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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069527 ID=TCONS_00069527|Name=TCONS_00069527|organism=Clytia hemisphaerica|type=transcript|length=1831bp
tttttgatgaaattaatgTTACGATTTATCTCCAAATTTCTATATAAATA
TATTCTTTCTCTTTACAGGTCAAATCTCTCTATCCTTGCATGGAGTTTGT
TAAGCTTAAACTGGATGTGGTCTTTCCTGTGGTAGTGAAGTGGTTCCTAT
CACGGGAATTCAAAGAAGATCATGAAGCCATCGAATACTTCACGCAAAAC
CGTTTGGACTTCCGGTTCTGGGATTCTCGTGATTCTGAAGTATCCTTTGA
GAGTCCGCCAGCAAAAAGGCGAAAACCCAATGAATCGACGAAAAAGGAAT
AGCACGAGTGCAGaaaaacccaattttttaaTGCGACGCAGTTGCGCTTG
CTTTGCTTTGTCCACAAGGAAATGATAACTGATCCGACGAAAAGCATCGA
CAACGTCGTATACAGTACCCTGAATGACAAATATCGCGAGATATATGGGT
TCGACGAGGTCGACAAAATCTCCATCACAAAGGAAAGGCCGTGGCAAAAG
ATTAAGGAGGTGATCAGAAATATTCGGACGAAAGCTGTCAAGGACGCTGA
TGGATTCAAAGAGTTCATGTTGGAGGGCAAAGCCATATGGCGAAAATCTT
TTTTACCCgagtaaaaatcttttttttcctaAGGTTCCTTTATTGTCTTT
AGTTATCAGCTCTGCCAATAATATTAATAGCTAATGATCAACTTCTTCTC
TATCGATCGGCATATAAATATACTCCTTAAATAACTTTTCATCGAGATCA
TCGAAGCACCGCACGAGTCGATCGTCCGTGACCTTCTCTCCAGTTGCGCG
CTTCACAGATTTTTATTTCGTCTAAGCTAATGatttttcttcattcgttt
GCATTCTTTTTTCGTTGATTCATTGGGTTTTCACAGTTAGGGCATTGTCC
GGAACGGTTCAGAATTTGTTTACTAAAAATATAATTACATTTTGAAGGAT
TTCCTACAGTGATGAATCAAGGGCATCTTGTGTTTCTTGTGGTATCCCAG
TGACTCATAATTCACGTCTCACTAGggttttctgtttttttatttagaaa
caTACATTTACTATTGTGTACGATACGAGTGTACGATTTCAGCTCGTTTT
TGCATTTNAACATACATTTACTATTGTGTATGATACGAGTGTACGATTTC
AGCTCGTTTTTGCATTTTCTAACGCCTCAATCAGCCGTTCAGCACCTTTG
TCATTTTAGATATTTGCTATTTTAAATCACACtagctttcttttctttta
tctAGCTGCATATTCTCATAACTAAATCTTTGCGTTTTTTCAATTCGTCA
GAAACTAGATCAGTTCTCTCCCATCCTCTTTGCGTTCGTTTTACACATGT
TAGGTATCATTTGAGGTATTCCATGGAAAGGTTCAGAATTTCGAAGGATT
TCTTCCAGTGAGGAATCAAGTGCATCCTGTGCTTTTCCTGGTATCCCAGT
GACTCATAATTTACGTCTCACTAGGGTTTTCTGTTATTTATTTAGTAACA
TACAATTACTATTTAGAAACATTTACTAACGTGTCAAGATTTAGTTACTT
TTACTTTTGTTCCTGTTAAACTTGTAATTAGTTAgcagtttaaaaaaaag
acattaTCTTCTAAAGACAAATCTAACCCTAACAAACTCTGTGTCTTTCA
GCTCTGAATACCATAATACGTTCTGACCCATAGTTCTATAATCAATATTC
AATAGAAAATATTGATAATtaataaataaagaaaattaaaaagttatatT
ATATCCCGAATTGTAGGTACTTTAAGTCCCGATTTTCcaggtttcaattt
