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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069522 ID=TCONS_00069522|Name=TCONS_00069522|organism=Clytia hemisphaerica|type=transcript|length=575bp
TTACGgtaatttcaacctttttcttTTAATCCTGCTTAATCTCGTTCTAC
TTTTAGCTAactaattttagcaaaaatgttttttttttatgacgAAGAAA
GGGCGGCTACATTGGCGATGGCtgccaaaaaaagaaaaacgccAACAGCA
ACAGccataattaaaaagaaaaagacaacaacaaccacatcccaaacaac
aacaacaacaaccacatcGAACgccccaacaacaacaacaacaacaacaa
gaaaatCAAGATCAAGATCTTCAAAACGAAAAGTCGGAGGTAGAGGCAAC
AATTTCGTTCAATTGGCTGCAAATAACCATCCAACTGGTGGAAATTTCCC
AAATTTCTCCCTACAACAATACAGGGAGGCCCTTAGAATCGAAAGGCACC
ATAAGCGGCGACAATATAGGGAAGAGCGGAGACATTTAGAGCAACGAGCT
GAACTGTTGGAACGTTTAATCCAACAAGCGGTGAAGCCTTTGAGCTCAAT
TCCACcataataaaaacaacaacacaacaCAACAAAACACAATGCCAGCC
AACAAACCAATTAACACGTGCTACA Run BLAST on NCBI protein sequence of TCONS_00069522-protein >TCONS_00069522-protein ID=TCONS_00069522-protein|Name=TCONS_00069522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MFFFYDEERAATLAMAAKKRKTPTATAIIKKKKTTTTTSQTTTTTTTSNA
PTTTTTTTRKSRSRSSKRKVGGRGNNFVQLAANNHPTGGNFPNFSLQQYR
EALRIERHHKRRQYREERRHLEQRAELLERLIQQAVKPLSSIPP Run BLAST on NCBI transcript from alignment at scaffold_502:73024..77499+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069522 ID=TCONS_00069522|Name=TCONS_00069522|organism=Clytia hemisphaerica|type=transcript|length=4476bp|location=Sequence derived from alignment at scaffold_502:73024..77499+ (Clytia hemisphaerica)
TTACGgtaatttcaacctttttcttTTAATCCTGCTTAATCTCGTTCTAC
TTTTAGCTAactaattttagcaaaaatgttttttttttatgacgAAGAAA
GGGCGGCTACATTGGCGATGGCtgccaaaaaaagaaaaacgccAACAGCA
ACAGccataattaaaaagaaaaagacaacaacaaccacatcccaaacaac
aacaacaacaaccacatcGAACgccccaacaacaacaacaacaacaacaa
gaaaatCAAGATCAAGATCTTCAAAACGAAAAGTCGGAGGTAGAGGCAAC
AATTTCGTTCAATTGGCTGCAAATAACCATCCAACTGGTGGAAATTTCCC
AAATTTCTCCCTACAACAATACAGGGAGGCCCTTAGAATCGAAAGGCACC
ATAAGCGGCGACAATATAGGGAAGAGCGGAGACATTTAGAGCAACGAGCT
GAACTGTTGGAACGTTTAATCCAACAAGCAGTGAAGCCTTTGAGCTCAAT
TCCAGCACAAAACAACAACACAACACAACGCCAGTCAACAAACCAATTAA
CACGTGCTACAAACtacattttattattttatttatttcattttttattt
tatttattcatttatttattcaattatttATTTTCCCATTCACTTGTTAA
GCCGGCTGCTCGGCACGGGAAGTCGTACCGGGTTCTAGGCCaacttttct
taattttcttaacttccTCATTTCTGATGTTTTCTTTCCATCGCACAGTG
GCTGGCCAGCGCTGTTGCCCTCGTATAGAGATGGCTGGTGATCTGCTGGA
AAACCCGTCGGGTCGTAGCGTAAGTACCATTTCCGAATGGTCGCCTCGAA
AAGCTTACACCCGGGTCTCCTGGGGCTAACTCCCCCTTGAGGTCCTGCTC
TCCAAGCGAAAACAATtgttcctaatgaaaatttaaatgaGATAAACGGT
AACCCCATTCACGTTGCAGACCCTGGACCGGATCGGATAACCCAACAGGA
TATCGGAACAATTAACTTCGGATATATCAATTCGAAGCCGCCAATTGGCA
ATCGGTGTTGTGAACTCAACTTCGCTGATCATGCGTCTTGGTTAAAGCAC
ATTAAAAAGGATCATCCTGATGCTCCTATCACCTATCTCTGCTCAAAGTG
CCAGTGCCCAAAACCATCCATCAGATCCGTGTCTACTCACTTCGTCAGAT
GTGAAGGTAATGCAATCGCTCAGGTTGTTGTTCACGAGCGCTTTATGAAC
CAGTATCTCATCGGTAAGTTCCCACAACGCTCCCTAGAATCCATCAAGGG
