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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069753 ID=TCONS_00069753|Name=TCONS_00069753|organism=Clytia hemisphaerica|type=transcript|length=2783bp
aaaccacgcgagCATGCGTTTTGGATGGAAAACAattggcttcatttccc
attcaGGAGTCTCGNCGCCACAAAAGGAGAAACGCAGACGAAACGCTAAT
CCGCTTGGTATTCCAATCCCAACAAATTTGCTAGGGAAGAGGGGAGCGga
ggaaaaaaacaaagagGAGGAAAAAGAGTATGGGCCGACTGTTACTTATT
ATTTGGATGGTTTCGCACAGGTCATAGATGTCAATGAACGTTTGAAGTTA
GTTCTCGATGAAGTTTGTATGGCCGAACCTAAAGCTTTTCGCGCCCGCTG
TAATATAGCAATAACTGACTTAAAGTTGAAGCGAGTAGCACCACAAACAT
TAAAAGATGAATTCGAAGCTTGTCGGCAAGTCTTGCTGACCAGGCTACCA
GAGAAAGCAGAATTATTGGAGAATATCCTGACAGAAACTGCCCGAAGTGC
CGACGCTTTCATCGAACAAGTAGAGGACGTAATTGCATCACATAAAAAGA
AGATGCAAGCAGGAGAAGAACAACCACAAGAAACACAACAGCCAACAACA
CCTAGCACAATTGCTACCTCTGCTGCATCCTCGTTTGGCAGAACGTCACA
CCATCGGAAAGCCAGTAAACCGTTACGTGTTGTGGAGGTAGGTAAAGTGA
GACGTCCCATCAATCAAGATCCGATCACCGTCGATGTCAGTGATGAATTC
GATTCTGACGATTCGATGCCTGATACACCACGCCCACCGCCAATGTTGGG
AAGTCAGCCGCCCACCAAACGCCCACCCGTTACTGAAACAGACCAACTGA
AGATATTTACATGGATTTTGCAGACGCTGCATATAGATACAGCAGGCGTA
ATGAGGTCATTACCACAGAAAGACCTAGCTAACTCCATCAAAGATCAGAA
CCCATACAATCAAGGAAATACATTCCCAAAATGTCTCCCCCTGTCGCCTA
ATTCCTCCACGTTGCGTGGTTTTCGAACTCTTTTGCTACACCGTAAACGT
CTGAGTGAACAAGTCAACAAATCAACCACGCCTATCAATAAAGAAGCTCT
CCAAGACACACCCATGTACAATGCATTAAGCTCAAGATTCAAGAGTATGT
TCGTATGGCCGGCCTTTCTCGCCACCTTCATGCCGAGGAGAGCAGAAGAA
CTCCCATCCAAGAAGATATTGGATCAAACACCAACCAAACTTCCGCAGTT
CAATTTCAATAAACGTATGAATATTCCAGGGCGTCGTGTACCGACGTCTC
CTCAAACACGAATGCAACACCCGATGTATGGTTCCGCATCTCCGCAGCGT
AATCATAGCNACGTATGAATATTCCAGGGCGTCGTGTACCGACGTCTCCT
CAAACACGAATGCAACACCCGATGTATGGTTCCGCCTCTCCGCAGCGTAA
TCATAGTCAGTTTCCAGGACAACCACCCTATCCACCTGTGCACATGCACC
AAATGGCTTACACTCGTCAACGTCCAGGGCAAACTATTCTTGGCAACCCA
TCTCCTTTCAATTCCTCTTCATCTACCACCATGCTGCGTCACACCACAAC
CAGTGGCTACGGTCATTCAAGAGCTGAAATAAATCTTTCGCCGCAACGGT
TTCCGATAGCCCCTTCATACCCTTACAGAGCACCATACGCACCGGTGGGT
AACCCTCATCAGCGATACATGAGCCAAATGGTACCTTTCCCAATGAGGGC
TCCATCTGGTCACGGGACGATGCAACGTCCTCCGACATCGAACACAAGTA
CTCAGCAACGTGAAACAACTTCTACACAAATACCTCAACAAGACGAGACT
TCCACCAGTAATCCATCAGATAAAGGTAAAACACCTTTGGGTCGAGCAAC
ACGTAAGAGATCGACCAATAATGAAACTACTCAACCCTCTGCTACTTCTA
AACCTAAGGCAAAAGTCAAACATACTACTAAAATATGGTCACAACGCTCA
GCTGAACTTTCAGACGAAAAACTGTCCAAACTTGTTGATGACTATTTAAA
