TCONS_00069613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069613
Unique NameTCONS_00069613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length758

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069613 ID=TCONS_00069613|Name=TCONS_00069613|organism=Clytia hemisphaerica|type=transcript|length=758bp
CTGATCTGTCGGAAAAATGGGTCTCGACTATCTGGAGGTGTATCAGAGAA
CCCGGCATCGGGACCCTGATCTTCGTCGTCACTGCCACTGGCGACGGGAT
TATCGTCCCTCTCACGGACGATGATGTCATTTAGGATGTTTCGATACTTG
GCCGATTTCCGCTGACCCTTGATGGATTCTAGGGAGCGTTGTGGGAACTT
ACCGATGAGATACTGGTTCATAAAGCGCTCGTGAACAACAACCTGAGCGA
TTGCATTACCTTCACATCTGACGAAGTGAGTAGACACGGATCTGATGGAT
GGTTTTGGGCACTGGCACTTTGAGCAGAGATAGGTGATAGGAGCATCAGG
ATGATCCTTTTTAATGTGCTTTAACCAAGACGCATGATCAGCGAAGTTGA
GTTCACAACACCGATTGCCAATTGGCGGCTTCGAATTGATATATCCGAAG
TTAATTGTTCCGATATCCTGTTGGGTTATCCGATCCGGTCCAGGGTCTGC
AACGTGAATGGGGTTACCGTTTATCtcatttaaattttcattaggaacaA
TTGTTTTCGCTTGGAGAGCAGGACCTCAAGGGGGAGTTAGCCCCAGGAGA
CCCGGGTGTAAGCTTTTCGAGGCGACCATTCGGAAATGGTACTTACGCTA
CGACCCGACGGGTTTTCCAGCAGATCACCAGCCATCTCTATACGAGGGCA
ACAGCGCTGGCCAGCCACTGTGCGATGGAAAGAAAACATCAGAAATGAgg
aagttaag
Run BLAST on NCBI

transcript from alignment at scaffold_502:73731..74488

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069613 ID=TCONS_00069613|Name=TCONS_00069613|organism=Clytia hemisphaerica|type=transcript|length=758bp|location=Sequence derived from alignment at scaffold_502:73731..74488 (Clytia hemisphaerica)
cttaacttccTCATTTCTGATGTTTTCTTTCCATCGCACAGTGGCTGGCC
AGCGCTGTTGCCCTCGTATAGAGATGGCTGGTGATCTGCTGGAAAACCCG
TCGGGTCGTAGCGTAAGTACCATTTCCGAATGGTCGCCTCGAAAAGCTTA
CACCCGGGTCTCCTGGGGCTAACTCCCCCTTGAGGTCCTGCTCTCCAAGC
GAAAACAATtgttcctaatgaaaatttaaatgaGATAAACGGTAACCCCA
TTCACGTTGCAGACCCTGGACCGGATCGGATAACCCAACAGGATATCGGA
ACAATTAACTTCGGATATATCAATTCGAAGCCGCCAATTGGCAATCGGTG
TTGTGAACTCAACTTCGCTGATCATGCGTCTTGGTTAAAGCACATTAAAA
AGGATCATCCTGATGCTCCTATCACCTATCTCTGCTCAAAGTGCCAGTGC
CCAAAACCATCCATCAGATCCGTGTCTACTCACTTCGTCAGATGTGAAGG
TAATGCAATCGCTCAGGTTGTTGTTCACGAGCGCTTTATGAACCAGTATC
TCATCGGTAAGTTCCCACAACGCTCCCTAGAATCCATCAAGGGTCAGCGG
AAATCGGCCAAGTATCGAAACATCCTAAATGACATCATCGTCCGTGAGAG
GGACGATAATCCCGTCGCCAGTGGCAGTGACGACGAAGATCAGGGTCCCG
ATGCCGGGTTCTCTGATACACCTCCAGATAGTCGAGACCCATTTTTCCGA
CAGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043349XLOC_043349Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069613-exon-scaffold_502-1491911889:73731..74488TCONS_00069613-exon-scaffold_502-1491911889:73731..74488Clytia hemisphaericaexon
TCONS_00069613-exon-scaffold_502-1510915933:73731..74488TCONS_00069613-exon-scaffold_502-1510915933:73731..74488Clytia hemisphaericaexon
TCONS_00069613-exon-scaffold_502-1575043694:73731..74488TCONS_00069613-exon-scaffold_502-1575043694:73731..74488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_502supercontigscaffold_502:73731..74488 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57094	2.1791	1.47279	0.74804	2.7029	2.13481	0.996989	1.69378	0.272281	0.765364	0.553955	0.719393	0.214892	0.368628	0.256863	0.0787582	0.388095	0.397785	0	0.287538	0.249923	0.182855	0.683133	0.273907	0.485676	1.1146	0.265831	0	0.502081	0.365387
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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