TCONS_00069764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069764
Unique NameTCONS_00069764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length901

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069764 ID=TCONS_00069764|Name=TCONS_00069764|organism=Clytia hemisphaerica|type=transcript|length=901bp
TATACTTATAGACCATAACAATTCAAAATGCCGTTTTCTTTTGGCAACAC
GAGCTCTTCTTCAACCTCAGGATTTGGTGGATTTGGAGCTACATCAAAGC
CTTCAACAACAGGTTTTGGAGGATTTGGATCAACCTCCACAGgtGGAGGA
TTCAGTGGTTTTGGTGCAAAAACAACAGCGTCAACAGGATTCTCTTTTGG
AACTCCATCAACTGCAACAAGCACAGGGGGAGGACTCTTTTCAGGATTTG
GTTCAACAACCAAAACAACAGCTTCTACAGGTTTTGGTGGATTCGGCACA
GGAACAACAACTGGTTTTGGAGGATTTGGTGCCAAAACAACAGCTTCCAC
ATTTGGTGGGTTTGGAACAACAACTACATCTGCCTCAGGTAGATTTGGTA
CAACCGGCAGTCTATTTGGTGGGTTGAACAAAACAACAACAGCAAGCACT
GGTTTCTCTCTTTCCAATCCCACCCAAACAGGATGGAATGCTGgtcaaca
acaacagcagcaaGCTCAAGGTTTGGACAATCCATTGGCAAGCATGACCA
GTGCACTGACAATGCCCACCATCTTTGGTGACGAGCGAGATGGCATCATT
GCCAAACTGAACCAATTGCAAGCATTGTGGGGTGAAGGGAAAGCTGTTTA
TTCACACAACGCACAACCTATTCCATTGTCACAAGAAAACCCTTTTTCAC
GATTTAAGACGATAGGTTACAGTTGTTTACCATCTGCGAAAGACAGTGAT
GGTTTCATTTCGTTCGACTTGAAACACAAGGAAGATTACGTGAAAACCAA
CCAACAACAATTTGTCGaatccatcagtaaaatcatgGGCAACAAACCGA
CATTCTCCGTATGTGTTGATGGATTACGCAGTCTTCCTGGTGACAGGTAA
T
Run BLAST on NCBI

protein sequence of TCONS_00069764-protein

>TCONS_00069764-protein ID=TCONS_00069764-protein|Name=TCONS_00069764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MPFSFGNTSSSSTSGFGGFGATSKPSTTGFGGFGSTSTGGGFSGFGAKTT
ASTGFSFGTPSTATSTGGGLFSGFGSTTKTTASTGFGGFGTGTTTGFGGF
GAKTTASTFGGFGTTTTSASGRFGTTGSLFGGLNKTTTASTGFSLSNPTQ
TGWNAGQQQQQQAQGLDNPLASMTSALTMPTIFGDERDGIIAKLNQLQAL
WGEGKAVYSHNAQPIPLSQENPFSRFKTIGYSCLPSAKDSDGFISFDLKH
KEDYVKTNQQQFVESISKIMGNKPTFSVCVDGLRSLPGDR
Run BLAST on NCBI

transcript from alignment at scaffold_507:43385..49996-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069764 ID=TCONS_00069764|Name=TCONS_00069764|organism=Clytia hemisphaerica|type=transcript|length=6612bp|location=Sequence derived from alignment at scaffold_507:43385..49996- (Clytia hemisphaerica)
TATACTTATAGACCATAACAATTCAAAATGCCGTTTTCTTTTGGCAACAC
GAGCTCTTCTTCAACCTCAGGATTTGGTGGATTTGGAGCTACATCAAAGC
CTTCAACAACAGGTTTTGGAGGATTTGGATCAACCTCCACAGGTATGTTC
AGTTTACCTATTTATTTTTTCAGTCGTCATAGAGAGTTTGCCTCTAGTTT