CGAACGTAAACTCAACACGAAAGTTTTAAAAGTAGAACCGTCAGAGAAAT
CAACAGATGCACAGACCTCGACATCGCACCAACCAAAGACCTCTAAAGAT
GTGTTTATGCCACGCCACGTGCTCGATCCGCCGGCTGAGAAACGACAAAT
GTTAGATAATTCGGTAATTGCGTTAGAGACAGGTAAGGAGAAGGAtgata
aagaaaaagacaaagaagagAGACCTAAGAAAAGGAGAAAATCTCAATGA
ACTAATCAGAGAGTGATACATGAAAGTTGCTACAGATTTCCCCTTTTTGA
CACTGACATTTTAAAATACTGAATATAGCGAGTGTGCTGCTGACATAAAT
CATCTAAGGACGGGATGTGATACAAAACTGACAAAATATCTCTATATATT
TTGTATACTGACAAAATTCAGAATTGATTGAAACTGGTCTCACATTGGAT
CTAAAGTACTGAAGATACAGCAATTCGATTTGTTAAGCCTCATTGTACGT
TAGGAATGCTTGTGTTGTAAATATGAAATTATTGAGAACCTATTTTGTTC
CGTTTTGAAAGCATGATGGTTCATggagaaattttaattttgaaaaaacc
ttACCCAAATTTTGTAAACGATTTTTATCAAGTTTGTCtattttttgtat
aagattttTATTGTGTCTAAATAGATCAAGATAGGGTAAATATACATata
ttttgtagattttaaatatgtttatgtattttatttcattatGTACAACG
AAGTGTTTTGTTTTCAGCAAAAGCAAACTGGCC Run BLAST on NCBI transcript from alignment at scaffold_507:78561..84226+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069753 ID=TCONS_00069753|Name=TCONS_00069753|organism=Clytia hemisphaerica|type=transcript|length=5666bp|location=Sequence derived from alignment at scaffold_507:78561..84226+ (Clytia hemisphaerica)
aaaccacgcgagCATGCGTTTTGGATGGAAAACAattggcttcatttccc
attcaGGAGTCTCGNCGCCACAAAAGGAGAAACGCAGACGAAACGCTAAT
CCGCTTGGTATTCCAATCCCAACAAATTTGCTAGGGAAGAGGGGAGCGga
ggaaaaaaacaaagagGAGGAAAAAGAGTATGGGCCGACTGTTACTTATT
ATTTGGATGGTTTCGCACAGGTCATAGATGTCAATGAACGTTTGAAGTTA
GTTCTCGATGAAGTTTGTATGGCCGAACCTAAAGCTTTTCGCGCCCGCTG
TAATGTAAGTGTTCAGAAATAGATCTTCCATGTTGATTTCACCCTTACTT
ATTCGANTTCTCCTTGAAAAATACGTATTACTCTcaccattttctttttc
agtatgCTGAATATCAGAACGAAGTGTTGGCGAAGAAGAAACACGTGTTG
ACTTATTTCATGCATcgcgaagatgaaaaaagagATTACGATATTAAGGT
TTTtatttccttttccttttttgtGAAACATTAAGATGGTTCTTCATGGG
CAGTCAGCAAAACTATATCGAAATGGTACAAACTACAATCGCGGGAATTT
TTTCTGCTccttttttatggaatttttatgaattttccaCCGCTTTTTTG
TGCTTCTTTCGGGAAGAATGTGCCAGAAGGAAAAATGTTACCCGTTGAAC
TTCATACCTACCCAGTGAATGTTACCTTCCTGACTGATATTCCACCCCTT
TTGAGAAGTTTGCCATCTTCCTGTTTAGCAATACTTGCAGTTTTAGTGCT
GCGCACAGGAGATCGTGCGTTTCTTCGCAAGCAGTTTATTCACGCAAACT
TTAAAGATATAGAGTACAGTACTCATTATGCAACTCAAGCGTAGTAGACC
TTACTTCCAAATTTCATTTGcttcctttttctttattttaggaACTAGAT
TTAGAAGTTGGTGAAGTAAGAAAGGTAAAAAAGGTACTTTTCATTGCTAC
TTGAAACCCTCTTGGCTAACTATCGAGATAAATCTCGCATACTAAAACAG
GGGAACTGAAATAACCGGGTTCGTTGAGAGCTATTTCAAAAACTACTATA
