCA
GAGATAAGCAAGTACTTCCCATAAAACACGGTCAGTATTATATGCATGAA
AGATGAACAATTAATTTGACTTTCCTCTTAACtaatatatttaaatattt
tgactaaAGTTCATCATTTGTCTTTAAACTTCTGATAAAAGAGAATCATG
TTGAACCTTTCATCTCTTACCATAACCACGGTCAGAGATAAGCAAGTACT
TCCCATAAAACACGGTCAGTATTGTTTGCAAGAAAggatattttccaaat
ttaagaAGTGGAAAAAATGAAGTATTTCATTTCCCTTCCCCCAAATACAA
ATAAAGACCCAAGCTGGCCTGTGCACCTCATTAGAACAGAGACtgatttt
tttaggcttttctTATAGCTACATTTGACATTagcttttaaaacaaaaac
aaacagacaGATCTGTGAAAAACTCTTCATGACTGAAAGCATCTCAAAGC
AAAAAACCTCAGAACAATAAAagcaaaagaaataaaaacatataCTTGCC
TTTTAAATTTGTTGCTTGTCAAGATTATTTATCATGGGTTCCTTCCAAGA
TGGCGACTGAATCTTTTCCCTCGTGTTTTGACTTTCGGTTTTCCAATGTT
TGCAAGTGGCGGATAATAATGGGCGGGAATTTTTACAtttattgtttgaa
aattttggtcaaaaaagcTTGCAACTTACTTCCTAGATTCAAAGTATTGT
TGATTAAGATATTCAGtaagttttaaaaatgtttttaaagaaattttgct
tttgaaatctttttg
Run BLAST on NCBI

transcript from alignment at scaffold_500:134319..135133

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069497 ID=TCONS_00069497|Name=TCONS_00069497|organism=Clytia hemisphaerica|type=transcript|length=815bp|location=Sequence derived from alignment at scaffold_500:134319..135133 (Clytia hemisphaerica)
caaaaagatttcaaaagcaaaatttctttaaaaacatttttaaaacttaC
TGAATATCTTAATCAACAATACTTTGAATCTAGGAAGTAAGTTGCAAgct
tttttgaccaaaattttcaaacaataaaTGTAAAAATTCCCGCCCATTAT
TATCCGCCACTTGCAAACATTGGAAAACCGAAAGTCAAAACACGAGGGAA
AAGATTCAGTCGCCATCTTGGAAGGAACCCATGATAAATAATCTTGACAA
GCAACAAATTTAAAAGGCAAGtatatgtttttatttcttttgctTTTATT
GTTCTGAGGTTTTTTGCTTTGAGATGCTTTCAGTCATGAAGAGTTTTTCA
CAGATCtgtctgtttgtttttgttttaaaagctAATGTCAAATGTAGCTA
TAagaaaagcctaaaaaaatcaGTCTCTGTTCTAATGAGGTGCACAGGCC
AGCTTGGGTCTTTATTTGTATTTGGGGGAAGGGAAATGAAATACTTCATT
TTTTCCACTtcttaaatttggaaaatatccTTTCTTGCAAACAATACTGA
CCGTGTTTTATGGGAAGTACTTGCTTATCTCTGACCGTGGTTATGGTAAG
AGATGAAAGGTTCAACATGATTCTCTTTTATCAGAAGTTTAAAGACAAAT
GATGAACTttagtcaaaatatttaaatatattaGTTAAGAGGAAAGTCAA
ATTAATTGTTCATCTTTCATGCATATAATACTGACCGTGTTTTATGGGAA
GTACTTGCTTATCTCTGACCGTGGTTATGGTAAGAGATGAAAGACTCAAC
ATGGTTCTCCATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043319XLOC_043319Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069497-exon-scaffold_500-1491911889:134319..135133TCONS_00069497-exon-scaffold_500-1491911889:134319..135133Clytia hemisphaericaexon
TCONS_00069497-exon-scaffold_500-1510915933:134319..135133TCONS_00069497-exon-scaffold_500-1510915933:134319..135133Clytia hemisphaericaexon
TCONS_00069497-exon-scaffold_500-1575043694:134319..135133TCONS_00069497-exon-scaffold_500-1575043694:134319..135133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_500supercontigscaffold_500:134319..135133 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.344588	1.5671	0.230431	0.318398	2.5702	2.6833	2.30735	2.15867	1.69385	0.57715	1.80576	1.27576	0.75075	1.46393	1.10291	1.34756	1.07927	1.21177	1.11317	1.27618	2.08856	1.12807	1.36287	1.21769	0.395334	0.687584	0.787982	0	0.585415	1.22616
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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