TCTTTTTGTTGTCTCCATAATAGAGAGTCCCCTTCGGGACGTCTTTGAAC
CCAGAAATATGGCGCGCCAAAAGGCTTTTTAATACCAACTTTTTTTTATA
ATACCAACTTTTTTTTATAATACCAACTTTTTTTATAATATCAACTTTTT
TTAATAATNTTTATAATACCAACTTTTTTTTATAATACCAACTTTTTTTA
TAATATCAACTTTTTTTAATAATGCCAACTTTTTTTTATAATACCAACTT
TTTTTATTATAATACCAACTTTTTTTTTTATAGTAGAGTCCCCTGCCCAG
TTGGCGACCGAACGTCTTTGAACCCAGAAAAGTCATACATAAACAAACCT
CTGGAGAATTTCTTTTGGTAGTTATCTGCCTTGACCTATTTCCCGTACTG
TGTAAAAAAGGTTTTAGAAAAAAACGAGTAGAATCCGAAAGATCCAACTT
TGCACGGAAGCACACGAAAAAGCCGGATTTTTCAAAAAAAATAAAAAATG
GCTACCTGTGGACAAAAAATCTTCGTAAGAAAAAACGCTTCAACTCCCAC
GCCAAAAAATACTTGTCCAAAACATTGAGTATGTTAGAAAGCATTTCTGT
AAAAATCAGCTCGATACAGTTTCCTTCGTGTGAAATATTGATAAAAAAGT
TGATGCAATCAGCTTCGAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCAACCGGAAGTCGTTAC
TAGAGCGCAACCAGTCCTGATTACCCATGATTCATTTCGAGTGTGAAATG
GCCTATTTGTTGCCAACCAAAATCCATCAACCGAAATTCGAAGTTTCCAT
GGAGACGATAAAAAGTTGCGCTTGAAATCGAAAGTGCCTTCTAGTCTTTA
CTGAACTCAGCGTCATTGAAATCATCAAAATGCAAAGTTAATCCAAAAGT
AGACTCTAGTCTAGATTACACTAGGCTCGATACGCCAATACGCCAGCCAG
CCATCGAAATGTTAGACTAGAGTATACTTTTAGACCAATTCCCTTCTTGG
GATGGTAATTATTATTAGGACTAAGTTTTGGACGGGTATTTACTGTCAGT
ATTTGGCCTAAAATTGCTGACATGGGGAATAAACTTTTAAATCTGATACA
TAGATCAAAACGCTACCAACAGCTGGAAACAAAACCTTTAACGATCGATT
CACCTATCGACCTATTATTTTAACGCGAAATTTAAGACATTTACTTTCAC
ATGTAAACAAAAAATATTTTCCAGTGAAGAACCGTAAAGGTCCGTCTATA
TGGTGAAAAAAGAAAATTGACTAAGCGAGACCAAAAAAATTTATATCATA
AAAATGAAAGTTAGTGTTATAAAAAAAAAAGTTGATATTATAAAAAAAGT
TGGTATTATAAAAAAAAGTTGCTATTTAAAAAAAATCTGATATTATAAAA
ATGAAAGTTGGTATTATAATAAAAATTTGGTATTATAAAAAAAAGTTGAT
ATTATAAAAATGAAAGTTGCTATTATAAAAAAAAGTTGATATTATAAAAA
TGAAAGTTGGTATTATAAAAGTGAAAGTTGGTATTATAAAAAAAATTTAG
TATTATAAAATAAAGTTGATATTATAAAAAAAAGTTAGTATTAAAAAGCC
CTTTGGCGCGCCATACAGAAAAGTCATACAATAACAAACCTCTGGAGAAT
TTCATTTGGTAGTTATCTGCCTTGACCTATATCCCGTACTATGTAAAAAA
ATTCTAGAAAAGAACGAGTAGAATCCGAAAGATCCAACTTCACTTAAACA
CATGAAATAACCGGATTTTTCGAAAAAAATTAAAAATGGTGTGGACAAAA
AAGCTTTGTAAGAAAAAACGCTTCAACTGCCACTCCAAAAAATACTTGTC
CAAAACAATGAGTACTGTGAAGTCAGGTAACTTGCATCAGTGGAGGCTAA
CATGCATAGCCCTTAAATGACTGACCAATAATCAAAGCTGCAAAATTTCA
AAACAAATGAACTACACAGCTTCGCTCGCAGGGCAGCTCTACTCTACTAT
TTTTGTTTTGATTTAACTTTGTATTTAAAGGACCAGACAGGTCATTCATT
TGAGGGCTATGCATGTTAGCCTCCACTGATACAAGTTACTATCCGACTTC
ACGGTATGTTAGGCGACAATCACAAATATCTTCGTTTCGCGTCGCACGAC
