TCONS_00069504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069504
Unique NameTCONS_00069504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069504 ID=TCONS_00069504|Name=TCONS_00069504|organism=Clytia hemisphaerica|type=transcript|length=723bp
ATTCTTATAAATTCAGTCGTTTCAGTCATAATTGTCAGGGGTTAAAATAT
TACAAATAATATATTGTAATATACAGCTTGGTGACACTAGGCAGGAGGGG
AGAGGGGGAGGTTCCTGCAAAGTCATTGTCACAAGCCAGCAATAAAACTC
GAACTCGCATTGAATTCTTCGACAGTTTATAttgcgaattttttttcttc
ttctttcttcttgtcTTCTTCTTCAGTCAAATGTCTTCGTCGTTTTCGTC
AAAGTTGTTGAACCAGGATCGCAATAAATACTGCATTGATCCCAAATGTT
CATGATGATGATGTGTGATGATGTCCACCTTTAGAAATTCCCGTGTGGTA
AAAAGTGGAGTTGTCGATCAGTCTTTTTGTCGTCACATTCGGCTCACTTT
TGGCAGAGTCGCCAAGCTCTGAGAAACAATTTATTTCGTGCTACCAAAcg
ttttggggggggggggggtggctTGCTACTGGCGGAGTCGCCAACCTCTG
AGAATCGATTAAATTCTTGCTACCAAaatttgttgttgctgttgaaaTGT
TGCTGCTGTTGTTGTGGCTCACAAATGGCAGAGGCGCCACTCTCTGTGGA
ACTAAACAAAGTGTATTCCATGCTACCAaagtgttttgttttgttgttga
tcTGTACTTTCTGTTGTTTTTGGCTGGCAATGGGCAGGGACGCCATCCCC
TGAGACCTAATATAGAGGTCTTG
Run BLAST on NCBI

transcript from alignment at scaffold_501:13594..14316

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069504 ID=TCONS_00069504|Name=TCONS_00069504|organism=Clytia hemisphaerica|type=transcript|length=723bp|location=Sequence derived from alignment at scaffold_501:13594..14316 (Clytia hemisphaerica)
CAAGACCTCTATATTAGGTCTCAGGGGATGGCGTCCCTGCCCATTGCCAG
CCAAAAACAACAGAAAGTACAgatcaacaacaaaacaaaacacttTGGTA
GCATGGAATACACTTTGTTTAGTTCCACAGAGAGTGGCGCCTCTGCCATT
TGTGAGCCACAACAACAGCAGCAACAtttcaacagcaacaacaaattTTG
GTAGCAAGAATTTAATCGATTCTCAGAGGTTGGCGACTCCGCCAGTAGCA
agccaccccccccccccccaaaacgTTTGGTAGCACGAAATAAATTGTTT
CTCAGAGCTTGGCGACTCTGCCAAAAGTGAGCCGAATGTGACGACAAAAA
GACTGATCGACAACTCCACTTTTTACCACACGGGAATTTCTAAAGGTGGA
CATCATCACACATCATCATCATGAACATTTGGGATCAATGCAGTATTTAT
TGCGATCCTGGTTCAACAACTTTGACGAAAACGACGAAGACATTTGACTG
AAGAAGAAgacaagaagaaagaagaagaaaaaaaattcgcaaTATAAACT
GTCGAAGAATTCAATGCGAGTTCGAGTTTTATTGCTGGCTTGTGACAATG
ACTTTGCAGGAACCTCCCCCTCTCCCCTCCTGCCTAGTGTCACCAAGCTG
TATATTACAATATATTATTTGTAATATTTTAACCCCTGACAATTATGACT
GAAACGACTGAATTTATAAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043322XLOC_043322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069504-exon-scaffold_501-1491911889:13594..14316TCONS_00069504-exon-scaffold_501-1491911889:13594..14316Clytia hemisphaericaexon
TCONS_00069504-exon-scaffold_501-1510915933:13594..14316TCONS_00069504-exon-scaffold_501-1510915933:13594..14316Clytia hemisphaericaexon
TCONS_00069504-exon-scaffold_501-1575043694:13594..14316TCONS_00069504-exon-scaffold_501-1575043694:13594..14316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_501supercontigscaffold_501:13594..14316 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
270.432	269.569	246.098	272.958	259.324	215.881	291.244	316.856	380.278	321.684	312.794	435.601	336.345	320.742	238.453	232.006	312.187	362.946	192.017	198.091	308.984	304.483	260.925	267.798	379.13	363.696	219.479	212.518	163.179	152.438
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top