TCONS_00069751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069751
Unique NameTCONS_00069751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2998

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069751 ID=TCONS_00069751|Name=TCONS_00069751|organism=Clytia hemisphaerica|type=transcript|length=2998bp
TCTCTCCCTACTTGAACTGGCGGGTGCAAGGATAGATGGTGAAAACACTG
TATTTATTCTAGCAAGATGGACAACATGAAGTTCTGAAAGAGATGGtatg
CTGAATATCAGAACGAAGTGTTGGCGAAGAAGAAACACGTGTTGACTTAT
TTCATGCATcgcgaagatgaaaaaagagATTACGATATTAAGgaACTAGA
TTTAGAAGTTGGTGAAGTAAGAAAGCCATCGGAGAAAACGAAGAAAACGA
ATAAcaacaagaagaagaaagagCCTGAAACGCCACAAAAGGAGAAACGC
AGACGAAACGCTAATCCGCTTGGTATTCCAATCCCAACAAATTTGCTAGG
GAAGAGAGGAGCGgaggaaaaaaacaaagagGAGGAAAAAGAGTATGGGC
CGACTGTTACTTATTATTTGGATGGTTTCGCACAGGTCATAGATGTCAAT
GAACGTTTGAAGTTAGTTCTCGATGAAGTTTGTATGGCCGAACCTAAAGC
TTTTCGCGCCCGCTGTAATATAGCAATAACTGACTTAAAGTTGAAGCGAG
TAGCACCACAAACATTAAAAGATGAATTCGAAGCTTGTCGGCAAGTCTTG
CTGACCAGGCTACCAGAGAAAGCAGAATTATTGGAGAATATCCTGACAGA
AACTGCCCGAAGTGCCGACGCTTTCATCGAACAAGTAGAGGACGTAATTG
CATCACATAAAAAGAAGATGCAAGCAGGAGAAGAACAACCACAAGAAACA
CAACAGCCAACAACACCTAGCACAATTGCTACCTCTGCTGCATCCTCGTT
TGGCAGAACGTCACACCATCGGAAAGCCAGTAAACCGTTACGTGTTGTGG
AGGTAGGTAAAGTGAGACGTCCCATCAATCAAGATCCGATCACCGTCGAT
GTCAGTGATGAATTCGATTCTGACGATTCGATGCCTGATACACCACGCCC
ACCGCCAATGTTGGGAAGTCAGCCGCCCACCAAACGCCCACCCGTTACTG
AAACAGACCAACTGAAGATATTTACATGGATTTTGCAGACGCTGCATATA
GATACAGCAGGCGTAATGAGGTCATTACCACAGAAAGACCTAGCTAACTC
CATCAAAGATCAGAACCCATACAATCAAGGAAATACATTCCCAAAATGTC
TCCCCCTGTCGCCTAATTCCTCCACGTTGCGTGGTTTTCGAACTCTTTTG
CTACACCGTAAACGTCTGAGTGAACAAGTCAACAAATCAACCACGCCTAT
CAATAAAGAAGCTCTCCAAGACACACCCATGTACAATGCATTAAGCTCAA
GATTCAAGAGTATGTTCGTATGGCCGGCCTTTCTCGCCACCTTCATGCCG
AGGAGAGCAGAAGAACTCCCATCCAAGAAGATATTGGATCAAACACCAAC
CAAACTTCCGCAGTTCAATTTCAATAAACGTATGAATATTCCAGGGCGTC
GTGTACCGACGTCTCCTCAAACACGAATGCAACACCCGATGTATGGTTCC
GCATCTCCGCAGCGTAATCATAGCNACGTATGAATATTCCAGGGCGTCGT
GTACCGACGTCTCCTCAAACACGAATGCAACACCCGATGTATGGTTCCGC
CTCTCCGCAGCGTAATCATAGTCAGTTTCCAGGACAACCACCCTATCCAC
CTGTGCACATGCACCAAATGGCTTACACTCGTCAACGTCCAGGGCAAACT
ATTCTTGGCAACCCATCTCCTTTCAATTCCTCTTCATCTACCACCATGCT
GCGTCACACCACAACCAGTGGCTACGGTCATTCAAGAGCTGAAATAAATC
TTTCGCCGCAACGGTTTCCGATAGCCCCTTCATACCCTTACAGAGCACCA
TACGCACCGGTGGGTAACCCTCATCAGCGATACATGAGCCAAATGGTACC
TTTCCCAATGAGGGCTCCATCTGGTCACGGGACGATGCAACGTCCTCCGA
CATCGAACACAAGTACTCAGCAACGTGAAACAACTTCTACACAAATACCT
CAACAAGACGAGACTTCCACCAGTAATCCATCAGATAAAGGTAAAACACC
TTTGGGTCGAGCAACACGTAAGAGATCGACCAATAATGAAACTACTCAAC
CCTCTGCTACTTCTAAACCTAAGGCAAAAGTCAAACATACTACTAAAATA
TGGTCACAACGCTCAGCTGAACTTTCAGACGAAAAACTGTCCAAACTTGT
TGATGACTATTTAAACGAACGTAAACTCAACACGAAAGTTTTAAAAGTAG