CGACTCTCGAAAAATTGAGGAGAATTGAGTCGGTAAATGTGTCGGACTTT
TTCTTTCTTTCGTTCAAAAACTTTATTATTGCCAATTTTTTGCGAGTGAT
TTCTAGCGCATTTGCGGCATTTTGACTTTGTTTATCATTACATGCGCAGT
TTTTGATTGTCAGAGGTCACAGTGTTCAAAGGTCATAATTGGAAACCACC
CATAACACGTGGTTGTTTTGGGCTGGCTGGCTGGCTGGCAGTTTCATTCA
AGAATACACTCCAAAAATGGATGATAGAGGTAAGAAAACCCGAAAATTTT
TACGACCGACCAACCGACCAACCCACTTTTTAGATGAAGATATTTGTGAT
TGCTGCCTTAGAAAGAAAGCATTTCTATAAAAATCAGCTCAATACAGCTT
CCTTCCTCTGAAATATTGATAAAAAAGTTGATGCAATCAGTTTTGAAATT
AGATGCCCTGTCTGCGACCAACAAAATCGAAAGTAAGAAAAAGAAGACTC
TACATTGTGATCAAAACATTCCAGACACAGAGAAAAAAAGAAGACTTTAA
AATGCGATCAAAACATTCAAGGGACATGCCCGCGGTCTTCAACTTGACAG
TTCTAATGCGAAGTTTAAGGCGCTTTGGTATAGTGGTCATCGACCTTGGT
TAATGTACAGGCGACTGAGGTTCGAATCCCACTTGCAGCAGTTCACTTGG
CAAGTGAATGAACCTTTGCCTGGGTCAACCCATGCCATGTGAGGGGAATT
GGGTAGTCAGTTCAAGGTGCTGACGGGGCACTATAATTGAAAGCGTCTAT
AGTTGCGAAAATGGGTCTCAAAGCCTCCTGCGACTCAACCAAATAGAAAT
AGAGAAGAAAAAAATCTCTTTGACAATAAATTTGTTTTGATAACTCCACC
AAGTTTATTAATCTTACTTCTTTGTTCCTCTTAGAGTGCACACACACTCG
CCTGTGTTCCACTACGGATTTTTCTCATATTTCAATTTAAAAGCTTACTC
GGTGCGAAAGAGAAATTGTGTATTTTTAATACGCCGTTCATTAACTCAAA
TCAAATGTCTTTGGAGGTTCAGTGAAATGGTGGCCAAATTGCCGTCCCAT
GTTTTGTCAGATAGTTCCAAGTATTATAGCTCAAATAATGTGAATACGCT
ACTCTCACCAGGTAGGCGTTCACACCGCAAATGGAACAAATCTTTGCGAC
AAGAAACACGTAAATGTGATCGCACGCATTCGCACAAGCGTCCAAATACA
GATATAAAAAAGTCTGTTTTTCCGTGGAAAATTGTGAGTACTGTTATCGA
CACTCGGTAACTTTGACATGTCAATCAATTGCGCACACTGGAAAAAAGTC
TCTGAATATTTCATTCTTCCCAATAAATGCGAAAATGAAAAACGAAGAAG
CTTTCGTTTTCTGATCGTCTTTTTAATCTGCCATGAAGTGTTATAAAATT
CCTTATAGAAAGACACATTCTTCTCACAGACCTGAGGTGTGCATCTAAGA
ACCGGTTTGATTACAATTCTAATTTGTTATTTAAAAACAAATGATATATA
TTAAGTCTTTTCCACACTTTATTAAGTTTTTCTTTAATTAAGTGAATGGA
GGTCTTATCGTTGCAAGATCTATTTTAGTTAGTAGGCCATTTTTGAAAGG
CAACCTTGAAAGATTTAACTTTATTCCATGAGGCAATTTTATCCAAGGCA
AAGGGAGATGTAAAAATCATTCGATTTCAGATGAAAAAAATGGCACATCA
AAAGAAAATTTGTTGCTGAATAGGGCACCTAATTCATAGCAAAGTCTTAG
GGGTACCTTGTAATCATAGAGAATTGATAAATGGGATTAATTTATGACAC
CACTGGCTATCATTAATGTTGTTTAAATTCGTGATCTCTTTATTATATAT
GAAATGATTAATTATTTTTCAAAGGTGGAGGATTCAGTGGTTTTGGTGCA
AAAACAACAGCGTCAACAGGATTCTCTTTTGGAACTCCATCAACTGCAAC
AAGCACAGGGGGAGGACTCTTTTCAGGATTTGGTTCAACAACCAAAACAA
CAGCTTCTACAGGTTTTGGTGGATTCGGCACAGGAACAACAACTGGTTTT
GGAGGATTTGGTGCCAAAACAACAGCTTCCACATTTGGTGGGTTTGGAAC
AACAACTACATCTGCCTCAGGTAGTAAGTTATTCTCATTATTGTTTGAAT
