|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069757 ID=TCONS_00069757|Name=TCONS_00069757|organism=Clytia hemisphaerica|type=transcript|length=2269bp
ttgcagtaaataacaattcaaattttctatcaattcagtggatgtcaaaa
agtgtgtcaaaatctagctaaaagcataacacgcactgcacacagagcta
ttcaaaggagtgctcatttcaataggaaaacaatggttgttctcttggga
gaagtgccttctagaggtagttcgttatctattatttttacatcgttgat
ttGACGAATGAAAAATGTAATGAGATGGATAGGGGTTCATTTAACGACCC
GAAACTGCCAGCATATTGTAATTCATGGACTATGATTAGAGATACCATTT
GGTATGCTGTGGAAGTTTTTCTGCTCTATCTACAGCAAAATGGAACCCTG
TCATTACTGGAGATGAATAGTCATTTAGAATCGCTACGTACCATTTGCAC
AAGCGTCAACATTGACGCGATGGCTCTCTTCAAACATAGTATTCAAATGT
TCATGCAAATTGAAGGATTTGTTGACGCTAATAAAATACTCAGAGACGTT
AGATCAAAACTTGACAAAGGTTTTGATGAGACTGAAAAAACGTTAGCTGA
AAATCAGGCTAAATTGAATGCTATTCATTTGAATATGAAAGCGACAAAAG
AAGCTGACGTTGATAAACCATTGAGAATCGATGTCAAATTTGCGTTTCCA
GACGGTGTTGACTTCAGTCTAGATGATGATTGCAAAGAGGCTGATGATAT
TCAGTCTACTTTTGAAAAAGCTATGTGTTTGTACTATAGTGGAGTTCCGC
TCAAAACTTTGATGATTGGGTACCGCATGGAAGATGGTCACCTTTCGAAC
AATTCACCATATACACGCATTGAGTTCGAAATAACATCAAATAAAATGTC
TTTTGATGAATATCAAGACAGACGCTCTGATAAATCTAAAGCTCTTTGGA
GGTATCTAAAAGATGCATTTTTGAACCACCTCCCCGAAGTTACTGCTAAG
TTGTGTTATTGGAAGCATGGATCAATTAAACTTTGTGTATTACTTTGTAA
TCAAAGTTGCCAAACTTTTACCGAGAttcatttgaagaaaatgaattttt
gagcTTGGCAAAATGCTCATGCAAAAGGATTCGAGATGAAGAAGATTCGA
AACAAGCGGATGTCCCATATAATGCTCAAACGACACAAATTACAGTTACC
TTTGAAGTACAAGTGTTGCCAAGCAAAAATAGTTGGCAAATGGAGTTTCT
TGACGTTGACTTTGTACTCTGTTCTTTTCAAATCCTACTCGAAAATATTG
GATTCTTTGGAAATCTGGTGCAGGTAATGTTCTTGATACGAAAAAATTGT
GCTCAAATCCACGCAGTTTTATACTTTATGCTCAGATTATGCTCCTTAAC
TTCACAAGATTCATCGATAGTTTGGACAAAAAGCGTACCCTTCTACCACT
TTTAGTATGGAAGAAACGTTTCGAAATGAGCGTTCTGCATTATGAATTGC
TTACAAAGAACCTACTGGCTGGAGGTGCTCTTAGCGAACTAGAAAAAACA
GTGGTGGAAGATATCTTTCGATTAAGTGACGAACTTGAAGAAATGTTGTT
GAATGGTCCAAATTCTCGTATTTTTGCTTCCATTTATAATGAGTTTGACA
ACTTTATTGAAAAGGTTATGCTCTTTTCAAACAAACTTATGAAAACTCAC
TTTCCTGCTAATATGATTCCTATTAAACAGCAAGCTAAACATGCACAAAT
ACGCCTGGCGAGAAACAAACTTGCAAAAGAAATAAGCCAGGTTGATGATG
ACATCAGTGTACACACTACTACTATTAAAGAACCTGTATCCTCGATTAAC
TCTCAATATGAAAAACAGGAGgatgaatttcaaaaatatgatgATAATGA
GAAACTGCTAAGAGCACTAGgaaaagttttaagtctaattGGTGATGACA
TTAGCGCACACACTAGCACTAATAGACTTGATTTGTCACCATGCTCTCAA
TACGAAAGTCAAGCTGCACAAACTGAACAACAAGGGGTCGAGTCTCTGCC
TCTTCCAGATGCAGATGCCTATAAGGCGTGTATAGCAATAGTTTATCATA
CATTGAAGGTGATCTTTTTCATGCTATAAAGCAGCTTCAAATCCTACAAG
ATCAATAATACAATCAAACACTGTCAACAAATATATAGTATTGAAAATTT
AATTATCTTATATAAATCTTCACATATATATCTTTAtcatatatcttttt
ttttatattccaTGCTGTCCCCTGGGGgagggggcagtcaggcaaattga
ccgacgggtaagtgcggcg Run BLAST on NCBI protein sequence of TCONS_00069757-protein >TCONS_00069757-protein ID=TCONS_00069757-protein|Name=TCONS_00069757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MDRGSFNDPKLPAYCNSWTMIRDTIWYAVEVFLLYLQQNGTLSLLEMNSH