AACCGTCAGAGAAATCAACAGATGCACAGACCTCGACATCGCACCAACCA
AAGACCTCTAAAGATGTGTTTATGCCACGCCACGTGCTCGATCCGCCGGC
TGAGAAACGACAAATGTTAGATAATTCGGTAATTGCGTTAGAGACAGGTA
AGGAGAAGGAtgataaagaaaaagacaaagaagagAGACCTAAGAAAAGG
AGAAAATCTCAATGAACTAATCAGAGAGTGATACATGAAAGTTGCTACAG
ATTTCCCCTTTTTGACACTGACATTTTAAAATACTGAATATAGCGAGTGT
GCTGCTGACATAAATCATCTAAGGACGGGATGTGATACAAAACTGACAAA
ATATCTCTATATATTTTGTATACTGACAAAATTCAGAATTGATTGAAACT
GGTCTCACATTGGATCTAAAGTACTGAAGATACAGCAATTCGATTTGTTA
AGCCTCATTGTACGTTAGGAATGCTTGTGTTGTAAATATGAAATTATTGA
GAACCTATTTTGTTCCGTTTTGAAAGCATGATGGTTCATggagaaatttt
aattttgaaaaaaccttACCCAAATTTTGTAAACGATTTTTATCAAGTTT
GTCtattttttgtataagattttTATTGTGTCTAAATAGATCAAGATAGG
GTAAATATACATatattttgtagattttaaatatgtttatgtattttatt
tcattatGTACAACGAAGTGTTTTGTTTTCAGCAAAAGCAAACTGGCC
Run BLAST on NCBI

transcript from alignment at scaffold_507:78307..84226+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069751 ID=TCONS_00069751|Name=TCONS_00069751|organism=Clytia hemisphaerica|type=transcript|length=5920bp|location=Sequence derived from alignment at scaffold_507:78307..84226+ (Clytia hemisphaerica)
TCTCTCCCTACTTGAACTGGCGGGTGCAAGGATAGATGGTGAAAACACTG
TATTTATTCTAGCAAGATGGACAACATGAAGTTCTGAAAGAGATGGGTAG
GAATCTTCAACTtactcaagcaagaaaaagggTACCCTAAGATTTGCGCT
GCATTTAGAATGGACGGGTTGAATCTAGccctttctttatttttaagcgG
CAGGCTTTTCAAAATCTAGCGAtaggttttactttcaatctggtttttgt
gtgaaaaccacgcgagCATGCGTTTTGGATGGAAAACAattggcttcatt
tcccattcaGGAGTCTCGNCGCCACAAAAGGAGAAACGCAGACGAAACGC
TAATCCGCTTGGTATTCCAATCCCAACAAATTTGCTAGGGAAGAGGGGAG
CGgaggaaaaaaacaaagagGAGGAAAAAGAGTATGGGCCGACTGTTACT
TATTATTTGGATGGTTTCGCACAGGTCATAGATGTCAATGAACGTTTGAA
GTTAGTTCTCGATGAAGTTTGTATGGCCGAACCTAAAGCTTTTCGCGCCC
GCTGTAATGTAAGTGTTCAGAAATAGATCTTCCATGTTGATTTCACCCTT
ACTTATTCGANTTCTCCTTGAAAAATACGTATTACTCTcaccattttctt
tttcagtatgCTGAATATCAGAACGAAGTGTTGGCGAAGAAGAAACACGT
GTTGACTTATTTCATGCATcgcgaagatgaaaaaagagATTACGATATTA
AGGTTTTtatttccttttccttttttgtGAAACATTAAGATGGTTCTTCA
TGGGCAGTCAGCAAAACTATATCGAAATGGTACAAACTACAATCGCGGGA
ATTTTTTCTGCTccttttttatggaatttttatgaattttccaCCGCTTT
TTTGTGCTTCTTTCGGGAAGAATGTGCCAGAAGGAAAAATGTTACCCGTT
GAACTTCATACCTACCCAGTGAATGTTACCTTCCTGACTGATATTCCACC
CCTTTTGAGAAGTTTGCCATCTTCCTGTTTAGCAATACTTGCAGTTTTAG
TGCTGCGCACAGGAGATCGTGCGTTTCTTCGCAAGCAGTTTATTCACGCA
AACTTTAAAGATATAGAGTACAGTACTCATTATGCAACTCAAGCGTAGTA
GACCTTACTTCCAAATTTCATTTGcttcctttttctttattttaggaACT
AGATTTAGAAGTTGGTGAAGTAAGAAAGGTAAAAAAGGTACTTTTCATTG
CTACTTGAAACCCTCTTGGCTAACTATCGAGATAAATCTCGCATACTAAA
ACAGGGGAACTGAAATAACCGGGTTCGTTGAGAGCTATTTCAAAAACTAC
TATAGCCCAGGGGTGAGAAAAGCAAAGTTAATCATCCTCCATTTCGTTTT
TCCATCGAAGCCATCGGAGAAAGCGAAGAAAACGAAcaacaagaagaaga