AAGTTTTCATATTATTTTTTTATGAATGATAATCTGCAATATTCTCTTGA
TAACAAAACCTCAGTTATATGGTAAGTAAATATATTCATCTGGTGGCTGA
GTGTGGAGCCAGGAGAGAGGGAGTCTATCCCCTTTTCTATTTTGCGCTAG
TACAGGGAGATCGAATGCTGAAGTGGAGCGCCACACCTACTCTTAGCTTC
CAGTAACTTACCACCCAAATTGATGAGTTGAGTGAAATCGGTGAGTTGGC
GGTGACCGGGGATCAACCCACAACCCTCAGATTGTTTGGTGAATGCAGGC
CACACAGTCATATTTACACTAGCATATTTTATACCTATGTATAAATTTAC
CTTTTTTCTCGATTTTACTTAAAGCCAGGGATACGAAAAAATAAAAAAAA
CGGCTGAGAAAAGGCTGATCAATTAAAGACATAGAAATCACTTCTTCCTG
TCGTTTCCCAATTGTTTAATCTAAAATATCTTACCATGTAAAATCCTGCT
ATTTGAAAATTTGAAATCTATTTATTTAAAAGTGTAGGTGCAATGTACAT
ACATACTTTTGATAGAAATTTTTATATTAACATATCATTTGATATTAAAT
TTCTCATCGTTCTTTTCAGGATTTGGTACAACCGGCAGTCTATTTGGTGG
TAGGTATCTTTGTGGTCAAATTTGGTCAATTCTCAACAAATTCTGAAGAA
ATTCTGAAGAATTCTCGAAAAACTGTTTCTGTTATAAATCTTATCAGAGT
AAGGTTTCAGTTATTGAAGTTTTCTTTGTGTATATTTTATGGCCTTTGAT
TTTTAGGGTTGAACAAAACAACAACAGCAAGCACTGGTTTCTCTCTTTCC
AATCCCACCCAAACAGGATGGAATGCTGGTACGACACGTAGTTCTTCTTT
GTATTATTTTGTCAAGTAGCAAATGATCATTTTCATGATGTAGTTTTTTC
TCAAGTTTCCAGTTTATAACGTGTCATCCACTTAACATCAGTTTCTGTCA
GTTTTGATGTAAAATCTTATCCTCTCAAAAAATAATTTACTCAGTGGTAA
AAAACGAGATTGTCAACTTGTTTAGGTCAACAACAACAGCAGCAAGCTCA
AGGTTTGGACAATCCATTGGCAAGCATGACCAGTGCACTGACAATGCCCA
CCATCTTTGGTGACGAGCGAGATGGCATCATTGCCAAACTGAACCAATTG
CAAGCATTGTGGGGTGAAGGGAAAGCTGTTTATTCACACAACGCACAACC
TATTCCATTGTCACAAGAAAACCCTTTTTCACGATTTAAGGTACGGCTGT
TCAGTTGATTAATTGCTATTTAGGAACTTTTAATGAATTTTACTTTTCGA
GACACTATTAATATTATTGCTTGGTTTCTGCCAATATAACAAGAGTGAAG
CTTTTGGCTCGATGCTAGTGGGTTTTGTTGTGAATAAGAAAAGTAATAAG
CAGCTCTTTGCATGCTATGGTGATTACAAACACTAAAACGTAATAATATC
CAATCTTTATCACTGACAGACGATAGGTTACAGTTGTTTACCATCTGCGA
AAGACAGTGATGGTTTCATTTCGTTCGACTTGAAACACAAGGAAGATTAC
GTGAAAACCAACCAACAACAATTTGTCGAATCCATCAGTAAAATCATGGG
CAACAAACCGACATTCTCCGTATGTGTTGATGGATTACGCAGTCTTCCTG
GTGACAGGTAAT

Coding sequence (CDS) from alignment at scaffold_507:43385..49996-

>TCONS_00069764 ID=TCONS_00069764|Name=TCONS_00069764|organism=Clytia hemisphaerica|type=CDS|length=5238bp|location=Sequence derived from alignment at scaffold_507:43385..49996- (Clytia hemisphaerica)
ACGATAGGTTACAGTTGTTTACCATCTGCGAAAGACAGTGATGGTTTCAT
TTCGTTCGACTTGAAACACAAGGAAGATTACGTGAAAACCAACCAACAAC
AATTTGTCGAATCCATCAGTAAAATCATGGGCAACAAACCGACATTCTCC
GTATGTGTTGATGGATTACGCAGTCTTCCTGGTGACAGGTAAGTCAACAA
CAACAGCAGCAAGCTCAAGGTTTGGACAATCCATTGGCAAGCATGACCAG
