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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069740 ID=TCONS_00069740|Name=TCONS_00069740|organism=Clytia hemisphaerica|type=transcript|length=2069bp
CTATTACATGATATCATTAGAGTTAAAGGAGCGATAGGTTGACTTTACTG
TTGGAAGATTTTTCTTAAAGTACAATGCCTTTTAGCCTTAGAAATGAAAG
GTGCTTGGGCAAACTGTTTCTCTGTCTATTTGGTTTGCTACTACCTTTTC
TTCTTGTGCTTGCTGTGATATTTACTGGTTTGGGTATTGAAGGAACTAAA
ACTGCGGCAGTAGTATACAATGGTACAAATACATCGTCAATGTGGAACAT
TGTATCAGGAAATGCTTCAGAAAATGACTCATTGAACACCTCTAGACCAC
TAAACGATTCAGAAGATTCAAATTCACAAATGGACGAACAgacttcaatt
ttttatatgtATTGTTTCATTATCTCTGTTTTTCTAGTGACGTGTATTTG
TGTACATACATATGTCTTATGTAGATACATTTCAAAGAGATATGTATCTC
AAGAAACCAAACAAATGATACTACCCTGCATTCAAAGAAAACCTTTAGTA
AGTGTAATGAAAGAACTTTACCATTGCATTGTTGAAAGCGTTGATCGATT
GGTTATTGAAAACGATACAATAGATCTACTACGTAAATGTTTGGATCTTG
ATGCTAACTTCTCAGACAGCATCGCGATGTTTACGGTTGGCAGTGGGGCT
GAACAATTTAGCTTACCTTACTACCCTGGACTTGGCATATTTCAACATGG
AAATATTTCAGATTTTGACTTAATGATGAGTCCGAAGGAAGAATCAGCTG
CTTTTGAATCTGATCAAGGTACAAAATATCGAGTTGTAAGTTTTGCCGCA
AATCTTCCGAAAGGGTTTATTCACCTTTATGAAGGAAACGAAATACTTTC
CGCAAAAAGCAAGAGGGAGAATTTAGAAGGTATTGTTTTGAACATTCCTT
CAAtaaattttaacaagatttACTGGTTAAGTTACCTTTGCAATTGTGCT
TCGGTGTTATTGTGTTATTACACAACAGACAATTGCTgttcaaatgatca
aatcacGGTCAAAATTAATGGCCCAGCAATAACAGTCTTTAGTCGAGCGT
TCAGCGCGTACAACCTTTATTATGATATCACACTTTCTATCCATTGTATG
GATTGGCCAAGCCAGGTTTCGGATTGGGAACATCGACCTAAGAAATGGCC
CAGTAACGAAGACGTGAAAAGGATTATGGCATATGGTTGTCATCTCGTTC
CAAAATCTCCTGAAAATGGCGATGAAAAAGCGTGGAGAATTTCGTTCTCT
AAAAACGAAGTTGAACTTTCCAAGCTGATTCCTCCTGTCGCCAGGATGTG
TTTTATAACAATCAAATCTATACGTAAAAATGATTATTATTTATCCAAAA
TATCAAGTTATTCACTGAAAACCATATTTTTGAATACGTTAGAAAAGACA
GCTCCAAATCAATGGTTCTCCTGGGACGATGAAAATATTTCTACATGTTT
TGATTTGTTATTGAACGAAGTTATAAGAGCATTTGAGACAAAACAGTGTC
AACATTTCTGGATTTCAGACATCAATTTATTGACATGTGATGGTTCTACT
GGTATGTTTTCAAAGAAAGACGACACATTCTGTGCAAAGGTTTTTCCACA
TTCCCCAAAATCAAATGATTATTATATTGAGCAAATTTTGAAAGTGTTAC
GACGTGTCAAGGAGAACCCACACTTATACGTTCAACCTTTCCCGAAGAAA
TTCCTGAAACGTTTTCCGAAGATTATTGAAACTGAAAATCAAGATAATGA
CTTTATTAGTAGTGAGTCAGTCGAATTGATAAATGTAGTATAATTTCTTC