aagagCCTGAAACGCCACAAAAGGAGAAACGCAGACGAAACGCTAATCCG
CTTGGTATTCCAATCCCAACAAATTTGCTAGGGAAGAGGGGAGCGgagga
aaaaaacaaagagGAGGAAAAAGAGTATGGGCCGACTGTTACTTATTATT
TGGATGGTTTCGCACAGGTCATAGATGTCAATGAACGTTTGAAGTTAGTT
CTCGATGAAGTTTGTATGGCCGAACCTAAAGCTTTTCGCGCCCGCTGTAA
TGTAAGTGTTCAGAAATAGATCTTCCATGTTGATTTCAACCTTACTTATT
CGGTTTGCCCTAGTTTGTCCTGAAAATGTAATGCGAGATTCAGCTTCTTT
TCAGAAAAGTAGGCTAAACTCTCtaatcaaattgttcttatgtaGTGGGT
AAAGCCCTCAACATTTTTTCATTAGTGTTTGTTCTTTTGACGGTTAGCTA
TCACTAACACAGTCCTGTATTTCCATCTGAAACTAAGTGCGAATTTAATC
TTCGTCAatactcaaaatcaaatttaccTCTACAATAGTTGTTCCGACCT
CCTTTCTAGATAGCAATAACTGACTTAAAGTTGAAGCGAGTAGCACCACA
AACATTAAAAGATGAATTCGAAGCTTGTCGGCAAGTCTTGCTGACCAGGC
TACCAGAGAAAGCAGAATTATTGGAGAAGATCCTGACAGAAACTGTCCGA
AGTGCCGACGCTTTCATCGAACAAGTAGAGGACGTCNTTCATTGCTACTT
GAAACCCTCTTGGCTAACTATCGAGATAAATCTCGCATACTAAAACAGGG
GAACTGAAATAACCGGGTTCGTTGAGAGCTATTTCAAAAACTACTATAGC
CCAGGGGTGAGAAAAGCAAAGTTAATCATCCTCCATTTCGTTTTTCCATC
GAAGCCATCGGAGAAAACGAAGAAAACGAATAAcaacaagaagaagaaag
agCCTGAAACGCCACAAAAGGAGAAACGCAGACGAAACGCTAATCCGCTT
GGTATTCCAATCCCAACAAATTTGCTAGGGAAGAGAGGAGCGgaggaaaa
aaacaaagagGAGGAAAAAGAGTATGGGCCGACTGTTACTTATTATTTGG
ATGGTTTCGCACAGGTCATAGATGTCAATGAACGTTTGAAGTTAGTTCTC
GATGAAGTTTGTATGGCCGAACCTAAAGCTTTTCGCGCCCGCTGTAATGT
AAGTGTTCAGAAATAGATCTTCCATGTTGATTTCACCCTTACTTATTCGG
TTTGCCCTAGTTTGTCCTGAAAATGTAATGCGAGATTCAGCTTCTTTTCA
GAAAAGTAGGCTAAACTCTCtaatcaaattgttcttatgtaGTGGGTAAA
GCCCTCAACATTTTTTCATTAGTGTTTGTTCTTTTGACGGTTAGCTATCA
CTAACACAGTCCTGTATTTCCATCTGAAACTAAGTGCGAATTTAATCTTC
GTCAatattcaaaatcaaatttaccTCTACAATAGTTGTTCCGACCTCCT
TTCTAGATAGCAATAACTGACTTAAAGTTGAAGCGAGTAGCACCACAAAC
ATTAAAAGATGAATTCGAAGCTTGTCGGCAAGTCTTGCTGACCAGGCTAC
CAGAGAAAGCAGAATTATTGGAGAATATCCTGACAGAAACTGCCCGAAGT
GCCGACGCTTTCATCGAACAAGTAGAGGACGTAATTGCATCACATGTAAG
TAATGCGATAAGTTCTCTGTGGTAGCTGCAGGTCACCTTTTTACAACATT
TAAACCAATATCAACACCaacctgaatttttttaataaatattctCATTA
AAACTCATAGTTGTTTTAACTGGAGGTGAATGAGAAAATGAACAATCCGA
CAATTCTTTGTTTTCAACCTTCTTAGAAAAAGAAGATGCAAGCAGGAGAA
GAACAACCACAAGAAACACAACAGCCAACAACACCTAGCACAATTGCTAC
CTCTGCTGCATCCTCGTTTGGCAGAACGTCACACCATCGGAAAGCCAGTA
AACCGTTACGTGTTGTGGAGGTAGGTAAAGTGAGACGTCCCATCAATCAA
GATCCGATCACCGTCGATGTCAGTGATGAATTCGATTCTGACGATTCGAT
GCCTGATACACCACGCCCACCGCCAATGTTGGGAAGTCAGCCGCCCACCA
AACGCCCACCCGTTACTGAAACAGACCAACTGAAGATATTTACATGGATT
TTGCAGGTTTGTTTCATGTTGTCGTTTGCACAATAACaggtttttttctg
ttttgaattggattattcttgaaatttgttATCGTTCTGTTATTATTTGA
TTCGATTTCGAAGTTTCTTAACCTGGTACATCGGATGATGAGTGTCTATG
CACGAAACTGGTACTAGTGTCTTATGATTTTTAGGAAGAAATTTGTTCTT
GCTACTGAACACTTAGTTGATTTGATTCTTTAATTTTCATGTTTGATTTG
TTACTTTTATTACcaatattttgtttattcttcATGTGTTTTCACTACGT
TCTTCCTTAGACGCTGCATATAGATACAGCAGGCGTAATGAGGTCATTAC