GCCCAGGGGTGAGAAAAGCAAAGTTAATCATCCTCCATTTCGTTTTTCCA
TCGAAGCCATCGGAGAAAGCGAAGAAAACGAAcaacaagaagaagaaaga
gCCTGAAACGCCACAAAAGGAGAAACGCAGACGAAACGCTAATCCGCTTG
GTATTCCAATCCCAACAAATTTGCTAGGGAAGAGGGGAGCGgaggaaaaa
aacaaagagGAGGAAAAAGAGTATGGGCCGACTGTTACTTATTATTTGGA
TGGTTTCGCACAGGTCATAGATGTCAATGAACGTTTGAAGTTAGTTCTCG
ATGAAGTTTGTATGGCCGAACCTAAAGCTTTTCGCGCCCGCTGTAATGTA
AGTGTTCAGAAATAGATCTTCCATGTTGATTTCAACCTTACTTATTCGGT
TTGCCCTAGTTTGTCCTGAAAATGTAATGCGAGATTCAGCTTCTTTTCAG
AAAAGTAGGCTAAACTCTCtaatcaaattgttcttatgtaGTGGGTAAAG
CCCTCAACATTTTTTCATTAGTGTTTGTTCTTTTGACGGTTAGCTATCAC
TAACACAGTCCTGTATTTCCATCTGAAACTAAGTGCGAATTTAATCTTCG
TCAatactcaaaatcaaatttaccTCTACAATAGTTGTTCCGACCTCCTT
TCTAGATAGCAATAACTGACTTAAAGTTGAAGCGAGTAGCACCACAAACA
TTAAAAGATGAATTCGAAGCTTGTCGGCAAGTCTTGCTGACCAGGCTACC
AGAGAAAGCAGAATTATTGGAGAAGATCCTGACAGAAACTGTCCGAAGTG
CCGACGCTTTCATCGAACAAGTAGAGGACGTCNTTCATTGCTACTTGAAA
CCCTCTTGGCTAACTATCGAGATAAATCTCGCATACTAAAACAGGGGAAC
TGAAATAACCGGGTTCGTTGAGAGCTATTTCAAAAACTACTATAGCCCAG
GGGTGAGAAAAGCAAAGTTAATCATCCTCCATTTCGTTTTTCCATCGAAG
CCATCGGAGAAAACGAAGAAAACGAATAAcaacaagaagaagaaagagCC
TGAAACGCCACAAAAGGAGAAACGCAGACGAAACGCTAATCCGCTTGGTA
TTCCAATCCCAACAAATTTGCTAGGGAAGAGAGGAGCGgaggaaaaaaac
aaagagGAGGAAAAAGAGTATGGGCCGACTGTTACTTATTATTTGGATGG
TTTCGCACAGGTCATAGATGTCAATGAACGTTTGAAGTTAGTTCTCGATG
AAGTTTGTATGGCCGAACCTAAAGCTTTTCGCGCCCGCTGTAATGTAAGT
GTTCAGAAATAGATCTTCCATGTTGATTTCACCCTTACTTATTCGGTTTG
CCCTAGTTTGTCCTGAAAATGTAATGCGAGATTCAGCTTCTTTTCAGAAA
AGTAGGCTAAACTCTCtaatcaaattgttcttatgtaGTGGGTAAAGCCC
TCAACATTTTTTCATTAGTGTTTGTTCTTTTGACGGTTAGCTATCACTAA
CACAGTCCTGTATTTCCATCTGAAACTAAGTGCGAATTTAATCTTCGTCA
atattcaaaatcaaatttaccTCTACAATAGTTGTTCCGACCTCCTTTCT
AGATAGCAATAACTGACTTAAAGTTGAAGCGAGTAGCACCACAAACATTA
AAAGATGAATTCGAAGCTTGTCGGCAAGTCTTGCTGACCAGGCTACCAGA
GAAAGCAGAATTATTGGAGAATATCCTGACAGAAACTGCCCGAAGTGCCG
ACGCTTTCATCGAACAAGTAGAGGACGTAATTGCATCACATGTAAGTAAT
GCGATAAGTTCTCTGTGGTAGCTGCAGGTCACCTTTTTACAACATTTAAA
CCAATATCAACACCaacctgaatttttttaataaatattctCATTAAAAC
TCATAGTTGTTTTAACTGGAGGTGAATGAGAAAATGAACAATCCGACAAT
TCTTTGTTTTCAACCTTCTTAGAAAAAGAAGATGCAAGCAGGAGAAGAAC
AACCACAAGAAACACAACAGCCAACAACACCTAGCACAATTGCTACCTCT
GCTGCATCCTCGTTTGGCAGAACGTCACACCATCGGAAAGCCAGTAAACC
GTTACGTGTTGTGGAGGTAGGTAAAGTGAGACGTCCCATCAATCAAGATC
