TCONS_00069519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069519
Unique NameTCONS_00069519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069519 ID=TCONS_00069519|Name=TCONS_00069519|organism=Clytia hemisphaerica|type=transcript|length=1359bp
GACGGAGGATTAGAGATACCGAACCGTGTCTTCTTGGGAGGAATTCCAAG
CGAGACTACAGAATTAGAATTGGAAACGTTCTTTTGCGACTATGGGCTCG
TCAAAGATGTGAGAATTGTAACGGATCGAATTACTGGAGACTCGAAAGGT
TATGGGTTTGTGACATTTGACGAGAATGAGGATATCAGCAACcttctttc
caacgataccattatgatgaaaggaaagaaaatgcGCGTTCGAAAAGCTG
TTCGAAGAAATTCTTCTCAATTTGTAAACAATGATGGCAAAAGCTCGCCT
GAAAGCGCTTCTTCAGGATCATCTTCCAGCAACAAGAGTAGTGGTGGTGG
GAAAAGTTGGTCTGATTCAGCTGTTTTATTCCAACCAAGTCGTCCGTCTG
ATGAATTGCTGATGAAGAATTCTCCTAACGAACCTGTTTTATTGTTTCCT
GGAAATGTGTATTATGGTGGAAGTCCTTACGTGTCTCGTCAACCCTCCAT
GGCCCAACAAGGAGGATACTACACTCCCACAATAACCGGACCTACACAAC
CCACCTCTCAAATGATGACACCTGTCACTCAAGCCCCTGCCACGCCAGCT
TACATCAATCAGCCTATGAACGCTGGCTATCCTTCCCAACTTATGTATCA
GAATCATTCAGCTCCTAGCAATTATCCTCCAACTGGTGGTTATCTCGTTC
CAGTCAATACATTTTACCCAACCTACCCAGGGTACCCCATGTATTAAAGA
ATGTCACACTATTTGTAATTTACCAAATGCTCAATGTGTAGCCAAGAACA
GCTAATGTCTCCGTGAAGTTATGTTTCCGTCAAGTTTTTTTTGAACaata
aaacagaaaattattttatagattTAGAGTATATGAAAGATTTTATAAAT
GTGATTTTAACTGCTCGTCATTTTTAGATGCAGTCAAAGTGATACTATAC
TTTCTATTGTACTTTTTACATTTAGTATTTATATGGATTTTACAGAGAAG
GATTTCTAATGGGGCTTATTTTCTCATCTACCTCACCCTAAAGTTGACTG
TATAATTACTGCAGTAACACAATCGAGCTTGGATTTTTTGTGAGTGGAAA
CTTCAATtcctaaaatttaaatttgaatgaGATTCTATTCGGCCCCCGTA
AGGGAACCTTTACTTTGTAATTTAAATCTTTATATCATGGAtgttttata
tcaaaattttacATAGAAATTTTAATCTTTAGTAGACATTATAATTCGTG
TTATATTTCTAGTACATTATTTCCAAATATTATATGATAACGTGTATATG
TATTTAATTAGAATTCCTTGAGAGGAATCATCACCTTAAACTTTCGCGTC
ACTTTCTTC
Run BLAST on NCBI

transcript from alignment at scaffold_502:13472..16976+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069519 ID=TCONS_00069519|Name=TCONS_00069519|organism=Clytia hemisphaerica|type=transcript|length=3505bp|location=Sequence derived from alignment at scaffold_502:13472..16976+ (Clytia hemisphaerica)
GACGGAGGATTAGAGATACCGAACCGTGTCTTCTTGGGAGGAATTCCAAG
CGAGgtaaaatttactcatttttcggAGGAATTTAGTGcgttaaaaaaga
atttttttggcaagttaatttaaagaactttttatcttttcagtttttgc
tAAAATATAGTGACTTTCGTTTTAGACTACAGAATTAGAATTGGAAACGT
TCTTTTGCGACTATGGGCTCGTCAAAGATGTGAGAATTGTAACGGATCGA
ATTACTGGAGACTCGAAAGGGTAatatttcactttcattttataattgat
ttcatttttgaaaaacccCTCCCAGCACCCTAGGGGTTTAGTATAGTATT
TCGTGATCTTATTTATgggaaaacaatagaaaattcaaacatatttttca
tTCTAACAATAGCGctgtttcaaattttgacctttCTGTCTTTCATGGAA
CAATAAAGACTTCAAACAAATTTCTTTCCAAACAAAGCGTTGTTCCAAAA
GATCTGCTTgcgttgtttgttttgatttttttctgtttttcttccgTCGC
CATTCGGGACGAAATGTTGCACTGACAGTCTGTGAATTAAACTGAGTGac
gtttttgaaacattttttgtgCGCTCCTTCGCTTAGGCGCtttgcaaaaa
cgaaagtgaaagatTTTGTTTCGAAAATTAATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNgcaaaaacgggtttgtttacctccagagaccaaacggtggaga
gcatcaaaataatgcgcgcgcattagttttacgaattacgggaaaggtgt
attcaggcgctttgaaaatgcaaaaaaatttataagatacaatattttta
acttttatcttCTGCCCAATCCATTATTTTAGTAATATTTAGTTATTTTC
CTCTGTAATTTCGGTTTCCCTCTGAAAAATTTTACATATCAGAGAATCTT
AAATTTATCTGCTTTGATTTTGGTTATTGCTACAAACGCTTCGAAAAACT
CATTGACTCGCTTATTTGCTATGCTCCAGTTTTAAATATGTATCAAATTA
ATTTTAGTTATGGGTTTGTGACATTTGACGAGAATGAGGATATCAGCAAC
cttctttccaacgataccattatgatgaaaggaaagaaaatgcGCGTTCG
AAAAGCTGTTCGAAGAAATTCTTCTCAATTTGTAAACAATGATGGCAAAA
GCTCGCCTGAAAGCGCTTCTTCAGGTCAGTATATCTCCTAATGTCTCATG
AGTCATAATTTTCTGCTGTTCAAAAATAAGATTCAGCTGGATAACGTCTA
GATTATTAGTCTAGTCCACATTCAGTTTCTGCAAACCAGACACTTGCTAG
ACTTTTGCTCATCCTCTGGTAAAAGGTTTCTATACAGGAAGTATATACTC
ATAGGAGGTCTACAATTTAAACTAGACACTTTGCAGTCTGTATCATGTCG
AAAtgttaaaatgaaaaatctttgaatctttcggggttttttttttgaca
aaaagatgaaagaaaccgaatttgtttacttttctttctaaagtgaagaa
aaaatattcaagatttCGAGACATCTTTTGCGtaaacttttttaactttt
tgatcaATTATTCAGGATCATCTTCCAGCAACAAGAGTAGTGGTGGTGGG
