TCONS_00069701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069701
Unique NameTCONS_00069701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069701 ID=TCONS_00069701|Name=TCONS_00069701|organism=Clytia hemisphaerica|type=transcript|length=549bp
CAAGAAGAGATCTAACTATCAACGATGAGGGCGCCTTcttatttctattt
cttcacCTTCCTTGCTCATATTCAGGTCAATCTTGGTTTGAAATGTCCAA
AGAGATCGATGCTACCACACACATTAGATGGCGGAGTCACTTATCGTTTG
AAATTACACGAACTCACTATCGAGTGTAGGCCTTCAGAAGAATGTTGCCC
GCGAGAAATGGGTTGTTGCACCCCGGAAATTGGTAAAAAAGTATGgaTCG
GTGTAGGACTGGGCGTGGCACTTGTTATATGCTTATTTATTGTTTATTGT
TATtggaagaaaagaaaagacaGAAGAAAACGCGTTGGCGATTTACCGAA
TTCCGAAACGGAAGAAAAACggaggaaaaagaaaagaacaaaaaaatgaa
aggcTTTACTTTGGCTACCCCTCAAAACCGTTGATGTGACAGTTGATTTT
TATAtcagtttttagtttttaaaactttgtgcATACTTTTTAGAACAATT
AAACGATATTTTAACCTTTTGCACAAGTACATTTTTTCCAAGTTCACTA
Run BLAST on NCBI

protein sequence of TCONS_00069701-protein

>TCONS_00069701-protein ID=TCONS_00069701-protein|Name=TCONS_00069701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MRAPSYFYFFTFLAHIQVNLGLKCPKRSMLPHTLDGGVTYRLKLHELTIE
CRPSEECCPREMGCCTPEIGKKVWIGVGLGVALVICLFIVYCYWKKRKDR
RKRVGDLPNSETEEKRRKKKRTKK
Run BLAST on NCBI

transcript from alignment at scaffold_506:48..3591-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069701 ID=TCONS_00069701|Name=TCONS_00069701|organism=Clytia hemisphaerica|type=transcript|length=3544bp|location=Sequence derived from alignment at scaffold_506:48..3591- (Clytia hemisphaerica)
CAAGAAGAGATCTAACTATCAACGATGAGGGCGCCTTCTTATTTCTATTT
CTTCACCTTCCTTGCTCATATTCAGGTAGGTTGCATCTTTTACTTTTACC
TTCACTTCTATAATACATCCCCTTATCATAGACTCGGTAGGGGAGGGGAT
AGAAATAACGGACCAAAACTCCATTGGGTGTATTGATAGTCCCATGTTTT
TATGTGGCTGAGGGTTTGAATTCAATTGTGTTCGAGCCAGAAAATTTAGT
GAAGAAAAACAGCACAATATTTTGCAGTGAGGGTTTGCTTATCTGATTAC
TTTCCGCGCGGAAAAAAATAGTGTATAATTTTCAACTGGGGACGATATTT
TTGCCCAATTTTTCCAGTGAGACGGGGTCCCATAAGGTCTGTGAGAAGGG
GATGTTAAAATAAAATAATCAAATATAAATTTTTCCTTTAAAATATTATT
ATAATTTTTTTCTGCCGGTTTTAATGTACAGATTGAACCAGATCCTGCCT
GAATACGGGTTTATCATTTTCCTGTACCAGATGAACACGACTTTTTTTCG
ACAAATTGCAAAGTTTGTTGGGAGGGATGATTGGTCATGAGTGAAAAAAG
CTCTCTTTGTCGACGGGTCTGCTTGGGTAGGCCGCTGGCATCCATTAACT
GACGGTTTTGTGTTCCAACCATCTGTGTTATTCATGATATGCACCATTGC
AATGTCTTTCACTGACCCAACAGATGATTGGTTGAAAGTGACGTATTGAC