ttttccgcCGCGGTTTTCCGGCGGGCGTTTT Run BLAST on NCBI transcript from alignment at scaffold_502:95675..98741+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069527 ID=TCONS_00069527|Name=TCONS_00069527|organism=Clytia hemisphaerica|type=transcript|length=3067bp|location=Sequence derived from alignment at scaffold_502:95675..98741+ (Clytia hemisphaerica)
tttttgatgaaattaatgTTACGATTTATCTCCAAATTTCTATATAAATA
TATTCTTTCTCTTTACAGGTCAAATCTCTCTATCCTTGCATGGAGTTTGT
TAAGCTTAAACTGGATGTGGTCTTTCCTGTGGTAGTGAAGTGGTTCCTAT
CACGGGAATTCAAAGAAGATCATGAAGCCATCGAATACTTCACGCAAAAC
CGTTTGGACTTCCGGTTCTGGGATTCTCGTGGTAAGTTTGGTACCATAAA
TGCTCCGAAATATTAGTACTTTTTTTGCTAAGAACACATCAATATAGAAA
AGATTGCGCCCGCTCCAGAACGCCCACGTTCCTTCGCGTGTTCACATGGC
GAAGAAAATAAGTTAAAGCCATCAACCATTCATAGAATAGAAATGTCAGA
GGAATATTAATTGAAAAGTCTCTCGGAATATGACAGAAAGGCGAACGAAA
GAGTGCCATATTGTTGGAATAATATACTTTACTGAGTCCagcattttaaa
gttttgatgacgtcatcggccCAAATTGCCTATAAACCTATTTCCTAAGT
CAATCATCAAGCCTCATAACATATCCCATTGTATTCTCTGTGAAATTTGC
AGTCTCGTCTCGTCAGTTTGACGCCTTATAATGTCAACCCTCCATTCGCa
aatgttaatatttttgcgGTCAATGGGTAGCCATTTTagtgttttgtgac
gtcattgtggcccaaaatgacgtcatgaaagGGTTAATAGACTTTCGTAT
CGCTCAAGAGAGTTATTAATCTAACCCAACAGATCTGCCATAAAATTCCC
gttccaatgaggggtcaaccatcccCATATATCGTCTCAATCCAAAGTTA
TCGCAATTTTAACATTCCGTGACGTCATCATTGGGTCTAAATTACCCCCA
AATCAAATTATTTTACAAGTCGAACCTCAAGCCTCATAACCTGTTCCATT
GAGAAGCAGCTCAAAGTTGATCTGACGGAAACTTTAGGGGCACCCCCCTA
CCAGTACCCCTACAtactcccaaccctaccggtgcccctactgACCCTCT
ACCGATGctgctcccaaccctaccggtgcccctatgACTcacgagctcca
accctaaccctaactgatttTATCCGAAACCCAAtcaaaaaatcgggaaa
tcgggaaaatttCGAATTAAAGTTTCCGTCAGATCAGGTTTGAGCTGCTT
CTCAATGGAACAGGTTATGAGGCTTAAGGTTCGACttggaaaataatttg
atttgGTGTGGTTGGGAATATTGCATGTAAATTAGTAGTTTTGAATTTCG
TTTTCTGCCGTGTCTCGGTGGCGCAGTGGAGAGCGTGCGGGATTTCAAAT
ACAATGGttgtgggttcgaatcccatcgtCGACGAATGTTCTGAAGTTTC
TGGAAATCGTTCAGAAACTATGTCTGTTACTGGTCTCTTACTGAtatatt
ttaattgttttgtttagATTCTGAAGTATCCTTTGAGAGTCCGCCAGCAA
AAAGGCGAAAACCCAATGAATCGACGAAAAAGGAATAGCACGAGTGCAGa
aaaacccaattttttaaTGCGACGCAGTTGCGCTTGCTTTGCTTTGTCCA
CAAGGAAATGATAACTGATCCGACGAAAAGCATCGACAACGTCGTATACA
GTACCCTGAATGACAAATATCGCGAGATATATGGGTTCGACGAGGTCGAC
AAAATCTCCATCACAAAGGAAAGGCCGTGGCAAAAGATTAAGGAGGTGAT
CAGAAATATTCGGACGAAAGCTGTCAAGGACGCTGATGGATTCAAAGAGT
TCATGTTGGAGGGCAAAGCCATATGGCGAAAATCTTTTTTACCCgagtaa
aaatcttttttttcctaAGGTTCCTTTATTGTCTTTAGTTATCAGCTCTG
CCAATAATATTAATAGCTAATGATCAACTTCTTCTCTATCGATCGGCATA
TAAATATACTCCTTAAATAACTTTTCATCGAGATCATCGAAGCACCGCAC
