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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069521 ID=TCONS_00069521|Name=TCONS_00069521|organism=Clytia hemisphaerica|type=transcript|length=3534bp
CGTATATTGGAAGGGGTTTTAGGCTCAAAATCGAGTTTTGATCAAAATGG
TTGTGATTTGTCTTCACACAAATAAcgataataacaataatatagAGGAG
GAAAAATTCAACTTTAAAGACGCTTTCAGCAAATTCAATAATGTCAATGC
TAATAATAATTTGCACACTCCTAAGAGTTACAATGCAGCCAAAAATTTCA
GTCCAGTCAAAAGTTTAACAACTGCCACAAGTGGCAATGCTGCGAACATT
CGAAAAGACTTGGAATTTCTACATAAGAAGAAAGTTACATTGGACAAGCC
AACTCACGATAAACCGATAActgtttcttcttcttcacaAGCGACATCGA
CGTATTCGCCTCCCGTCAAACTAGGAGACATCAAGCCGACAACCCCACAA
ATTGAAAATACCGTTGCTAAGGACCGTATCCGTGTCGCGCCACAAAACCG
TCGGAAACCATCCCGATATCGCACCGGAAACGCTCCACCGAAACCCGCTC
GCTCCACGAGTTCGTTTTCCTTTAAGGAAGACTCGTTTTTAACGAAAATC
GATGAAGATTCCGATAATTTCGAAAGTCGTCAAACTACGAATGTCAGCCG
ACATACATCAAACGTCAGCCGGAACTCTGACTGGGATTCAATGCCCTCCT
ATTCACGAAGTAACTCGGAAATGACAAATCGATCTTCGTTTGATAATACT
GAACCGAATTTCAACGATGCTGTCCCCAAAGCATTACGAAATAAACATTC
GTTCTCGACAGCCGACGATTTTCAACCTCAAAAGCAGAGAACCATGGCCC
AGCGATCTTTTTCGACCAATTCTCGAGAGAATGTCAACCGCCCTAAACCA
CCTATTAAACCGCCCCGAAGCGCCAATTCATCCATACAAAGCTTAGACGA
CAATGAAGATCTTCCGGTGAAGAAATTCTCGTTGGGTGAATtgaaaagta
aattattttattCCGAATCTTTCGGAAAGAACGACGACGAGAAACGACTC
TCAAGAGATCAAGTTTTCGGTAGTCGGGCTTCAATTGATGAGAAGGAGAA
ATCAGCTCCCGAAAAACGACAATCTTACGGTTATGAAAGAGAATCACCCG
GTGACAATCAAACCTCATCCCCCGAAAAGCGACAATCTTTCGGAGATAAG
CGAGAATCGTTCGGAGAGAAACGACAATCATTTGGAGAGAAACGACAATC
TTTCGGAGAGAAACGATTATCTTCGGTCGATACAACACCTGTCGAAGAAA
AACGCCTTTCAAAAGTTTCGTACGGAAGCCGAAACTCCTTGACgggaaaa
tcttttgaaattgatgaaaaacgaAACTCAGGCTCGGTGACAATACAGTC
TTATTCTGTTCCTGGTTTATCTCGAAGTCGCACTTCTTTGAACAGGGAGT
CACCAGAAAAGAAGCCATCGCCTGAAACCACTACAATAAAAAACCAAGAG
GGTTTTTATCGAAGCAAAGAAGATATTTCACAGCAGCGTAAAAGTGTTCA
TGAAGAGAAAGAACTTGTTTTCCCCAAATCCCAAGAGGGAGATTCTTATG
GTATGTTGGCAATGGCGTTGACCAGCCCACGACAAGATCGAAAGATCGAA
TCCAGCCCTCCCTTATCGAACATCTCTCGATCAAAATCTTATTCTGAGAA
ACTAGAAAACCGAGAGAATAGTTCATATTCTAGTACTAATTCAAAGAGTG
TTGGCTATATTAACCAAACAGGCGCTAAATCACCACCGGTCGTTCGTCAG
AGGCCAGCTACAAGTCCTCGGAAGCTTCACCGTCCAGATAAAGAGGAAGA
GGAAAAACCGTTTGAGTTCAAGCGTATTTCGTTGAAAAGTGTTCCAAAAG
CTGAGGACTATATGGACAGCAAGGAAAGTGTCGAGAAGGCGAACGAATCT
CATAACACTGCAACGACCTCATCGAACgatattttagattttgttaATAG
TGAAATGAACCTTGACGAACCCGTTACCAATCAACCGAAATCGTTCTCTC
GTACACCGAACGCGAGTACGTCCTCTTATCAAAAGGTTTCGAGCCCCGTC
CGTAAGTCTGAAGACATTGAAACAAACTGTATGGCGTTTGACAGCGCCAA
ATTATCGAGCATCGATTTGAATACGAGTTCCTTTAACGAGAAATCTTTCG
AAGAAAAGCCACGACACGACGTAAAACGAGCTTCTTGGAAAACTATCGAT
GAAAAACCGAAAGTTGTCGAAAGTCTTGAATTCAAACggcattctttaaa
gaaaatcgaCCGAAATTCCTTCGAACAACACGCCCCTGTTGAAGACTCTG