TCAGCGGAAATCGGCCAAGTATCGAAACATCCTAAATGACATCATCGTCC
GTGAGAGGGACGATAATCCCGTCGCCAGTGGCAGTGACGACGAAGATCAG
GGTCCCGATGCCGGGTTCTCTGATACACCTCCAGATAGTCGAGACCCATT
TTTCCGACAGATCAGAGAGATTGCAGAGGATGATATCGAACacctatctc
ataaaaaaatttggtaatttgactaagaacattgatgtatgcttattaat
agtgattcttatagataaacatgcgttttttgagccaacaattttttttt
gcaaaattctgctaaagccatcttttaccaatgatgttagcctactttca
tgcaaaaaatctgaaaaaattaatgatccaatttttcacaaagtccaaaa
aaacccattttttagccgttttttggcccaaatttggccaaaaataaaaa
ttttttttttcaaaagcgggctccgtcacattttggccactaccattttg
cacctttgtaccaaaaatcaaaagaatcctatgattcaatcccgagaaaa
gttggtaacagacgaacgaacggtcggacggacgaacggactaacacagg
ttaatttataggacctccaccccaccggggtaggtccaacaagggggtta
tgttatcttttttgaacagtgcaattaaaagttggaaaatgttaagtgtt
ggtgcattggtatcattgattatttcgaaaagCCATTTGAAATGAAGGGA
AAATTTGATACAGTTCCTACAATCAGAGGTCCGAGATCAGCTCAATTAGA
TGAATTTTTCACCATTCCTTCTTCTTCTGCCTGTCCTGGGATATCTGATT
TGGATAGCAGTTTGATAGACTGTAGTGTCGAAAACTTATCTCAAAATTCA
AGTGACGACATACTTTCCTCTTCATTGATCCAAAAGgacatttcttttga
aagacaaagaaaaaatgaaagcctCTCTAGTTCATTTCTCGGAGAaatgt
agactggagtcgtttataatgcgtgtaatacagtagtataggcgttatat
gataatacgataattgttacgggataatattagtttgtatttaaacaaaa
atttgttccctccattacttttagttttaattctACTATATCTggattag
tcgtctagcttgctagactaggaGAAATGGCTTCATTGAATTTTAAACCG
TCATCTTCAAGAAGAAAGTCAAAGTTATTAGGAGATACAAAGCTCTTAAA
CAGACAAATAAATGCCTTAACccatgaaaacaagaaacttaaaTACCAAT
TAACTCTTTACAAAACCAAAAATAAACTGCTCAATGTCACTAAACAAGAA
ATCCGTAAAGGATTttataacaaaatgaaaatactcAATCAGAGAATAGA
CAGAAGAAATGATAAGAAAATTGAATTGACCGAGAAGGTCTTAAAGTTAG
AAACTGACGTTGAACTTTACAAGAACATGgctgaaaaaaaatagaaaaaa
agtttggcaTTTAGAAAATGTACCCCGTAAAGACCTAGATAAGATGAAGC
AGCAGAAGGGGCGCATTAGTTATTTAGAGAATCTAAATAAAGAGCTCAAG
CAAAAGTACGAATCGTTGAAAGAAAAGGAGacaataaatgttttttctaa
TGGTCAATACGATGTTATCAATTACTCAAAATGAATATCGCCGTGGAAAG
CGTTTCTCCTGCGATCGAAGCTGTGTTAGGATCAACTTTCTGGAATTAAA
TGTTATAGGTTGCCTTGTAAAGTCTTTAGTTGCTGAATTTTTAGCTGAAA
TGAATTTGGTATCTAGCTCACAAGGTGCCGAGGTAATGCTGAACAGTTCT
CACAATGTTTTACATACAGATGGTACTAAGTACAAGTTCAAAGAAGTTGG
AATATCATGTTTCTACTGATTCAGGCACCCTCACATTAGGAATTGCAGCC
ATGTATAGCGGGGAGGCACAATCTTATTTAGAGGAAACTAAGACTATCCT
GACCCTGATGTCAGAGACATTACCAACACCAAACGCAGAATCTGTAAAGA
ATAAACTGATTCACTCTATTAAAGTATTGATGACGGATAGAACAATTGCA
AACTTaacttttcatcaaaaatttcagaAGTATAGGGAAGGCATCTTACC
AGAAGCTATTGAAAACTACAACCTCTTACCTGAAGAAGAGAAAAAAGATG
TTTCAACCATTCACCACTTCTTTTGTGGTCTGCATATTATACATAATCTT
GGGGTGTATGCTGAAGATGCTTTAATAGAGTGGGGAAAAAGCAGTAGCAG
AGGAAGGTAGTACACATGGCAGAAAGCAACTCTAGCAAATCTAGAACTTA
CAGCCTGCTTTATGAATTGTCCAAACTGACAACATACAACCATTGTGATC
AAATGAGCGGAAAAGCGGAAAGTGGAGAgcgtttttgaaaaagagagaaa
ttgttgataggaTGGTTTCTTTTCTTCAACATCGCTTTAATATTATGTTT
GTATTAGGTGGAGCAGCCTTCTACCATAAAGATCAGTTGAGTGAATTTGC
TTCAACATTGGACGGAACAAAAAAGCTCTTTCCTCTTTTATGGATAAATT
TATCCACTTACggtaatttcaaactttttcttttaatcCTGCTTAATCTC
GTTCTACTTTTAGCTAACTAATtttagcaaaatgtttttttttatgacgA