TGGTTTTATGTCACTTACAACCAATCAGCTGTTGGCTCTTTGAAGCGATG
TTGAAGACATTGCAGTGATGCATATCATGAATAGACCAAACCAGTTAAGA
TCTATTTCTATAGCAAAATGCCTGTCTCCGCCCAATTCTTTTTTTTTACC
AATAAAAGTGAAATCTCACTTTGTCCCAGGATCAAAATCCGAGTGTTTTT
TGGGTATTTCCCTCACTTTTTGTCCCATGAAGCAAAAAAAAGAAACCATG
GGACACACACTTTTTTTGCTTTGGCATGTTGCATTGCACCAAAAACTTCT
CGTGCCCCAAGCCTTAAATTGTAAGAAAATCTGCGCCAAACAAAGATATT
CCATTCCAATGATTCTCGAGACATTAATCAAATTAGTTGACACTCTTAAA
CAATCATTTACAATTCTGTTCCAGGTCAATCTTGGTTTGAAATGTCCAAA
GAGATCGATGCTACCACACACATTAGATGGCGGAGTCACTTATCGTTTGA
AATTACACGAACTCACTATCGAGTAGGTTACAGTTCTACACAAGTCAGTA
GCGAGTTTGTATATCTGTGTTTATTGACATGGAGACGGCAAGCCTCTAAT
TTGTCTAGATCATAACTGACTGCGGACGACGGTAAATCAACACTTTTACC
GTCCTTACCGGTCAGAACTGTGGGCAATTCCAAATCGCTTTAGTCACTCT
GCCGTCCTCAAAAGTGAAAATACATAAACTCGATAGGGCTGCATCCAGTA
CATCAAAAACACTGAGTAGTCTCTGGACTATCCTGTACCAAAATCTTTCT
TGTTACACAACAAGTCTTTATTCGATTTAATGAACTCTTTAGCAATGTAA
GACAGTTTATAAAAGGTTTATAATTTGAATATTTCCACTCATTACCCATT
TTACTTTAATACACATAGCTCTCTATGTGTACTTGTGTCGTAGTTAACAC
CGCCCAGCTGGCACACAACGTTGTTTTAACGTTTTTCTAACGTTCACAAC
GTCCATTTAACGTTAGATGAACGTTGAAACAACGTTGTGTGCCAGCTGGG
TAATAGAAAATACAGTTAACTCTTTATAGTTCGAATTTCTATAATTCGAA
TCTTTCTCTAATTCGAAGAAAATTTTTGGTGCCTTGAAGATCAAATTAAA
GAGACTGTATATTAAATCCTGGTTGAAAAATATTGAGAATTCCGGCTATT
TTAACGTTTTTCAAGATTGAAAGTTCGGGCGAGAAAGCCGATTTTGGGCT
ATCTCTTTAATTTAATTGAATATTTCAATTTGGGAGGGGTTGGCAGACTT
CCAGGCTATATTCTGAGCCTTATTAGACTATTTTTGAACTTTTGGATCCT
CAGATCCTTAGGTCGTAAGTCTAGCGTTAAAACTGAGAGTTAAAACTCAA
ACCTTCGAACCTACTTTAGAGCACTTAAAAATCGATTGTGGTTTCAAAAC
TTCCCGGAGAATTTCCCTTTTTTTCTCAAATAAAATGACCTTGATTGTAG
TTCTATTCTTGACCTTGTAAACATCTTCAATTTTTCATTAGGTGTAGGCC
TTCAGAAGAATGTTGCCCGCGAGAAATGGGTTGTTGCACCCCGGAAATTG
GTAAAAAAGTATGGTAAGTGATGAAATAATACCTTATCGGGGAAAACCAA
GTGACGAATATTTTTCCCCGACGAAAATTTTCCCCCGACGAAGTTTTCCC
CGATAAGGTAGGCTAATAAATGCCGCATTTTGTTGGATTGATTACGACAA
TCTAATCTTAGGAAACTTGCAGAACAAGCTGCATGTTTTCTTTTTTATAA
GAACATTTTAAATTTTTGAAGCCTTCGGATGTTCTTAACTTTTTTGAGTT
TTAAGCCTAAAAATGTTCTTAATATGTTCTTATTTTATTCGCCATTTTTT
GAGTATTTTGTCTATTTTCCTATGAAATCAGGTGTTTCAGAGCCTTACAA
TGTTCTTAACTTGTTTTTAACATTTTGTCCATCCAAGCCTTATGTTCTTA
TATAGTATGTTCTTATAAAAAAGCGTGTAGGGCATTATTTTTTTTCTTGT
GATAACCATTTGAAATAATACTATGAAAATTGAAAATGTAAAATGTCACA
TGTTAAAAAATGTTGAAAAAATCTGATATTCATATCCTTCCTATTGTTTT
ATAACAAAGGTCTCAAGTTTATTCAACTCAAAAACATTCTTTGTAAGCCT
