TCONS_00069655 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069655
Unique NameTCONS_00069655
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069655 ID=TCONS_00069655|Name=TCONS_00069655|organism=Clytia hemisphaerica|type=transcript|length=731bp
GCTGTTGGCGATGGagaatatttttgtatttcgCTGAATTTCACATAGTT
TGTTTACCTTTTTGCTTTAAACACAAAACAGAGATAATCTTTTTGGTAGC
TGCAAATACATggtaatcttctttttttttaatttagagaAAAGTTACAC
AGTTAGAAtggaaaagtttgaagaaagtgTTAGATTCGCTTGTAGACATT
TTGAGATTGAACATTTTCATGACGAGCAAATTGAATGCATAAGACAATTC
TTTGCTGGCAAAAATGTATTTTGTAGTGTTCCTACAGGCTTTGGAAAAAG
CCTCATTTATCAAAGCTTGCCACTGATACATGATTTTATGTATGAGTCTG
TCCCAGACAANACAAATTGAATGCACAAGACAATTCTTTGCTGGCAAAAA
TGTATTTTGTAGTGTTCCTACAGGCTTTGGAAAAAGCCTCATTTATCAAA
GCTTGCCACTGATACATGATTTTATGTATGAGTCTGTCCCAGACAAACCG
GTCTATTCGACAATTTTAATAATCTCCCCATTGAAAGCTTTGATGGCCGA
CCAAATGAATACCCTCCAAAAGCAAGGATTCAATGCTAAAATCCTGAACT
GTCACACAAAGTTAGATGACATTATAACTGATGACTATGAGGGCGGTGTG
GCAGTCAGTCATCTTTTTTGTTCGCCGGAAGTATTAGATATCCCAGTTTG
GAGAAATGCATTGTCATCCCAAACATTTAAA
Run BLAST on NCBI

protein sequence of TCONS_00069655-protein

>TCONS_00069655-protein ID=TCONS_00069655-protein|Name=TCONS_00069655-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MILCMSLSQTXQIECTRQFFAGKNVFCSVPTGFGKSLIYQSLPLIHDFMY
ESVPDKPVYSTILIISPLKALMADQMNTLQKQGFNAKILNCHTKLDDIIT
DDYEGGVAVSHLFCSPEVLDIPVWRNALSSQTFK
Run BLAST on NCBI

transcript from alignment at scaffold_503:141891..142621

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069655 ID=TCONS_00069655|Name=TCONS_00069655|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at scaffold_503:141891..142621 (Clytia hemisphaerica)
TTTAAATGTTTGGGATGACAATGCATTTCTCCAAACTGGGATATCTAATA
CTTCCGGCGAACAAAAAAGATGACTGACTGCCACACCGCCCTCATAGTCA
TCAGTTATAATGTCATCTAACTTTGTGTGACAGTTCAGGATTTTAGCATT
GAATCCTTGCTTTTGGAGGGTATTCATTTGGTCGGCCATCAAAGCTTTCA
ATGGGGAGATTATTAAAATTGTCGAATAGACCGGTTTGTCTGGGACAGAC
TCATACATAAAATCATGTATCAGTGGCAAGCTTTGATAAATGAGGCTTTT
TCCAAAGCCTGTAGGAACACTACAAAATACATTTTTGCCAGCAAAGAATT
GTCTTGTGCATTCAATTTGTNTTGTCTGGGACAGACTCATACATAAAATC
ATGTATCAGTGGCAAGCTTTGATAAATGAGGCTTTTTCCAAAGCCTGTAG
GAACACTACAAAATACATTTTTGCCAGCAAAGAATTGTCTTATGCATTCA
ATTTGCTCGTCATGAAAATGTTCAATCTCAAAATGTCTACAAGCGAATCT
AAcactttcttcaaacttttccaTTCTAACTGTGTAACTTTtctctaaat
taaaaaaaaagaagattaccATGTATTTGCAGCTACCAAAAAGATTATCT
CTGTTTTGTGTTTAAAGCAAAAAGGTAAACAAACTATGTGAAATTCAGcg
aaatacaaaaatattctCCATCGCCAACAGC

Coding sequence (CDS) from alignment at scaffold_503:141891..142621

>TCONS_00069655 ID=TCONS_00069655|Name=TCONS_00069655|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_503:141891..142621 (Clytia hemisphaerica)
TTTAAATGTTTGGGATGACAATGCATTTCTCCAAACTGGGATATCTAATA
CTTCCGGCGAACAAAAAAGATGACTGACTGCCACACCGCCCTCATAGTCA
TCAGTTATAATGTCATCTAACTTTGTGTGACAGTTCAGGATTTTAGCATT
GAATCCTTGCTTTTGGAGGGTATTCATTTGGTCGGCCATCAAAGCTTTCA
ATGGGGAGATTATTAAAATTGTCGAATAGACCGGTTTGTCTGGGACAGAC
TCATACATAAAATCATGTATCAGTGGCAAGCTTTGATAAATGAGGCTTTT
TCCAAAGCCTGTAGGAACACTACAAAATACATTTTTGCCAGCAAAGAATT
GTCTTGTGCATTCAATTTGTNTTGTCTGGGACAGACTCATACATAAAATC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043370XLOC_043370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069655-exon-scaffold_503-1491911889:141891..142621TCONS_00069655-exon-scaffold_503-1491911889:141891..142621Clytia hemisphaericaexon
TCONS_00069655-exon-scaffold_503-1510915933:141891..142621TCONS_00069655-exon-scaffold_503-1510915933:141891..142621Clytia hemisphaericaexon
TCONS_00069655-exon-scaffold_503-1575043694:141891..142621TCONS_00069655-exon-scaffold_503-1575043694:141891..142621Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069655-proteinTCONS_00069655-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:141891..142621 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13593	0.0662766	0.23086	0.150574	2.93295	1.52096	3.49519	2.45412	3.09273	2.34107	1.7903	2.71586	1.98886	1.36132	0.926227	1.53239	0.510211	1.72573	1.22822	1.36085	2.6285	1.82698	0.935128	1.62949	1.60536	2.8655	1.95706	1.1935	1.0561	0.614858
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069655 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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