CCGGATCACCCttagaaatgaaaagacattcgTTAAAGAAAGTTGATCCA
CCCTCTTTAGCAGGGGAAGCCAAATCGTTTTCTCTACCTTCAAATCGAGA
CGTCAAACCAGAAGTGGAAGAACAGATGGACCGCCCGCCCCGCCCATTAG
CTAAAAACCGCCCTACAGTTCATGGGTCACCAAGTAAAGACTTTTCGTTT
CAAAGTAGTGATGTTATTCAGCGTTCGAAATCGTTGGGAAGTAAAGAACA
GAAGAGGTTGGGAGACGCCGCTTCTTCGAAAGAAAACCTCGCATCATCTC
CTAGCAACGCTGAACCTGAATGGTTCCGATTGGCTCGACAAAAACAAGAG
AccgacaaagacaaaaacaATGGTTCGACGAATGAGGCAAACAGCAGACC
TTTATCACCACCGACcaaaccaaaaccaaaaatcAGTCCACGTCCACCCA
TTGGTCAAAAGCCAGAAGTCAGTCCCAGACCTCCGATCGTTGCTAAGAAA
CCGGTACAAACAACAGTTTCACCGACTCGTTCCGGTTCTCGTGTACAGAG
AAATGTTGAAACTACAACGTCGAACTCTTCAGAACCCGAGTGGTTCAAAT
TAGCGcgcaaaaaacagaaaaatgaagaagtcgTATAGTTTTATACAAAT
TTAATTAATTAGGATAGAAGACTCTTTTAGATTATACTGTGCGTTCTTTT
TTTTAGATTCTAAgataatttttgtataaaattaATGGAATAATCTTTGC
TTTTAgggtattttaggctttttaAGGCAGTTTTTACTCACTGTCACTAT
TTTACTCATATTTCACTGTTTACGAATCAATCCAATTTAGAAAAtctatt
tttggaatttagcgATAGTTCAAGGACCTTGAACGACATATttgcagatg
agatggagtttttataagatactttgataattggtcatttgaagtaatga
aaaagaaaatgacgcgttctttaggtaaagtaacaaaattgttttgttac
tggttaacgactaacaaaatcaaataagagcttataaaaaactccatctc
gtcccctATTTGATACTTTAAACAGAAACGCAATCAAGATGATCTTTTGA
AAGTGGAACTACTTACAAGCAGTTATTATTGTTTTTACGTagttattttt
tattgcaatattaTTTATTAGTTTCGTGTAAAAATAGCATTAATTTTTTG
ACACTCGGATAACAAAACTCGGTGAAAAATAATC Run BLAST on NCBI transcript from alignment at scaffold_502:46026..51089+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069521 ID=TCONS_00069521|Name=TCONS_00069521|organism=Clytia hemisphaerica|type=transcript|length=5064bp|location=Sequence derived from alignment at scaffold_502:46026..51089+ (Clytia hemisphaerica)
CGTATATTGGAAGGGGTTTTAGGCTCAAAATCGAGTTTTGATCAAAATGG
TTGTGATTTGTCTTCACACAAATAAcgataataacaataatatagAGGAG
GAAAAATTCAACTTTAAAGACGCTTTCAGCAAATTCAATAATGTCAATGC
TAATAATAATTTGCACACTCCTAAGAGTTACAATGCAGCCAAAAATTTCA
GTCCAGTCAAAAGTTTAACAACTGCCACAAGTGGCAATGCTGCGAACATT
CGAAAAGACTTGGAATTTCTACATAAGAAGAAAGTTACATTGGACAAGCC
AACTCACGATAAACCGATAActgtttcttcttcttcacaAGCGACATCGA
CGTATTCGCGTAATGCTTGAAAgctcttttttcatttgttgtCTACAAAA
TTGGTTCCTTTTTATTTCTTGCTTCTCCAGACGGTCAGGAGAAGCCCGAG
CATTTACTGCATTATTCaataaaaattacatttttcttttcgctttaggt
ttaagggctctgaccatagttaatttttcataattgccgtgtttaaaatg
tgttttctgactgatgtaaccaacaaaactatggcatgttatacattttc
tgttagacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcaacatattattaacgtct
ttttaaagttcataacgtcatttctgcaattaaattcttaattactctga
agggatttgattaaaaagcaatttataaagataattctttgttgaaagtg
ttaaagaacctaaaacataacttttatgttcaaatactaaaatcaatttt
ctgactatggtcagagcccttaatttcaTTTCAGAACTATTTTTTTATAT
CCGTCTTTTACATTTTCAGCTCCCGTCAAACTAGGAGACATCAAGCCGAC
