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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069820 ID=TCONS_00069820|Name=TCONS_00069820|organism=Clytia hemisphaerica|type=transcript|length=1019bp
ctcaaagtatgaggttttgtccaccaattaacatcaaaatatttttcatg
cataataggatgctgacgctgcaagtggatatatattgacaggttttgaa
acAAGAGaactgttttagagatatgaaaatagtgacgtcattttatcaaa
aacacaaagcaggggataaaaatattgaaacatttataaaatataatcct
aTTGAtactattttcatcaattcttgttaccatacccaaggtgatgtaTG
Ggctaaaatgagatatgacatagtgattgtgtaatagctattttcctgtt
agggggCAGTTTAAAGCAAAAGGTGAGATCAATGTTTTTTAATACGTATT
CTTTGTATTAACATACGTAACATgcatataacattgaaaagataattttt
attacatgttTGATTTaggtgtaatatataatacaagtattacaggtccg
tgttatatacacggcataaaacgcgaAAGCACGTGgcagtctaagcttaa
actcctatatcggGATTAGAGACAAAGCTATAACAACTTCTTTTCTCTCT
CTTCAGACACCAACTACGAACGAACAACAAAATCGCTTCACGCGTTGATT
GAAAACGCTACAGAAAATGAGATGATTGAAGTTCATCAGTGTTTCGTCTC
AAGAGACCATCGAGTGTATGACGTAATCTCTGTGAACGACAAATGTTCGC
CGGTTATTAAGAAGTCGTCCTTGTCGACACATCGACACATCAATCAAGAT
GTAGATAGATGCTTAATACTGTAGTTTGTCTTTATTAAAACCATAATCTG
TAATATTAAGTGCGTTTAACGACTttgtcaaaaaaacatttttatcaatg
GAATATCATATGACAATTAAATATCTTTCCGTGGTTGTGACATTGATTGG
ACATGAGCACGTTGTCTTCGCAGTCATTACcatcttaaaatttatttttc
ccattgcggacacaagaacacggagaacacaagattcgGATTTGAATTCT
GAAATTTATCAACTTTGAA Run BLAST on NCBI transcript from alignment at scaffold_509:22552..24167- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069820 ID=TCONS_00069820|Name=TCONS_00069820|organism=Clytia hemisphaerica|type=transcript|length=1616bp|location=Sequence derived from alignment at scaffold_509:22552..24167- (Clytia hemisphaerica)
CTCAAAGTATGAGGTTTTGTCCACCAATTAACATCAAAATATTTTTCATG
CATAATAGGATGCTGACGCTGCAAGTGGATATATATTGACAGGTTTTGAA
ACAAGAGAACTGTTTTAGAGATATGAAAATAGTGACGTCATTTTATCAAA
AACACAAAGCAGGGGATAAAAATATTGAAACATTTATAAAATATAATCCT
ATTGATACTATTTTCATCAATTCTTGTTACCATACCCAAGGTGATGTATG
GGCTAAAATGAGATATGACATAGTGATTGTGTAATAGCTATTTTCCTGTT
AGGGGGCAGTTTAAAGCAAAAGGTGAGATCAATGTTTTTTAATACGTATT
CTTTGTATTAACATACGTAACATGCATATAACATTGAAAAGATAATTTTT
ATTACATGTTTGATTTAGGTGTAATATATAATACAAGTATTACAGGTCCG
TGTTATATACACGGCATAAAACGCGAAAGCACGTGGCAGTCTAAGCTTAA
ACTCCTATATCGGGATTAGAGACAAAGCTATAACAACTTCTTTTCTCTCT
CTTCAGACACCAACTACGAACGAACAACAAAATCGCTTCACGCGTTGATT
GAAAACGCTACAGAAAATGAGATGATTGAAGTTCATCAGTGTTTCGTCTC
AAGAGACCATCGAGTGTATGACGTAATCTCTGTGAACGACAAATGTTCGC
CGGTTATTAAGAAGTCGTCCTTGTCGACACATCGACACATCAATCAAGAT
GTAGATAGATGCTTAATACTGTAGTTTGTCTTTATTAAAACCATAATCTG
TAATATTAAGTGCGTTTAACGACTTTGTCAAAAAAACATTTTTATCAATG
GAATATCATATGACAATTAAATATCTTTCCGTGGTTGTGACGTAAGTTTT
GTAATCGATAAACATCTTCCTCGTAAAAAGTGTCATATTGAAATACCTTT
GAGAATACTAAATCGACTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAGTAG
CGAAAAGGCGTTTTTTAAGGGCAGGCACCATCCCGTTGTTTCACCCCTGC
AGCACCTCAGCTGACATAAACATAAACGTCCACAACGTTTATGTAACGTT
CGATTATAAAGTTAGATATACGGTGTAAAAGCGTTACTTCTTAGTTGCGA
TATATTGCGGGGGAATAAAGCCGGGTTCAGATGAGTTGATTTCAAAGATT
TCGATTAATTTTAGCGAGAATTAATTTTGGCCTAAAATTTAGCCGAATTG
AATTTGCTTCCGGGTGGAATTTGGACTTCGGGATTTTGGGAAACGTCAAT
CTATTTCTATTTTTTTTCCTTTAATGCATTCGTTTCAGATTGATTGGACA
TGAGCACGTTGTCTTCGCAGTCATTACCATCTTAAAATTTATTTTTCCCA
TTGCGGACACAAGAACACGGAGAACACAAGATTCGGATTTGAATTCTGAA
ATTTATCAACTTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069820-exon-scaffold_509-1575043694:23277..24167 | TCONS_00069820-exon-scaffold_509-1575043694:23277..24167 | Clytia hemisphaerica | exon |
| TCONS_00069820-exon-scaffold_509-1575043694:22552..22679 | TCONS_00069820-exon-scaffold_509-1575043694:22552..22679 | Clytia hemisphaerica | exon |
| TCONS_00069820-exon-scaffold_509-1510915933:23277..24167 | TCONS_00069820-exon-scaffold_509-1510915933:23277..24167 | Clytia hemisphaerica | exon |
| TCONS_00069820-exon-scaffold_509-1510915933:22552..22679 | TCONS_00069820-exon-scaffold_509-1510915933:22552..22679 | Clytia hemisphaerica | exon |
| TCONS_00069820-exon-scaffold_509-1491911889:23277..24167 | TCONS_00069820-exon-scaffold_509-1491911889:23277..24167 | Clytia hemisphaerica | exon |
| TCONS_00069820-exon-scaffold_509-1491911889:22552..22679 | TCONS_00069820-exon-scaffold_509-1491911889:22552..22679 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_509 | supercontig | scaffold_509:22552..24167 - |
Blast
The following BLAST results are available for this feature:
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