TGTGGTAATTCCGAACTGTCTCAAAGATTCAAGAAGACCCCCTATTCATA
TTTATCCTTTAACTAAGCCAATTCAAGCCCGGCGGAACAAGCATAAAAGT
TGTGAGGCTGAAGGCTCAAAATGAGATAAATTACGCCAGGAATTTGAGAG
AAAATCTCATTTGCTCCAAATTGGGAAGGCTGAAGTCCCCCAGTCTCCCT
GCTTCCGCCATGCCAGCAATTCTTGCTTGAAATTGATCATTTCCAGAGTT
GATACAGGGGTGTAACAAGATCATATTTTTTTTTTCATAGGATCGGTGTA
GGACTGGGCGTGGCACTTGTTATATGCTTATTTATTGTTTATTGTTATTG
GAAGAAAAGAAAAGACAGAAGAAAACGCGTTGGCGATTTACCGAATTCCG
AAACGGAAGAAAAACGGAGGAAAAAGAAAAGAACAAAAAAATGAAAGGCT
TTACTTTGGCTACCCCTCAAAACCGTTGATGTGACAGTTGATTTTTATAT
CAGTTTTTAGTTTTTAAAACTTTGTGCATACTTTTTAGAACAATTAAACG
ATATTTTAACCTTTTGCACAAGTACATTTTTTCCAAGTTCACTA

Coding sequence (CDS) from alignment at scaffold_506:48..3591-

>TCONS_00069701 ID=TCONS_00069701|Name=TCONS_00069701|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at scaffold_506:48..3591- (Clytia hemisphaerica)
GATCGGTGTAGGACTGGGCGTGGCACTTGTTATATGCTTATTTATTGTTT
ATTGTTATTGGAAGAAAAGAAAAGACAGAAGAAAACGCGTTGGCGATTTA
CCGAATTCCGAAACGGAAGAAAAACGGAGGAAAAAGAAAAGAACAAAAAA
ATGAGTGTAGGCCTTCAGAAGAATGTTGCCCGCGAGAAATGGGTTGTTGC
ACCCCGGAAATTGGTAAAAAAGTATGGTCAATCTTGGTTTGAAATGTCCA
AAGAGATCGATGCTACCACACACATTAGATGGCGGAGTCACTTATCGTTT
GAAATTACACGAACTCACTATCGAATGAGGGCGCCTTCTTATTTCTATTT
CTTCACCTTCCTTGCTCATATTCAGGATCGGTGTAGGACTGGGCGTGGCA
CTTGTTATATGCTTATTTATTGTTTATTGTTATTGGAAGAAAAGAAAAGA
CAGAAGAAAACGCGTTGGCGATTTACCGAATTCCGAAACGGAAGAAAAAC
GGAGGAAAAAGAAAAGAACAAAAAAATGAGTGTAGGCCTTCAGAAGAATG
TTGCCCGCGAGAAATGGGTTGTTGCACCCCGGAAATTGGTAAAAAAGTAT
GGTCAATCTTGGTTTGAAATGTCCAAAGAGATCGATGCTACCACACACAT
TAGATGGCGGAGTCACTTATCGTTTGAAATTACACGAACTCACTATCGAA
TGAGGGCGCCTTCTTATTTCTATTTCTTCACCTTCCTTGCTCATATTCAG
GATCGGTGTAGGACTGGGCGTGGCACTTGTTATATGCTTATTTATTGTTT
ATTGTTATTGGAAGAAAAGAAAAGACAGAAGAAAACGCGTTGGCGATTTA
CCGAATTCCGAAACGGAAGAAAAACGGAGGAAAAAGAAAAGAACAAAAAA
ATGAGTGTAGGCCTTCAGAAGAATGTTGCCCGCGAGAAATGGGTTGTTGC
ACCCCGGAAATTGGTAAAAAAGTATGGTCAATCTTGGTTTGAAATGTCCA
AAGAGATCGATGCTACCACACACATTAGATGGCGGAGTCACTTATCGTTT
GAAATTACACGAACTCACTATCGAATGAGGGCGCCTTCTTATTTCTATTT
CTTCACCTTCCTTGCTCATATTCAGGATCGGTGTAGGACTGGGCGTGGCA
CTTGTTATATGCTTATTTATTGTTTATTGTTATTGGAAGAAAAGAAAAGA
CAGAAGAAAACGCGTTGGCGATTTACCGAATTCCGAAACGGAAGAAAAAC
GGAGGAAAAAGAAAAGAACAAAAAAATGAGTGTAGGCCTTCAGAAGAATG
TTGCCCGCGAGAAATGGGTTGTTGCACCCCGGAAATTGGTAAAAAAGTAT