AACCCCACAAATTGAAAATACCGTTGCTAAGGACCGTATCCGTGTCGCGC
CACAAAACCGTCGGAAACCATCCCGATATCGCACCGGAAACGCTCCACCG
AAACCCGCTCGCTCCACGAGTTCGTTTTCCTTTAAGGAAGACTCGTTTTT
AACGAAAATCGATGAAGATTCCGATAATTTCGAAAGTCGTCAAACTACGA
ATGTCAGCCGACATACATCAAACGTCAGCCGGAACTCTGACTGGGATTCA
ATGCCCTCCTATTCACGAAGTAACTCGGAAATGACAAATCGATCTTCGTT
TGATAATACTGAACCGAATTTCAACGATGCTGTCCCCAAAGCATTACGAA
ATAAACATTCGTTCTCGACAGCCGACGATTTTCAACCTCAAAAGCAGAGA
ACCATGGCCCAGCGATCTTTTTCGACCAATTCTCGAGAGAATGTCAACCG
CCCTAAACCACCTATTAAACCGCCCCGAAGCGCCAATTCATCCATACAAA
GCTTAGACGACAATGAAGATCTTCCGGTGAAGAAATTCTCGTTGGGTGAA
TtgaaaagtaaattattttattCCGAATCTTTCGGAAAGAACGACGACGA
GAAACGACTCTCAAGAGATCAAGTTTTCGGTAGTCGGGCTTCAATTGATG
AGAAGGAGAAATCAGCTCCCGAAAAACGACAATCTTACGGTTATGAAAGA
GAATCACCCGGTGACAATCAAACCTCATCCCCCGAAAAGCGACAATCTTT
CGGAGATAAGCGAGAATCGTTCGGAGAGAAACGACAATCATTTGGAGAGA
AACGACAATCTTTCGGAGAGAAACGATTATCTTCGGTCGATACAACACCT
GTCGAAGAAAAACGCCTTTCAAAAGTTTCGTACGGAAGCCGAAACTCCTT
GACgggaaaatcttttgaaattgatgaaaaacgaAACTCAGGCTCGGTGA
CAATACAGTCTTATTCTGTTCCTGGTTTATCTCGAAGTCGCACTTCTTTG
AACAGGGAGTCACCAGAAAAGAAGCCATCGCCTGAAACCACTACAATAAA
AAACCAAGAGGGTTTTTATCGAAGCAAAGAAGATATTTCACAGCAGCGTA
AAAGTGTTCATGAAGAGAAAGAACTTGTTTTCCCCAAATCCCAAGAGGGA
GATTCTTATGGTATGTTGGCAATGGCGTTGACCAGCCCACGACAAGATCG
AAAGATCGAATCCAGCCCTCCCTTATCGAACATCTCTCGATCAAAATCTT
ATTCTGAGAAACTAGAAAACCGAGAGAATAGTTCATATTCTAGTACTAAT
TCAAAGAGTGTTGGCTATATTAACCAAACAGGCGCTAAATCACCACCGGT
CGTTCGTCAGAGGCCAGCTACAAGTCCTCGGAAGCTTCACCGTCCAGATA
AAGAGGAAGAGGAAAAACCGTTTGAGTTCAAGCGTATTTCGTTGAAAAGT
GTTCCAAAAGCTGAGGACTATATGGACAGCAAGGAAAGTGTCGAGAAGGC
GAACGAATCTCATAACACTGCAACGACCTCATCGAACgatattttagatt
ttgttaATAGTGAAATGAACCTTGACGAACCCGTTACCAATCAACCGAAA
TCGTTCTCTCGTACACCGAACGCGAGTACGTCCTCTTATCAAAAGGTTTC
GAGCCCCGTCCGTAAGTCTGAAGACATTGAAACAAACTGTATGGCGTTTG
ACAGCGCCAAATTATCGAGCATCGATTTGAATACGAGTTCCTTTAACGAG
AAATCTTTCGAAGAAAAGCCACGACACGACGTAAAACGAGCTTCTTGGAA
AACTATCGATGAAAAACCGAAAGTTGTCGAAAGTCTTGAATTCAAACggc
attctttaaagaaaatcgaCCGAAATTCCTTCGAACAACACGCCCCTGTT
GAAGACTCTGCCGGATCACCCttagaaatgaaaagacattcgTTAAAGAA
AGTTGATCCACCCTCTTTAGCAGGGGAAGCCAAATCGTTTTCTCTACCTT
CAAATCGAGACGTCAAACCAGAAGTGGAAGAACAGATGGACCGCCCGCCC
CGCCCATTAGCTAAAAACCGCCCTACAGTTCATGGGTCACCAAGTAAAGA
CTTTTCGTTTCAAAGTAGTGATGTTATTCAGCGTTCGAAATCGTTGGGAA
GTAAAGAACAGAAGAGGTTGGGAGACGCCGCTTCTTCGAAAGAAAACCTC
GCATCATCTCCTAGCAACGCTGAACCTGAATGGTTCCGATTGGCTCGACA
AAAACAAGAGAccgacaaagacaaaaacaATGGTTCGACGAATGAGGTAA
GAAAAATTTCTCAGTTCTTCTTTCGTATGGGGTATACTTTTGGTGCttgt
tgaaatctttttagCCGCTCTAATCTAaaataagcaaagaaaaatggGGG
ACATTCCGTCCAAACTAATCGGATACTTGTTTTCACTTGCATCACCTGCG
AATCTAGGTAAAGCTGTAAAAGAAAGAGGTTTTAGTTTTCTATACAAGTC