TGCACTGACAATGCCCACCATCTTTGGTGACGAGCGAGATGGCATCATTG
CCAAACTGAACCAATTGCAAGCATTGTGGGGTGAAGGGAAAGCTGTTTAT
TCACACAACGCACAACCTATTCCATTGTCACAAGAAAACCCTTTTTCACG
ATTTAAGGGTTGAACAAAACAACAACAGCAAGCACTGGTTTCTCTCTTTC
CAATCCCACCCAAACAGGATGGAATGCTGGATTTGGTACAACCGGCAGTC
TATTTGGTGGTGGAGGATTCAGTGGTTTTGGTGCAAAAACAACAGCGTCA
ACAGGATTCTCTTTTGGAACTCCATCAACTGCAACAAGCACAGGGGGAGG
ACTCTTTTCAGGATTTGGTTCAACAACCAAAACAACAGCTTCTACAGGTT
TTGGTGGATTCGGCACAGGAACAACAACTGGTTTTGGAGGATTTGGTGCC
AAAACAACAGCTTCCACATTTGGTGGGTTTGGAACAACAACTACATCTGC
CTCAGGTAATGCCGTTTTCTTTTGGCAACACGAGCTCTTCTTCAACCTCA
GGATTTGGTGGATTTGGAGCTACATCAAAGCCTTCAACAACAGGTTTTGG
AGGATTTGGATCAACCTCCACAGACGATAGGTTACAGTTGTTTACCATCT
GCGAAAGACAGTGATGGTTTCATTTCGTTCGACTTGAAACACAAGGAAGA
TTACGTGAAAACCAACCAACAACAATTTGTCGAATCCATCAGTAAAATCA
TGGGCAACAAACCGACATTCTCCGTATGTGTTGATGGATTACGCAGTCTT
CCTGGTGACAGGTAAGTCAACAACAACAGCAGCAAGCTCAAGGTTTGGAC
AATCCATTGGCAAGCATGACCAGTGCACTGACAATGCCCACCATCTTTGG
TGACGAGCGAGATGGCATCATTGCCAAACTGAACCAATTGCAAGCATTGT
GGGGTGAAGGGAAAGCTGTTTATTCACACAACGCACAACCTATTCCATTG
TCACAAGAAAACCCTTTTTCACGATTTAAGGGTTGAACAAAACAACAACA
GCAAGCACTGGTTTCTCTCTTTCCAATCCCACCCAAACAGGATGGAATGC
TGGATTTGGTACAACCGGCAGTCTATTTGGTGGTGGAGGATTCAGTGGTT
TTGGTGCAAAAACAACAGCGTCAACAGGATTCTCTTTTGGAACTCCATCA
ACTGCAACAAGCACAGGGGGAGGACTCTTTTCAGGATTTGGTTCAACAAC
CAAAACAACAGCTTCTACAGGTTTTGGTGGATTCGGCACAGGAACAACAA
CTGGTTTTGGAGGATTTGGTGCCAAAACAACAGCTTCCACATTTGGTGGG
TTTGGAACAACAACTACATCTGCCTCAGGTAATGCCGTTTTCTTTTGGCA
ACACGAGCTCTTCTTCAACCTCAGGATTTGGTGGATTTGGAGCTACATCA
AAGCCTTCAACAACAGGTTTTGGAGGATTTGGATCAACCTCCACAGACGA
TAGGTTACAGTTGTTTACCATCTGCGAAAGACAGTGATGGTTTCATTTCG
TTCGACTTGAAACACAAGGAAGATTACGTGAAAACCAACCAACAACAATT
TGTCGAATCCATCAGTAAAATCATGGGCAACAAACCGACATTCTCCGTAT
GTGTTGATGGATTACGCAGTCTTCCTGGTGACAGGTAAGTCAACAACAAC
AGCAGCAAGCTCAAGGTTTGGACAATCCATTGGCAAGCATGACCAGTGCA
CTGACAATGCCCACCATCTTTGGTGACGAGCGAGATGGCATCATTGCCAA
ACTGAACCAATTGCAAGCATTGTGGGGTGAAGGGAAAGCTGTTTATTCAC
ACAACGCACAACCTATTCCATTGTCACAAGAAAACCCTTTTTCACGATTT
AAGGGTTGAACAAAACAACAACAGCAAGCACTGGTTTCTCTCTTTCCAAT
CCCACCCAAACAGGATGGAATGCTGGATTTGGTACAACCGGCAGTCTATT
TGGTGGTGGAGGATTCAGTGGTTTTGGTGCAAAAACAACAGCGTCAACAG
GATTCTCTTTTGGAACTCCATCAACTGCAACAAGCACAGGGGGAGGACTC
TTTTCAGGATTTGGTTCAACAACCAAAACAACAGCTTCTACAGGTTTTGG
TGGATTCGGCACAGGAACAACAACTGGTTTTGGAGGATTTGGTGCCAAAA