CGATCACCGTCGATGTCAGTGATGAATTCGATTCTGACGATTCGATGCCT
GATACACCACGCCCACCGCCAATGTTGGGAAGTCAGCCGCCCACCAAACG
CCCACCCGTTACTGAAACAGACCAACTGAAGATATTTACATGGATTTTGC
AGGTTTGTTTCATGTTGTCGTTTGCACAATAACaggtttttttctgtttt
gaattggattattcttgaaatttgttATCGTTCTGTTATTATTTGATTCG
ATTTCGAAGTTTCTTAACCTGGTACATCGGATGATGAGTGTCTATGCACG
AAACTGGTACTAGTGTCTTATGATTTTTAGGAAGAAATTTGTTCTTGCTA
CTGAACACTTAGTTGATTTGATTCTTTAATTTTCATGTTTGATTTGTTAC
TTTTATTACcaatattttgtttattcttcATGTGTTTTCACTACGTTCTT
CCTTAGACGCTGCATATAGATACAGCAGGCGTAATGAGGTCATTACCACA
GAAAGACCTAGCTAACTCCATCAAAGATCAGAACCCATACAATCAAGGAA
ATACATTCCCAAAATGTCTCCCCCTGTCGCCTAATTCCTCCACGTTGCGT
GGTTTTCGAACTCTTTTGCTACACCGTAAACGTCTGAGTGAACAAGTCAA
CAAATCAACCACGCCTATCAATAAAGAAGCTCTCCAAGACACACCCATGT
ACAATGCATTAAGCTCAAGATTCAAGAGTATGTTCGTATGGCCGGCCTTT
CTCGCCACCTTCATGCCGAGGAGAGCAGAAGAACTCCCATCCAAGAAGAT
ATTGGATCAAACACCAACCAAACTTCCGCAGTTCAATTTCAATAAACGTA
TGAATATTCCAGGGCGTCGTGTACCGACGTCTCCTCAAACACGAATGCAA
CACCCGATGTATGGTTCCGCATCTCCGCAGCGTAATCATAGCNACGTATG
AATATTCCAGGGCGTCGTGTACCGACGTCTCCTCAAACACGAATGCAACA
CCCGATGTATGGTTCCGCCTCTCCGCAGCGTAATCATAGTCAGTTTCCAG
GACAACCACCCTATCCACCTGTGCACATGCACCAAATGGCTTACACTCGT
CAACGTCCAGGGCAAACTATTCTTGGCAACCCATCTCCTTTCAATTCCTC
TTCATCTACCACCATGCTGCGTCACACCACAACCAGTGGCTACGGTCATT
CAAGAGCTGAAATAAATCTTTCGCCGCAACGGTTTCCGATAGCCCCTTCA
TACCCTTACAGAGCACCATACGCACCGGTGGGTAACCCTCATCAGCGATA
CATGAGCCAAATGGTACCTTTCCCAATGAGGGCTCCATCTGGTCACGGGA
CGATGCAACGTCCTCCGACATCGAACACAAGTACTCAGCAACGTGAAACA
ACTTCTACACAAATACCTCAACAAGACGAGACTTCCACCAGTAATCCATC
AGATAAAGGTAAAACACCTTTGGGTCGAGCAACACGTAAGAGATCGACCA
ATAATGAAACTACTCAACCCTCTGCTACTTCTAAACCTAAGGCAAAAGTC
AAACATACTACTAAAATATGGTCACAACGCTCAGCTGAACTTTCAGACGA
AAAACTGTCCAAACTTGTTGATGACTATTTAAACGAACGTAAACTCAACA
CGAAAGTTTTAAAAGTAGAACCGTCAGAGAAATCAACAGATGCACAGACC
TCGACATCGCACCAACCAAAGACCTCTAAAGATGTGTTTATGCCACGCCA
CGTGCTCGATCCGCCGGCTGAGAAACGACAAATGTTAGATAATTCGGTAA
TTGCGTTAGAGACAGGTAAGGAGAAGGAtgataaagaaaaagacaaagaa
gagAGACCTAAGAAAAGGAGAAAATCTCAATGAACTAATCAGAGAGTGAT
ACATGAAAGTTGCTACAGATTTCCCCTTTTTGACACTGACATTTTAAAAT
ACTGAATATAGCGAGTGTGCTGCTGACATAAATCATCTAAGGACGGGATG
TGATACAAAACTGACAAAATATCTCTATATATTTTGTATACTGACAAAAT
TCAGAATTGATTGAAACTGGTCTCACATTGGATCTAAAGTACTGAAGATA
CAGCAATTCGATTTGTTAAGCCTCATTGTACGTTAGGAATGCTTGTGTTG
TAAATATGAAATTATTGAGAACCTATTTTGTTCCGTTTTGAAAGCATGAT