TAATGACCAAAAAAGCTCAAAACATCATTTGAAATTAATTCCGATTCCCG
ATCTCTTCTTTTTCAGGCAAACAGCAGACCTTTATCACCACCGACcaaac
caaaaccaaaaatcAGTCCACGTCCACCCATTGGTCAAAAGCCAGAAGTC
AGTCCCAGACCTCCGATCGTTGCTAAGAAACCGGTACAAACAACAGTTTC
ACCGACTCGTTCCGGTTCTCGTGTACAGAGAAATGTTGAAACTACAACGT
CGAACTCTTCAGAACCCGAGTGGTTCAAATTAGCGcgcaaaaaacagaaa
aatgaagaagtcgTATAGTTTTATACAAATTTAATTAATTAGGATAGAAG
ACTCTTTTAGATTATACTGTGCGTTCTTTTTTTTAGATTCTAAgataatt
tttgtataaaattaATGGAATAATCTTTGCTTTTAgggtattttaggctt
tttaAGGCAGTTTTTACTCACTGTCACTATTTTACTCATATTTCACTGTT
TACGAATCAATCCAATTTAGAAAAtctatttttggaatttagcgATAGTT
CAAGGACCTTGAACGACATATttgcagatgagatggagtttttataagat
actttgataattggtcatttgaagtaatgaaaaagaaaatgacgcgttct
ttaggtaaagtaacaaaattgttttgttactggttaacgactaacaaaat
caaataagagcttataaaaaactccatctcgtcccctATTTGATACTTTA
AACAGAAACGCAATCAAGATGATCTTTTGAAAGTGGAACTACTTACAAGC
AGTTATTATTGTTTTTACGTagttattttttattgcaatattaTTTATTA
GTTTCGTGTAAAAATAGCATTAATTTTTTGACACTCGGATAACAAAACTC
GGTGAAAAATAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069521-exon-scaffold_502-1491911889:46026..46384 | TCONS_00069521-exon-scaffold_502-1491911889:46026..46384 | Clytia hemisphaerica | exon |
| TCONS_00069521-exon-scaffold_502-1510915933:46026..46384 | TCONS_00069521-exon-scaffold_502-1510915933:46026..46384 | Clytia hemisphaerica | exon |
| TCONS_00069521-exon-scaffold_502-1575043694:46026..46384 | TCONS_00069521-exon-scaffold_502-1575043694:46026..46384 | Clytia hemisphaerica | exon |
| TCONS_00069521-exon-scaffold_502-1491911889:47645..49971 | TCONS_00069521-exon-scaffold_502-1491911889:47645..49971 | Clytia hemisphaerica | exon |
| TCONS_00069521-exon-scaffold_502-1510915933:47645..49971 | TCONS_00069521-exon-scaffold_502-1510915933:47645..49971 | Clytia hemisphaerica | exon |
| TCONS_00069521-exon-scaffold_502-1575043694:47645..49971 | TCONS_00069521-exon-scaffold_502-1575043694:47645..49971 | Clytia hemisphaerica | exon |
| TCONS_00069521-exon-scaffold_502-1491911889:50242..51089 | TCONS_00069521-exon-scaffold_502-1491911889:50242..51089 | Clytia hemisphaerica | exon |
| TCONS_00069521-exon-scaffold_502-1510915933:50242..51089 | TCONS_00069521-exon-scaffold_502-1510915933:50242..51089 | Clytia hemisphaerica | exon |
| TCONS_00069521-exon-scaffold_502-1575043694:50242..51089 | TCONS_00069521-exon-scaffold_502-1575043694:50242..51089 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_502 | supercontig | scaffold_502:46026..51089 + |
Blast
The following BLAST results are available for this feature:
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