CAACAGCTTCCACATTTGGTGGGTTTGGAACAACAACTACATCTGCCTCA
GGTAATGCCGTTTTCTTTTGGCAACACGAGCTCTTCTTCAACCTCAGGAT
TTGGTGGATTTGGAGCTACATCAAAGCCTTCAACAACAGGTTTTGGAGGA
TTTGGATCAACCTCCACAGACGATAGGTTACAGTTGTTTACCATCTGCGA
AAGACAGTGATGGTTTCATTTCGTTCGACTTGAAACACAAGGAAGATTAC
GTGAAAACCAACCAACAACAATTTGTCGAATCCATCAGTAAAATCATGGG
CAACAAACCGACATTCTCCGTATGTGTTGATGGATTACGCAGTCTTCCTG
GTGACAGGTAAGTCAACAACAACAGCAGCAAGCTCAAGGTTTGGACAATC
CATTGGCAAGCATGACCAGTGCACTGACAATGCCCACCATCTTTGGTGAC
GAGCGAGATGGCATCATTGCCAAACTGAACCAATTGCAAGCATTGTGGGG
TGAAGGGAAAGCTGTTTATTCACACAACGCACAACCTATTCCATTGTCAC
AAGAAAACCCTTTTTCACGATTTAAGGGTTGAACAAAACAACAACAGCAA
GCACTGGTTTCTCTCTTTCCAATCCCACCCAAACAGGATGGAATGCTGGA
TTTGGTACAACCGGCAGTCTATTTGGTGGTGGAGGATTCAGTGGTTTTGG
TGCAAAAACAACAGCGTCAACAGGATTCTCTTTTGGAACTCCATCAACTG
CAACAAGCACAGGGGGAGGACTCTTTTCAGGATTTGGTTCAACAACCAAA
ACAACAGCTTCTACAGGTTTTGGTGGATTCGGCACAGGAACAACAACTGG
TTTTGGAGGATTTGGTGCCAAAACAACAGCTTCCACATTTGGTGGGTTTG
GAACAACAACTACATCTGCCTCAGGTAATGCCGTTTTCTTTTGGCAACAC
GAGCTCTTCTTCAACCTCAGGATTTGGTGGATTTGGAGCTACATCAAAGC
CTTCAACAACAGGTTTTGGAGGATTTGGATCAACCTCCACAGACGATAGG
TTACAGTTGTTTACCATCTGCGAAAGACAGTGATGGTTTCATTTCGTTCG
ACTTGAAACACAAGGAAGATTACGTGAAAACCAACCAACAACAATTTGTC
GAATCCATCAGTAAAATCATGGGCAACAAACCGACATTCTCCGTATGTGT
TGATGGATTACGCAGTCTTCCTGGTGACAGGTAAGTCAACAACAACAGCA
GCAAGCTCAAGGTTTGGACAATCCATTGGCAAGCATGACCAGTGCACTGA
CAATGCCCACCATCTTTGGTGACGAGCGAGATGGCATCATTGCCAAACTG
AACCAATTGCAAGCATTGTGGGGTGAAGGGAAAGCTGTTTATTCACACAA
CGCACAACCTATTCCATTGTCACAAGAAAACCCTTTTTCACGATTTAAGG
GTTGAACAAAACAACAACAGCAAGCACTGGTTTCTCTCTTTCCAATCCCA
CCCAAACAGGATGGAATGCTGGATTTGGTACAACCGGCAGTCTATTTGGT
GGTGGAGGATTCAGTGGTTTTGGTGCAAAAACAACAGCGTCAACAGGATT
CTCTTTTGGAACTCCATCAACTGCAACAAGCACAGGGGGAGGACTCTTTT
CAGGATTTGGTTCAACAACCAAAACAACAGCTTCTACAGGTTTTGGTGGA
TTCGGCACAGGAACAACAACTGGTTTTGGAGGATTTGGTGCCAAAACAAC
AGCTTCCACATTTGGTGGGTTTGGAACAACAACTACATCTGCCTCAGGTA
ATGCCGTTTTCTTTTGGCAACACGAGCTCTTCTTCAACCTCAGGATTTGG
TGGATTTGGAGCTACATCAAAGCCTTCAACAACAGGTTTTGGAGGATTTG
GATCAACCTCCACAGACGATAGGTTACAGTTGTTTACCATCTGCGAAAGA
CAGTGATGGTTTCATTTCGTTCGACTTGAAACACAAGGAAGATTACGTGA
AAACCAACCAACAACAATTTGTCGAATCCATCAGTAAAATCATGGGCAAC
AAACCGACATTCTCCGTATGTGTTGATGGATTACGCAGTCTTCCTGGTGA
CAGGTAAGTCAACAACAACAGCAGCAAGCTCAAGGTTTGGACAATCCATT
GGCAAGCATGACCAGTGCACTGACAATGCCCACCATCTTTGGTGACGAGC