GGTTCATggagaaattttaattttgaaaaaaccttACCCAAATTTTGTAA
ACGATTTTTATCAAGTTTGTCtattttttgtataagattttTATTGTGTC
TAAATAGATCAAGATAGGGTAAATATACATatattttgtagattttaaat
atgtttatgtattttatttcattatGTACAACGAAGTGTTTTGTTTTCAG
CAAAAGCAAACTGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00069753-exon-scaffold_507-1491911889:78561..78864 | TCONS_00069753-exon-scaffold_507-1491911889:78561..78864 | Clytia hemisphaerica | exon |
| TCONS_00069753-exon-scaffold_507-1510915933:78561..78864 | TCONS_00069753-exon-scaffold_507-1510915933:78561..78864 | Clytia hemisphaerica | exon |
| TCONS_00069753-exon-scaffold_507-1575043694:78561..78864 | TCONS_00069753-exon-scaffold_507-1575043694:78561..78864 | Clytia hemisphaerica | exon |
| TCONS_00069753-exon-scaffold_507-1491911889:81263..81451 | TCONS_00069753-exon-scaffold_507-1491911889:81263..81451 | Clytia hemisphaerica | exon |
| TCONS_00069753-exon-scaffold_507-1510915933:81263..81451 | TCONS_00069753-exon-scaffold_507-1510915933:81263..81451 | Clytia hemisphaerica | exon |
| TCONS_00069753-exon-scaffold_507-1575043694:81263..81451 | TCONS_00069753-exon-scaffold_507-1575043694:81263..81451 | Clytia hemisphaerica | exon |
| TCONS_00069753-exon-scaffold_507-1491911889:81633..81962 | TCONS_00069753-exon-scaffold_507-1491911889:81633..81962 | Clytia hemisphaerica | exon |
| TCONS_00069753-exon-scaffold_507-1510915933:81633..81962 | TCONS_00069753-exon-scaffold_507-1510915933:81633..81962 | Clytia hemisphaerica | exon |
| TCONS_00069753-exon-scaffold_507-1575043694:81633..81962 | TCONS_00069753-exon-scaffold_507-1575043694:81633..81962 | Clytia hemisphaerica | exon |
| TCONS_00069753-exon-scaffold_507-1491911889:82267..84226 | TCONS_00069753-exon-scaffold_507-1491911889:82267..84226 | Clytia hemisphaerica | exon |
| TCONS_00069753-exon-scaffold_507-1510915933:82267..84226 | TCONS_00069753-exon-scaffold_507-1510915933:82267..84226 | Clytia hemisphaerica | exon |
| TCONS_00069753-exon-scaffold_507-1575043694:82267..84226 | TCONS_00069753-exon-scaffold_507-1575043694:82267..84226 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_507 | supercontig | scaffold_507:78561..84226 + |
Blast
The following BLAST results are available for this feature:
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