CTCGCTCCCATTAAAAATTCCTACAATAGGTAGGACCTCGACAAACTTTT
TCTGgtcaaaacaattcgcaaagaaaccattggaaaattattttgattct
ttaaagTGACGGTGGACGAAACAAAACCAgtttcaccccctggaaatttt
agaataactttttaccacctggaaaaatgagaaaaaataatactctttta
gaccccctggaaattcttctcgagTTACCCCTCTGGAAAAGTTCCTTCAA
TCCCCCCTCCTCTGTATTG Run BLAST on NCBI protein sequence of TCONS_00069740-protein >TCONS_00069740-protein ID=TCONS_00069740-protein|Name=TCONS_00069740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=572bp
MPFSLRNERCLGKLFLCLFGLLLPFLLVLAVIFTGLGIEGTKTAAVVYNG
TNTSSMWNIVSGNASENDSLNTSRPLNDSEDSNSQMDEQTSIFYMYCFII
SVFLVTCICVHTYVLCRYISKRYVSQETKQMILPCIQRKPLVSVMKELYH
CIVESVDRLVIENDTIDLLRKCLDLDANFSDSIAMFTVGSGAEQFSLPYY
PGLGIFQHGNISDFDLMMSPKEESAAFESDQGTKYRVVSFAANLPKGFIH
LYEGNEILSAKSKRENLEGIVLNIPSINFNKIYWLSYLCNCASVLLCYYT
TDNCCSNDQITVKINGPAITVFSRAFSAYNLYYDITLSIHCMDWPSQVSD
WEHRPKKWPSNEDVKRIMAYGCHLVPKSPENGDEKAWRISFSKNEVELSK
LIPPVARMCFITIKSIRKNDYYLSKISSYSLKTIFLNTLEKTAPNQWFSW
DDENISTCFDLLLNEVIRAFETKQCQHFWISDINLLTCDGSTGMFSKKDD
TFCAKVFPHSPKSNDYYIEQILKVLRRVKENPHLYVQPFPKKFLKRFPKI
IETENQDNDFISSESVELINVV Run BLAST on NCBI transcript from alignment at scaffold_506:156881..158949 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069740 ID=TCONS_00069740|Name=TCONS_00069740|organism=Clytia hemisphaerica|type=transcript|length=2069bp|location=Sequence derived from alignment at scaffold_506:156881..158949 (Clytia hemisphaerica)
CAATACAGAGGAGGGGGGATTGAAGGAACTTTTCCAGAGGGGTAActcga
gaagaatttccagggggtctaaaagagtattattttttctcatttttcca
ggtggtaaaaagttattctaaaatttccagggggtgaaacTGGTTTTGTT
TCGTCCACCGTCActttaaagaatcaaaataattttccaatggtttcttt
gcgaattgttttgacCAGAAAAAGTTTGTCGAGGTCCTACCTATTGTAGG
AATTTTTAATGGGAGCGAGGAAGAAATTATACTACATTTATCAATTCGAC
TGACTCACTACTAATAAAGTCATTATCTTGATTTTCAGTTTCAATAATCT
TCGGAAAACGTTTCAGGAATTTCTTCGGGAAAGGTTGAACGTATAAGTGT
GGGTTCTCCTTGACACGTCGTAACACTTTCAAAATTTGCTCAATATAATA
ATCATTTGATTTTGGGGAATGTGGAAAAACCTTTGCACAGAATGTGTCGT
CTTTCTTTGAAAACATACCAGTAGAACCATCACATGTCAATAAATTGATG
TCTGAAATCCAGAAATGTTGACACTGTTTTGTCTCAAATGCTCTTATAAC
TTCGTTCAATAACAAATCAAAACATGTAGAAATATTTTCATCGTCCCAGG
AGAACCATTGATTTGGAGCTGTCTTTTCTAACGTATTCAAAAATATGGTT