AGAAAGGGCGGCTACATTGGCGATGGCtgccaaaaaaagaaaaacgccAA
CAGCAACAGccataattaaaaagaaaaagacaacaacaaccacatcccaa
acaacaacaacaaccacatcGAACgccccaacaacaacaacaacaagaaa
atCAAGATCAAGATCTTCAAAACGAAAAGTCGGTATGTAGAGGCAACAAT
TTCGTTCAATTGGCTGCAAATAACCATCCAACTGGTGTGAATTTCCCAAA
TTTCTCCCTACAACAATACAGAGAGGCCCTTAGAATCGAAAGGCACCATA
AGCGGCGACAATAAATATAGGGAAGAGCGGAGACATTTAGAGCAACGAGC
TGAACTGTTGGAACGTTTAATCCAACAAGCGGTGAAGCCTTTGAGCTCAA
TTCCACcataataaaaacaacaacacaacaCAACAAAACACAATGCCAGC
CAACAAACCAATTAACACGTGCTACA Coding sequence (CDS) from alignment at scaffold_502:73024..77499+ >TCONS_00069522 ID=TCONS_00069522|Name=TCONS_00069522|organism=Clytia hemisphaerica|type=CDS|length=870bp|location=Sequence derived from alignment at scaffold_502:73024..77499+ (Clytia hemisphaerica)
atgttttttttttatgacgAAGAAAGGGCGGCTACATTGGCGATGGCtgc
caaaaaaagaaaaacgccAACAGCAACAGccataattaaaaagaaaaaga
caacaacaaccacatcccaaacaacaacaacaacaaccacatcGAACgcc
ccaacaacaacaacaacaacaacaagaaaatCAAGATCAAGATCTTCAAA
ACGAAAAGTCGGAGGTAGAGGCAACAATTTCGTTCAATTGGCTGCAAATA
ACCATCCAACTGGTGGAAATTTCCCAAATTTCTCCCTACAACAATACAGG
GAGGCCCTTAGAATCGAAAGGCACCATAAGCGGCGACAATATAGGGAAGA
GCGGAGACATTTAGAGCAACGAGCTGAACTGTTGGAACGTTTAATCCAAC
AAGCGGTGAAGCCTTTGAGCTCAATTCCACcataaatgttttttttttat
gacgAAGAAAGGGCGGCTACATTGGCGATGGCtgccaaaaaaagaaaaac
gccAACAGCAACAGccataattaaaaagaaaaagacaacaacaaccacat
cccaaacaacaacaacaacaaccacatcGAACgccccaacaacaacaaca
acaacaacaagaaaatCAAGATCAAGATCTTCAAAACGAAAAGTCGGAGG
TAGAGGCAACAATTTCGTTCAATTGGCTGCAAATAACCATCCAACTGGTG
GAAATTTCCCAAATTTCTCCCTACAACAATACAGGGAGGCCCTTAGAATC
GAAAGGCACCATAAGCGGCGACAATATAGGGAAGAGCGGAGACATTTAGA
GCAACGAGCTGAACTGTTGGAACGTTTAATCCAACAAGCGGTGAAGCCTT
TGAGCTCAATTCCACcataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069522-exon-scaffold_502-1491911889:73024..73456 | TCONS_00069522-exon-scaffold_502-1491911889:73024..73456 | Clytia hemisphaerica | exon |
| TCONS_00069522-exon-scaffold_502-1510915933:73024..73456 | TCONS_00069522-exon-scaffold_502-1510915933:73024..73456 | Clytia hemisphaerica | exon |
| TCONS_00069522-exon-scaffold_502-1575043694:73024..73456 | TCONS_00069522-exon-scaffold_502-1575043694:73024..73456 | Clytia hemisphaerica | exon |
| TCONS_00069522-exon-scaffold_502-1491911889:77358..77499 | TCONS_00069522-exon-scaffold_502-1491911889:77358..77499 | Clytia hemisphaerica | exon |
| TCONS_00069522-exon-scaffold_502-1510915933:77358..77499 | TCONS_00069522-exon-scaffold_502-1510915933:77358..77499 | Clytia hemisphaerica | exon |
| TCONS_00069522-exon-scaffold_502-1575043694:77358..77499 | TCONS_00069522-exon-scaffold_502-1575043694:77358..77499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_502 | supercontig | scaffold_502:73024..77499 + |
Blast
The following BLAST results are available for this feature:
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