GAGATGGCATCATTGCCAAACTGAACCAATTGCAAGCATTGTGGGGTGAA
GGGAAAGCTGTTTATTCACACAACGCACAACCTATTCCATTGTCACAAGA
AAACCCTTTTTCACGATTTAAGGGTTGAACAAAACAACAACAGCAAGCAC
TGGTTTCTCTCTTTCCAATCCCACCCAAACAGGATGGAATGCTGGATTTG
GTACAACCGGCAGTCTATTTGGTGGTGGAGGATTCAGTGGTTTTGGTGCA
AAAACAACAGCGTCAACAGGATTCTCTTTTGGAACTCCATCAACTGCAAC
AAGCACAGGGGGAGGACTCTTTTCAGGATTTGGTTCAACAACCAAAACAA
CAGCTTCTACAGGTTTTGGTGGATTCGGCACAGGAACAACAACTGGTTTT
GGAGGATTTGGTGCCAAAACAACAGCTTCCACATTTGGTGGGTTTGGAAC
AACAACTACATCTGCCTCAGGTAATGCCGTTTTCTTTTGGCAACACGAGC
TCTTCTTCAACCTCAGGATTTGGTGGATTTGGAGCTACATCAAAGCCTTC
AACAACAGGTTTTGGAGGATTTGGATCAACCTCCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043440XLOC_043440Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069764-proteinTCONS_00069764-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069764-exon-scaffold_507-1575043694:49855..49996TCONS_00069764-exon-scaffold_507-1575043694:49855..49996Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1575043694:45124..45372TCONS_00069764-exon-scaffold_507-1575043694:45124..45372Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1575043694:44448..44477TCONS_00069764-exon-scaffold_507-1575043694:44448..44477Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1575043694:44219..44290TCONS_00069764-exon-scaffold_507-1575043694:44219..44290Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1575043694:43807..44021TCONS_00069764-exon-scaffold_507-1575043694:43807..44021Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1575043694:43385..43577TCONS_00069764-exon-scaffold_507-1575043694:43385..43577Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1510915933:49855..49996TCONS_00069764-exon-scaffold_507-1510915933:49855..49996Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1510915933:45124..45372TCONS_00069764-exon-scaffold_507-1510915933:45124..45372Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1510915933:44448..44477TCONS_00069764-exon-scaffold_507-1510915933:44448..44477Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1510915933:44219..44290TCONS_00069764-exon-scaffold_507-1510915933:44219..44290Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1510915933:43807..44021TCONS_00069764-exon-scaffold_507-1510915933:43807..44021Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