LESLRTICTSVNIDAMALFKHSIQMFMQIEGFVDANKILRDVRSKLDKGF
DETEKTLAENQAKLNAIHLNMKATKEADVDKPLRIDVKFAFPDGVDFSLD
DDCKEADDIQSTFEKAMCLYYSGVPLKTLMIGYRMEDGHLSNNSPYTRIE
FEITSNKMSFDEYQDRRSDKSKALWRYLKDAFLNHLPEVTAKLCYWKHGS
IKLCVLLCNQSCQTFTEIHLKKMNF Run BLAST on NCBI transcript from alignment at scaffold_507:115983..118501+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069757 ID=TCONS_00069757|Name=TCONS_00069757|organism=Clytia hemisphaerica|type=transcript|length=2519bp|location=Sequence derived from alignment at scaffold_507:115983..118501+ (Clytia hemisphaerica)
ttgcagtaaataacaattcaaattttctatcaattcagtggatgtcaaaa
agtgtgtcaaaatctagctaaaagcataacacgcactgcacacagagcta
ttcaaaggagtgctcatttcaataggaaaacaatggttgttctcttggga
gaagtgccttctagaggtagttcgttatctattatttttacatcgttgat
ttGACGAATGAAAAATGTAATGAGATGGATAGGGGTTCATTTAACGACCC
GAAACTGCCAGCATATTGTAATTCATGGACTATGATTAGAGATACCATTT
GGTATGCTGTGGAAGTTTTTCTGCTCTATCTACAGCAAAATGGAACCCTG
TCATTACTGGAGATGAATAGTCATTTAGAATCGCTACGTACCATTTGCAC
AAGCGTCAACATTGACGCGATGGCTCTCTTCAAACATAGTATTCAAATGT
TCATGCAAATTGAAGGATTTGTTGACGCTAATAAAATACTCAGAGACGTT
AGATCAAAACTTGACAAAGGTTTTGATGAGACTGAAAAAACGTTAGCTGA
AAATCAGGCTAAATTGAATGCTATTCATTTGAATATGAAAGCGACAAAAG
AAGCTGACGTTGATAAACCATTGAGAATCGATGTCAAATTTGCGTTTCCA
GACGGTGTTGACTTCAGTCTAGATGATGATTGCAAAGAGGCTGATGATAT
TCAGTCTACTTTTGAAAAAGCTATGTGTTTGTACTATAGTGGAGTTCCGC
TCAAAACTTTGATGATTGGGTACCGCATGGAAGATGGTCACCTTTCGAAC
AATTCACCATATACACGCATTGAGTTCGAAATAACATCAAATAAAATGTC
TTTTGATGAATATCAAGACAGACGCTCTGATAAATCTAAAGCTCTTTGGA
GGTATCTAAAAGATGCATTTTTGAACCACCTCCCCGAAGTTACTGCTAAG
TTGTGTTATTGGAAGCATGGATCAATTAAACTTTGTGTATTACTTTGTAA
TCAAAGTTGCCAAACTTTTACCGAGAttcatttgaagaaaatgaattttt
gagcTTGGCAAAATGCTCATGCAAAAGGATTCGAGATGAAGAAGATTCGA
AACAAGCGGATGTCCCATATAATGCTCAAACGACACAAATTACAGTTACC
TTTGAAGTACAAGTGTTGCCAAGCAAAAATAGTTGGCAAATGGAGTTTCT
TGACGTTGACTTTGTACTCTGTTCTTTTCAAATCCTACTCGAAAATATTG
GATTCTTTGGAAATGtaagtttaaattttaaaaactttttcaatgcttAT
TTCTTGATTCAAAGCTTAAAAATGGTACCACTTATTGTGGATTGAAACAT
TTGAAATACTTTATTTTCTCTCATCAACTTCTAATGAGCACCGCGCCTAA
AAAGAGCGCTGTTTTCTAATAAGCGCCGCCCTTTTGTTTTTTGAATCCAC
CCGATAAGATTATTAGTCTTGAATCGTTGAATAAAtaaagatctgtttct
cctTAATCTTTCAGCTGGTGCAGGTAATGTTCTTGATACGAAAAAATTGT
GCTCAAATCCACGCAGTTTTATACTTTATGCTCAGATTATGCTCCTTAAC
TTCACAAGATTCATCGATAGTTTGGACAAAAAGCGTACCCTTCTACCACT
TTTAGTATGGAAGAAACGTTTCGAAATGAGCGTTCTGCATTATGAATTGC
TTACAAAGAACCTACTGGCTGGAGGTGCTCTTAGCGAACTAGAAAAAACA
GTGGTGGAAGATATCTTTCGATTAAGTGACGAACTTGAAGAAATGTTGTT
GAATGGTCCAAATTCTCGTATTTTTGCTTCCATTTATAATGAGTTTGACA
ACTTTATTGAAAAGGTTATGCTCTTTTCAAACAAACTTATGAAAACTCAC
TTTCCTGCTAATATGATTCCTATTAAACAGCAAGCTAAACATGCACAAAT
ACGCCTGGCGAGAAACAAACTTGCAAAAGAAATAAGCCAGGTTGATGATG
ACATCAGTGTACACACTACTACTATTAAAGAACCTGTATCCTCGATTAAC