CACAGAAAGACCTAGCTAACTCCATCAAAGATCAGAACCCATACAATCAA
GGAAATACATTCCCAAAATGTCTCCCCCTGTCGCCTAATTCCTCCACGTT
GCGTGGTTTTCGAACTCTTTTGCTACACCGTAAACGTCTGAGTGAACAAG
TCAACAAATCAACCACGCCTATCAATAAAGAAGCTCTCCAAGACACACCC
ATGTACAATGCATTAAGCTCAAGATTCAAGAGTATGTTCGTATGGCCGGC
CTTTCTCGCCACCTTCATGCCGAGGAGAGCAGAAGAACTCCCATCCAAGA
AGATATTGGATCAAACACCAACCAAACTTCCGCAGTTCAATTTCAATAAA
CGTATGAATATTCCAGGGCGTCGTGTACCGACGTCTCCTCAAACACGAAT
GCAACACCCGATGTATGGTTCCGCATCTCCGCAGCGTAATCATAGCNACG
TATGAATATTCCAGGGCGTCGTGTACCGACGTCTCCTCAAACACGAATGC
AACACCCGATGTATGGTTCCGCCTCTCCGCAGCGTAATCATAGTCAGTTT
CCAGGACAACCACCCTATCCACCTGTGCACATGCACCAAATGGCTTACAC
TCGTCAACGTCCAGGGCAAACTATTCTTGGCAACCCATCTCCTTTCAATT
CCTCTTCATCTACCACCATGCTGCGTCACACCACAACCAGTGGCTACGGT
CATTCAAGAGCTGAAATAAATCTTTCGCCGCAACGGTTTCCGATAGCCCC
TTCATACCCTTACAGAGCACCATACGCACCGGTGGGTAACCCTCATCAGC
GATACATGAGCCAAATGGTACCTTTCCCAATGAGGGCTCCATCTGGTCAC
GGGACGATGCAACGTCCTCCGACATCGAACACAAGTACTCAGCAACGTGA
AACAACTTCTACACAAATACCTCAACAAGACGAGACTTCCACCAGTAATC
CATCAGATAAAGGTAAAACACCTTTGGGTCGAGCAACACGTAAGAGATCG
ACCAATAATGAAACTACTCAACCCTCTGCTACTTCTAAACCTAAGGCAAA
AGTCAAACATACTACTAAAATATGGTCACAACGCTCAGCTGAACTTTCAG
ACGAAAAACTGTCCAAACTTGTTGATGACTATTTAAACGAACGTAAACTC
AACACGAAAGTTTTAAAAGTAGAACCGTCAGAGAAATCAACAGATGCACA
GACCTCGACATCGCACCAACCAAAGACCTCTAAAGATGTGTTTATGCCAC
GCCACGTGCTCGATCCGCCGGCTGAGAAACGACAAATGTTAGATAATTCG
GTAATTGCGTTAGAGACAGGTAAGGAGAAGGAtgataaagaaaaagacaa
agaagagAGACCTAAGAAAAGGAGAAAATCTCAATGAACTAATCAGAGAG
TGATACATGAAAGTTGCTACAGATTTCCCCTTTTTGACACTGACATTTTA
AAATACTGAATATAGCGAGTGTGCTGCTGACATAAATCATCTAAGGACGG
GATGTGATACAAAACTGACAAAATATCTCTATATATTTTGTATACTGACA
AAATTCAGAATTGATTGAAACTGGTCTCACATTGGATCTAAAGTACTGAA
GATACAGCAATTCGATTTGTTAAGCCTCATTGTACGTTAGGAATGCTTGT
GTTGTAAATATGAAATTATTGAGAACCTATTTTGTTCCGTTTTGAAAGCA
TGATGGTTCATggagaaattttaattttgaaaaaaccttACCCAAATTTT
GTAAACGATTTTTATCAAGTTTGTCtattttttgtataagattttTATTG
TGTCTAAATAGATCAAGATAGGGTAAATATACATatattttgtagatttt
aaatatgtttatgtattttatttcattatGTACAACGAAGTGTTTTGTTT
TCAGCAAAAGCAAACTGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043433XLOC_043433Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069751-exon-scaffold_507-1491911889:78307..78402TCONS_00069751-exon-scaffold_507-1491911889:78307..78402Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1510915933:78307..78402TCONS_00069751-exon-scaffold_507-1510915933:78307..78402Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1575043694:78307..78402TCONS_00069751-exon-scaffold_507-1575043694:78307..78402Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1491911889:78963..79058TCONS_00069751-exon-scaffold_507-1491911889:78963..