TTCAGTGAATAACTTGATATTTTGGATAAATAATAATCATTTTTACGTAT
AGATTTGATTGTTATAAAACACATCCTGGCGACAGGAGGAATCAGCTTGG
AAAGTTCAACTTCGTTTTTAGAGAACGAAATTCTCCACGCTTTTTCATCG
CCATTTTCAGGAGATTTTGGAACGAGATGACAACCATATGCCATAATCCT
TTTCACGTCTTCGTTACTGGGCCATTTCTTAGGTCGATGTTCCCAATCCG
AAACCTGGCTTGGCCAATCCATACAATGGATAGAAAGTGTGATATCATAA
TAAAGGTTGTACGCGCTGAACGCTCGACTAAAGACTGTTATTGCTGGGCC
ATTAATTTTGACCgtgatttgatcatttgaacAGCAATTGTCTGTTGTGT
AATAACACAATAACACCGAAGCACAATTGCAAAGGTAACTTAACCAGTaa
atcttgttaaaatttaTTGAAGGAATGTTCAAAACAATACCTTCTAAATT
CTCCCTCTTGCTTTTTGCGGAAAGTATTTCGTTTCCTTCATAAAGGTGAA
TAAACCCTTTCGGAAGATTTGCGGCAAAACTTACAACTCGATATTTTGTA
CCTTGATCAGATTCAAAAGCAGCTGATTCTTCCTTCGGACTCATCATTAA
GTCAAAATCTGAAATATTTCCATGTTGAAATATGCCAAGTCCAGGGTAGT
AAGGTAAGCTAAATTGTTCAGCCCCACTGCCAACCGTAAACATCGCGATG
CTGTCTGAGAAGTTAGCATCAAGATCCAAACATTTACGTAGTAGATCTAT
TGTATCGTTTTCAATAACCAATCGATCAACGCTTTCAACAATGCAATGGT
AAAGTTCTTTCATTACACTTACTAAAGGTTTTCTTTGAATGCAGGGTAGT
ATCATTTGTTTGGTTTCTTGAGATACATATCTCTTTGAAATGTATCTACA
TAAGACATATGTATGTACACAAATACACGTCACTAGAAAAACAGAGATAA
TGAAACAATacatataaaaaattgaagtcTGTTCGTCCATTTGTGAATTT
GAATCTTCTGAATCGTTTAGTGGTCTAGAGGTGTTCAATGAGTCATTTTC
TGAAGCATTTCCTGATACAATGTTCCACATTGACGATGTATTTGTACCAT
TGTATACTACTGCCGCAGTTTTAGTTCCTTCAATACCCAAACCAGTAAAT
ATCACAGCAAGCACAAGAAGAAAAGGTAGTAGCAAACCAAATAGACAGAG
AAACAGTTTGCCCAAGCACCTTTCATTTCTAAGGCTAAAAGGCATTGTAC
TTTAAGAAAAATCTTCCAACAGTAAAGTCAACCTATCGCTCCTTTAACTC
TAATGATATCATGTAATAG Coding sequence (CDS) from alignment at scaffold_506:156881..158949 >TCONS_00069740 ID=TCONS_00069740|Name=TCONS_00069740|organism=Clytia hemisphaerica|type=CDS|length=1719bp|location=Sequence derived from alignment at scaffold_506:156881..158949 (Clytia hemisphaerica)
TTATACTACATTTATCAATTCGACTGACTCACTACTAATAAAGTCATTAT
CTTGATTTTCAGTTTCAATAATCTTCGGAAAACGTTTCAGGAATTTCTTC
GGGAAAGGTTGAACGTATAAGTGTGGGTTCTCCTTGACACGTCGTAACAC
TTTCAAAATTTGCTCAATATAATAATCATTTGATTTTGGGGAATGTGGAA
AAACCTTTGCACAGAATGTGTCGTCTTTCTTTGAAAACATACCAGTAGAA
CCATCACATGTCAATAAATTGATGTCTGAAATCCAGAAATGTTGACACTG
TTTTGTCTCAAATGCTCTTATAACTTCGTTCAATAACAAATCAAAACATG