1510915933:43385..43577TCONS_00069764-exon-scaffold_507-1510915933:43385..43577Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1491911889:49855..49996TCONS_00069764-exon-scaffold_507-1491911889:49855..49996Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1491911889:45124..45372TCONS_00069764-exon-scaffold_507-1491911889:45124..45372Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1491911889:44448..44477TCONS_00069764-exon-scaffold_507-1491911889:44448..44477Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1491911889:44219..44290TCONS_00069764-exon-scaffold_507-1491911889:44219..44290Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1491911889:43807..44021TCONS_00069764-exon-scaffold_507-1491911889:43807..44021Clytia hemisphaericaexon
TCONS_00069764-exon-scaffold_507-1491911889:43385..43577TCONS_00069764-exon-scaffold_507-1491911889:43385..43577Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_507supercontigscaffold_507:43385..49996 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
79.937	79.8584	108.242	105.461	51.2294	44.3123	27.684	29.8275	27.7453	33.3659	31.1826	32.4182	34.8233	41.4882	29.7024	36.31	37.1625	35.0796	13.3226	13.7646	28.2399	32.0991	46.6823	45.1179	41.1655	38.2816	11.9867	9.92938	24.0347	28.7767
Blast
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BLAST of TCONS_00069764 vs. Swiss-Prot (Human)
Match: NUP54 (Nucleoporin p54 OS=Homo sapiens GN=NUP54 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 8.992e-38
Identity = 61/123 (49.59%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  529 NPLASMTSALTMPTIFGDERDGIIAKLNQLQALWGEGKAVYSHNAQPIPLSQENPFSRFKTIGYSCLPSAKDSDGFISFDLKHKEDYVKTNQQQFVESISKIMGNKPTFSVCVDGLRSLPGDR 897
            N L +  SAL+ PT+ GDERD I+AK NQLQA WG GK  +++N  P+  +QENPF RFK +GYSC+PS KD DG +      KE  +++ QQQ VES+ K++G   T +V V+G ++LP D+
Sbjct:  115 NQLINTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSCMPSNKDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQ 237
The following BLAST results are available for this feature:
BLAST of TCONS_00069764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUP548.992e-3849.59Nucleoporin p54 OS=Homo sapiens GN=NUP54 PE=1 SV=2[more]
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