GAGTCGATCGTCCGTGACCTTCTCTCCAGTTGCGCGCTTCACAGATTTTT
ATTTCGTCTAAGCTAATGatttttcttcattcgtttGCATTCTTTTTTCG
TTGATTCATTGGGTTTTCACAGTTAGGGCATTGTCCGGAACGGTTCAGAA
TTTGTTTACTAAAAATATAATTACATTTTGAAGGATTTCCTACAGTGATG
AATCAAGGGCATCTTGTGTTTCTTGTGGTATCCCAGTGACTCATAATTCA
CGTCTCACTAGggttttctgtttttttatttagaaacaTACATTTACTAT
TGTGTACGATACGAGTGTACGATTTCAGCTCGTTTTTGCATTTNAACATA
CATTTACTATTGTGTATGATACGAGTGTACGATTTCAGCTCGTTTTTGCA
TTTTCTAACGCCTCAATCAGCCGTTCAGCACCTTTGTCATTTTAGATATT
TGCTATTTTAAATCACACtagctttcttttcttttatctAGCTGCATATT
CTCATAACTAAATCTTTGCGTTTTTTCAATTCGTCAGAAACTAGATCAGT
TCTCTCCCATCCTCTTTGCGTTCGTTTTACACATGTTAGGTATCATTTGA
GGTATTCCATGGAAAGGTTCAGAATTTCGAAGGATTTCTTCCAGTGAGGA
ATCAAGTGCATCCTGTGCTTTTCCTGGTATCCCAGTGACTCATAATTTAC
GTCTCACTAGGGTTTTCTGTTATTTATTTAGTAACATACAATTACTATTT
AGAAACATTTACTAACGTGTCAAGATTTAGTTACTTTTACTTTTGTTCCT
GTTAAACTTGTAATTAGTTAgcagtttaaaaaaaagacattaTCTTCTAA
AGACAAATCTAACCCTAACAAACTCTGTGTCTTTCAGCTCTGAATACCAT
AATACGTTCTGACCCATAGTTCTATAATCAATATTCAATAGAAAATATTG
ATAATtaataaataaagaaaattaaaaagttatatTATATCCCGAATTGT
AGGTACTTTAAGTCCCGATTTTCcaggtttcaatttttttccgcCGCGGT
TTTCCGGCGGGCGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069527-exon-scaffold_502-1491911889:95675..95905 | TCONS_00069527-exon-scaffold_502-1491911889:95675..95905 | Clytia hemisphaerica | exon |
| TCONS_00069527-exon-scaffold_502-1510915933:95675..95905 | TCONS_00069527-exon-scaffold_502-1510915933:95675..95905 | Clytia hemisphaerica | exon |
| TCONS_00069527-exon-scaffold_502-1575043694:95675..95905 | TCONS_00069527-exon-scaffold_502-1575043694:95675..95905 | Clytia hemisphaerica | exon |
| TCONS_00069527-exon-scaffold_502-1491911889:97142..98741 | TCONS_00069527-exon-scaffold_502-1491911889:97142..98741 | Clytia hemisphaerica | exon |
| TCONS_00069527-exon-scaffold_502-1510915933:97142..98741 | TCONS_00069527-exon-scaffold_502-1510915933:97142..98741 | Clytia hemisphaerica | exon |
| TCONS_00069527-exon-scaffold_502-1575043694:97142..98741 | TCONS_00069527-exon-scaffold_502-1575043694:97142..98741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_502 | supercontig | scaffold_502:95675..98741 + |
Blast
The following BLAST results are available for this feature:
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