TAGAAATATTTTCATCGTCCCAGGAGAACCATTGATTTGGAGCTGTCTTT
TCTAACGTATTCAAAAATATGGTTTTCAGTGAATAACTTGATATTTTGGA
TAAATAATAATCATTTTTACGTATAGATTTGATTGTTATAAAACACATCC
TGGCGACAGGAGGAATCAGCTTGGAAAGTTCAACTTCGTTTTTAGAGAAC
GAAATTCTCCACGCTTTTTCATCGCCATTTTCAGGAGATTTTGGAACGAG
ATGACAACCATATGCCATAATCCTTTTCACGTCTTCGTTACTGGGCCATT
TCTTAGGTCGATGTTCCCAATCCGAAACCTGGCTTGGCCAATCCATACAA
TGGATAGAAAGTGTGATATCATAATAAAGGTTGTACGCGCTGAACGCTCG
ACTAAAGACTGTTATTGCTGGGCCATTAATTTTGACCgtgatttgatcat
ttgaacAGCAATTGTCTGTTGTGTAATAACACAATAACACCGAAGCACAA
TTGCAAAGGTAACTTAACCAGTaaatcttgttaaaatttaTTGAAGGAAT
GTTCAAAACAATACCTTCTAAATTCTCCCTCTTGCTTTTTGCGGAAAGTA
TTTCGTTTCCTTCATAAAGGTGAATAAACCCTTTCGGAAGATTTGCGGCA
AAACTTACAACTCGATATTTTGTACCTTGATCAGATTCAAAAGCAGCTGA
TTCTTCCTTCGGACTCATCATTAAGTCAAAATCTGAAATATTTCCATGTT
GAAATATGCCAAGTCCAGGGTAGTAAGGTAAGCTAAATTGTTCAGCCCCA
CTGCCAACCGTAAACATCGCGATGCTGTCTGAGAAGTTAGCATCAAGATC
CAAACATTTACGTAGTAGATCTATTGTATCGTTTTCAATAACCAATCGAT
CAACGCTTTCAACAATGCAATGGTAAAGTTCTTTCATTACACTTACTAAA
GGTTTTCTTTGAATGCAGGGTAGTATCATTTGTTTGGTTTCTTGAGATAC
ATATCTCTTTGAAATGTATCTACATAAGACATATGTATGTACACAAATAC
ACGTCACTAGAAAAACAGAGATAATGAAACAATacatataaaaaattgaa
gtcTGTTCGTCCATTTGTGAATTTGAATCTTCTGAATCGTTTAGTGGTCT
AGAGGTGTTCAATGAGTCATTTTCTGAAGCATTTCCTGATACAATGTTCC
ACATTGACGATGTATTTGTACCATTGTATACTACTGCCGCAGTTTTAGTT
CCTTCAATACCCAAACCAGTAAATATCACAGCAAGCACAAGAAGAAAAGG
TAGTAGCAAACCAAATAGACAGAGAAACAGTTTGCCCAAGCACCTTTCAT
TTCTAAGGCTAAAAGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069740-exon-scaffold_506-1491911889:156881..158949 | TCONS_00069740-exon-scaffold_506-1491911889:156881..158949 | Clytia hemisphaerica | exon |
| TCONS_00069740-exon-scaffold_506-1510915933:156881..158949 | TCONS_00069740-exon-scaffold_506-1510915933:156881..158949 | Clytia hemisphaerica | exon |
| TCONS_00069740-exon-scaffold_506-1575043694:156881..158949 | TCONS_00069740-exon-scaffold_506-1575043694:156881..158949 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_506 | supercontig | scaffold_506:156881..158949 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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