AAAAGTTGGTCTGATTCAGCTGTTTTATTCCAACCAAGTCGTCCGTCTGA
TGAATTGCTGATGAAGAATTCTCCTAACGAACCTGTTTTATTGTTTCCTG
GAAATGTGTATTATGGTGGAAGTCCTTACGTGAGTGAACTTTTTTTACAT
ATTCAAGACCTTTTGCTCTAGGGTTCACAAGAGGTTTGACTCTCCTCAGT
GGTTGGATATAATCAGTTTAAAAAAACTCGTGTACTTTCCCTCAGAAACT
GAACATCGTCTTTTTCTAAGgaatcttgaaaatttcaaacggCTGCAAGA
AAACCTGAAAAGCTTTCCTAGTTAAGAACCTCAAAACCTCTAAACCTAAC
ACACCATTAAAATACTTCTTActtaaaatcattttctaaaATAGCTTGCG
TCTAAACAACTCGTCTTTCTCTCTAGGTGTCTCGTCAACCCTCCATGGCC
CAACAAGGAGGATACTACACTCCCACAATAACCGGACCTACACAACCCAC
CTCTCAAATGATGACACCTGTCACTCAAGCCCCTGCCACGCCAGCTTACA
TCAATCAGCCTATGAACGCTGGCTATCCTTCCCAACTTATGTATCAGAAT
CATTCAGCTCCTAGCAATTATCCTCCAACTGGTGGTTATCTCGTTCCAGT
CAATACATTTTACCCAACCTACCCAGGGTACCCCATGTATTAAAGAATGT
CACACTATTTGTAATTTACCAAATGCTCAATGTGTAGCCAAGAACAGCTA
ATGTCTCCGTGAAGTTATGTTTCCGTCAAGTTTTTTTTGAACaataaaac
agaaaattattttatagattTAGAGTATATGAAAGATTTTATAAATGTGA
TTTTAACTGCTCGTCATTTTTAGATGCAGTCAAAGTGATACTATACTTTC
TATTGTACTTTTTACATTTAGTATTTATATGGATTTTACAGAGAAGGATT
TCTAATGGGGCTTATTTTCTCATCTACCTCACCCTAAAGTTGACTGTATA
ATTACTGCAGTAACACAATCGAGCTTGGATTTTTTGTGAGTGGAAACTTC
AATtcctaaaatttaaatttgaatgaGATTCTATTCGGCCCCCGTAAGGG
AACCTTTACTTTGTAATTTAAATCTTTATATCATGGAtgttttatatcaa
aattttacATAGAAATTTTAATCTTTAGTAGACATTATAATTCGTGTTAT
ATTTCTAGTACATTATTTCCAAATATTATATGATAACGTGTATATGTATT
TAATTAGAATTCCTTGAGAGGAATCATCACCTTAAACTTTCGCGTCACTT
TCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043332XLOC_043332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069519-exon-scaffold_502-1491911889:13472..13525TCONS_00069519-exon-scaffold_502-1491911889:13472..13525Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1510915933:13472..13525TCONS_00069519-exon-scaffold_502-1510915933:13472..13525Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1575043694:13472..13525TCONS_00069519-exon-scaffold_502-1575043694:13472..13525Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1491911889:13647..13741TCONS_00069519-exon-scaffold_502-1491911889:13647..13741Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1510915933:13647..13741TCONS_00069519-exon-scaffold_502-1510915933:13647..13741Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1575043694:13647..13741TCONS_00069519-exon-scaffold_502-1575043694:13647..13741Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1491911889:15079..15245TCONS_00069519-exon-scaffold_502-1491911889:15079..15245Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1510915933:15079..15245TCONS_00069519-exon-scaffold_502-1510915933:15079..15245Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1575043694:15079..15245TCONS_00069519-exon-scaffold_502-1575043694:15079..15245Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1491911889:15637..15800TCONS_00069519-exon-scaffold_502-1491911889:15637..15800Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1510915933:15637..15800TCONS_00069519-exon-scaffold_502-1510915933:15637..15800Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1575043694:15637..15800TCONS_00069519-exon-scaffold_502-1575043694:15637..15800Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1491911889:16098..16976TCONS_00069519-exon-scaffold_502-1491911889:16098..16976Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1510915933:16098..16976TCONS_00069519-exon-scaffold_502-1510915933:16098..16976Clytia hemisphaericaexon
TCONS_00069519-exon-scaffold_502-1575043694:16098..16976TCONS_00069519-exon-scaffold_502-1575043694:16098..16976Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_502supercontigscaffold_502:13472..16976 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	166.485	131.846	0	0	0	0	164.337	210.286
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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