GGTCAATCTTGGTTTGAAATGTCCAAAGAGATCGATGCTACCACACACAT
TAGATGGCGGAGTCACTTATCGTTTGAAATTACACGAACTCACTATCGAA
TGAGGGCGCCTTCTTATTTCTATTTCTTCACCTTCCTTGCTCATATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043403XLOC_043403Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069701-exon-scaffold_506-1575043694:3517..3591TCONS_00069701-exon-scaffold_506-1575043694:3517..3591Clytia hemisphaericaexon
TCONS_00069701-exon-scaffold_506-1575043694:2320..2417TCONS_00069701-exon-scaffold_506-1575043694:2320..2417Clytia hemisphaericaexon
TCONS_00069701-exon-scaffold_506-1575043694:1229..1300TCONS_00069701-exon-scaffold_506-1575043694:1229..1300Clytia hemisphaericaexon
TCONS_00069701-exon-scaffold_506-1575043694:48..351TCONS_00069701-exon-scaffold_506-1575043694:48..351Clytia hemisphaericaexon
TCONS_00069701-exon-scaffold_506-1510915933:3517..3591TCONS_00069701-exon-scaffold_506-1510915933:3517..3591Clytia hemisphaericaexon
TCONS_00069701-exon-scaffold_506-1510915933:2320..2417TCONS_00069701-exon-scaffold_506-1510915933:2320..2417Clytia hemisphaericaexon
TCONS_00069701-exon-scaffold_506-1510915933:1229..1300TCONS_00069701-exon-scaffold_506-1510915933:1229..1300Clytia hemisphaericaexon
TCONS_00069701-exon-scaffold_506-1510915933:48..351TCONS_00069701-exon-scaffold_506-1510915933:48..351Clytia hemisphaericaexon
TCONS_00069701-exon-scaffold_506-1491911889:3517..3591TCONS_00069701-exon-scaffold_506-1491911889:3517..3591Clytia hemisphaericaexon
TCONS_00069701-exon-scaffold_506-1491911889:2320..2417TCONS_00069701-exon-scaffold_506-1491911889:2320..2417Clytia hemisphaericaexon
TCONS_00069701-exon-scaffold_506-1491911889:1229..1300TCONS_00069701-exon-scaffold_506-1491911889:1229..1300Clytia hemisphaericaexon
TCONS_00069701-exon-scaffold_506-1491911889:48..351TCONS_00069701-exon-scaffold_506-1491911889:48..351Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069701-proteinTCONS_00069701-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:48..3591 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.138988	0	0.0720699	0	0	0	0.562017	2.55122	0.939633	1.91687	1.18103	2.0339	2.93683	4.36925	8.79876	0.143079	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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