79058Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1510915933:78963..79058TCONS_00069751-exon-scaffold_507-1510915933:78963..79058Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1575043694:78963..79058TCONS_00069751-exon-scaffold_507-1575043694:78963..79058Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1491911889:79502..79534TCONS_00069751-exon-scaffold_507-1491911889:79502..79534Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1510915933:79502..79534TCONS_00069751-exon-scaffold_507-1510915933:79502..79534Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1575043694:79502..79534TCONS_00069751-exon-scaffold_507-1575043694:79502..79534Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1491911889:80661..80954TCONS_00069751-exon-scaffold_507-1491911889:80661..80954Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1510915933:80661..80954TCONS_00069751-exon-scaffold_507-1510915933:80661..80954Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1575043694:80661..80954TCONS_00069751-exon-scaffold_507-1575043694:80661..80954Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1491911889:81263..81451TCONS_00069751-exon-scaffold_507-1491911889:81263..81451Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1510915933:81263..81451TCONS_00069751-exon-scaffold_507-1510915933:81263..81451Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1575043694:81263..81451TCONS_00069751-exon-scaffold_507-1575043694:81263..81451Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1491911889:81633..81962TCONS_00069751-exon-scaffold_507-1491911889:81633..81962Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1510915933:81633..81962TCONS_00069751-exon-scaffold_507-1510915933:81633..81962Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1575043694:81633..81962TCONS_00069751-exon-scaffold_507-1575043694:81633..81962Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1491911889:82267..84226TCONS_00069751-exon-scaffold_507-1491911889:82267..84226Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1510915933:82267..84226TCONS_00069751-exon-scaffold_507-1510915933:82267..84226Clytia hemisphaericaexon
TCONS_00069751-exon-scaffold_507-1575043694:82267..84226TCONS_00069751-exon-scaffold_507-1575043694:82267..84226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_507supercontigscaffold_507:78307..84226 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.189504	0	0.600594	0	0	0	0.193041	0.190462	0	0	0	0	0	0	0	0	0	0	0	0	0	0.00786453	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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