TCTCAATATGAAAAACAGGAGgatgaatttcaaaaatatgatgATAATGA
GAAACTGCTAAGAGCACTAGgaaaagttttaagtctaattGGTGATGACA
TTAGCGCACACACTAGCACTAATAGACTTGATTTGTCACCATGCTCTCAA
TACGAAAGTCAAGCTGCACAAACTGAACAACAAGGGGTCGAGTCTCTGCC
TCTTCCAGATGCAGATGCCTATAAGGCGTGTATAGCAATAGTTTATCATA
CATTGAAGGTGATCTTTTTCATGCTATAAAGCAGCTTCAAATCCTACAAG
ATCAATAATACAATCAAACACTGTCAACAAATATATAGTATTGAAAATTT
AATTATCTTATATAAATCTTCACATATATATCTTTAtcatatatcttttt
ttttatattccaTGCTGTCCCCTGGGGgagggggcagtcaggcaaattga
ccgacgggtaagtgcggcg Coding sequence (CDS) from alignment at scaffold_507:115983..118501+ >TCONS_00069757 ID=TCONS_00069757|Name=TCONS_00069757|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_507:115983..118501+ (Clytia hemisphaerica)
ATGGATAGGGGTTCATTTAACGACCCGAAACTGCCAGCATATTGTAATTC
ATGGACTATGATTAGAGATACCATTTGGTATGCTGTGGAAGTTTTTCTGC
TCTATCTACAGCAAAATGGAACCCTGTCATTACTGGAGATGAATAGTCAT
TTAGAATCGCTACGTACCATTTGCACAAGCGTCAACATTGACGCGATGGC
TCTCTTCAAACATAGTATTCAAATGTTCATGCAAATTGAAGGATTTGTTG
ACGCTAATAAAATACTCAGAGACGTTAGATCAAAACTTGACAAAGGTTTT
GATGAGACTGAAAAAACGTTAGCTGAAAATCAGGCTAAATTGAATGCTAT
TCATTTGAATATGAAAGCGACAAAAGAAGCTGACGTTGATAAACCATTGA
GAATCGATGTCAAATTTGCGTTTCCAGACGGTGTTGACTTCAGTCTAGAT
GATGATTGCAAAGAGGCTGATGATATTCAGTCTACTTTTGAAAAAGCTAT
GTGTTTGTACTATAGTGGAGTTCCGCTCAAAACTTTGATGATTGGGTACC
GCATGGAAGATGGTCACCTTTCGAACAATTCACCATATACACGCATTGAG
TTCGAAATAACATCAAATAAAATGTCTTTTGATGAATATCAAGACAGACG
CTCTGATAAATCTAAAGCTCTTTGGAGGTATCTAAAAGATGCATTTTTGA
ACCACCTCCCCGAAGTTACTGCTAAGTTGTGTTATTGGAAGCATGGATCA
ATTAAACTTTGTGTATTACTTTGTAATCAAAGTTGCCAAACTTTTACCGA
GAttcatttgaagaaaatgaatttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069757-exon-scaffold_507-1491911889:115983..117246 | TCONS_00069757-exon-scaffold_507-1491911889:115983..117246 | Clytia hemisphaerica | exon |
| TCONS_00069757-exon-scaffold_507-1510915933:115983..117246 | TCONS_00069757-exon-scaffold_507-1510915933:115983..117246 | Clytia hemisphaerica | exon |
| TCONS_00069757-exon-scaffold_507-1575043694:115983..117246 | TCONS_00069757-exon-scaffold_507-1575043694:115983..117246 | Clytia hemisphaerica | exon |
| TCONS_00069757-exon-scaffold_507-1491911889:117497..118501 | TCONS_00069757-exon-scaffold_507-1491911889:117497..118501 | Clytia hemisphaerica | exon |
| TCONS_00069757-exon-scaffold_507-1510915933:117497..118501 | TCONS_00069757-exon-scaffold_507-1510915933:117497..118501 | Clytia hemisphaerica | exon |
| TCONS_00069757-exon-scaffold_507-1575043694:117497..118501 | TCONS_00069757-exon-scaffold_507-1575043694:117497..118501 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_507 | supercontig | scaffold_507:115983..118501 + |
Blast
The following BLAST results are available for this feature:
|
