Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069826 ID=TCONS_00069826|Name=TCONS_00069826|organism=Clytia hemisphaerica|type=transcript|length=2159bpRun BLAST on NCBI protein sequence of TCONS_00069826-protein >TCONS_00069826-protein ID=TCONS_00069826-protein|Name=TCONS_00069826-protein|organism=Clytia hemisphaerica|type=polypeptide|length=590bp MDHLTEESCTHSDINKVATIEFYQCGPCNEILYSFNKMTMNLSFRMDQWNRun BLAST on NCBI transcript from alignment at scaffold_509:16326..18484 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069826 ID=TCONS_00069826|Name=TCONS_00069826|organism=Clytia hemisphaerica|type=transcript|length=2159bp|location=Sequence derived from alignment at scaffold_509:16326..18484 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_509:16326..18484 >TCONS_00069826 ID=TCONS_00069826|Name=TCONS_00069826|organism=Clytia hemisphaerica|type=CDS|length=1773bp|location=Sequence derived from alignment at scaffold_509:16326..18484 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069826 vs. Swiss-Prot (Human)
Match: ZFP62 (Zinc finger protein 62 homolog OS=Homo sapiens GN=ZFP62 PE=1 SV=3) HSP 1 Score: 216.853 bits (551), Expect = 1.464e-59 Identity = 183/615 (29.76%), Postives = 281/615 (45.69%), Query Frame = -1 Query: 294 YQCGPCNEILYSFNKM-------TMNLSFRMDQWNTFVKQLMANFNVNATNVSLQNLDCKECGQTFPSTEKLSQ----HISTDPMACETCFQIFSCHVKYKEHCDNHVKKKPFQCYICKKGFMHKQSLDKHIPLHNQSQNAVVTRVDLPYRVTGSLITGYRNKRTNVV-RNFKCDFCGKAFEFNNALQTHIRTHTGEKPFKCNICEKAFSDKGSSVKHQRTHTGERPHKCDVCEKLFANAGNLRLHYIQHTGEKPYICKVCDESFTSRYLLNKHLSVHSG-KPFI-------YRKNG------KLHT------CEICQKTYTKKSGLRNHYKVHQPGYNRNPRSAPLLECTVCGHKCKYPSDLKKHMLYKHNPDERPLECDVCGKRFVQPSSLAIHQRRAHTGEKPFPCDICGKRYYSVSDRNEHMKVSAHP-----KCDVCGQAFPNRRDWKTHMKTHTTGQESDSTKEKP--TNQGETHDKTAFQLKKYSVKHARK--YACKLCEKKYKYSQDLKKHVKKEHDGGLDKE-----KTDIAQFN-INKETTHEFTTDEIPATVNELQTV--SAKDPLTQNNISFSEDFQSGAHKCAVCSKSFPQSANLWEHFQLH 1991 Y+C C S + + T ++ ++ + N +T+ +N C ECG++F + L Q H P C C + F + H H +KP++C IC K F + L H +H + + +L+ +K + + +KCD C K+F +++ L H HTGEKP++C+ C KAF + + H+R HTGE+P+KCDVC K F+ + L +H H G+K + CK C +SF+ LL +H ++H+G +P++ +R N +LHT C++C K Y +S L+NH +H P +C+ C Y S L++H + + E+P CD CGK F S L +H +R HTGE+P+ C+ CGK Y S+S H S HP KCD C +AF R H K H EKP + E L ++ H R+ Y C CEK ++ + LK H K+ H G E K I+ + IN ++TH T P T +E S++ ++ + E KC C KSF S+ L +H ++H Sbjct: 169 YECDDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLN---HKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFSYNSLLLQHRTIHTGERPYVCDVCGKTFRNNAGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIH---LGEKP-----YKCSYCEKSFNYSSALEQHK--RIHTREKPFGCDECGKAFRNNSGLKVH-KRIHTGERPYKCEECGKAYISLSSLINHK--SVHPGEKPFKCDECEKAFITYRTLTNHKKVHLG--------EKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVH-KRIHTGERPYECDVCGKAYISHSSLINHKSTHPGRT---PHTCDECGKAFFSSRTLISHKRVHLGEK----PFKCVECGKSFSYSSLLSQHKRIH 751 HSP 2 Score: 204.142 bits (518), Expect = 2.947e-55 Identity = 172/558 (30.82%), Postives = 247/558 (44.27%), Query Frame = -1 Query: 288 TNVSLQNLDCKECGQTFPSTEKLSQ----HISTDPMACETCFQIFSCHVKYKEHCDNHVKKKPFQCYICKKGFMHKQSLDKHIPLHNQSQNAVVTRVDLPYRVTGSLITGYRNKRTNVV-RNFKCDFCGKAFEFNNALQTHIRTHTGEKPFKCNICEKAFSDKGSSVKHQRTHTGERPHKCDVCEKLFANAGNLRLHYIQHTGEKPYICKVCDESFTSRYLLNKHLSVHSG-KPFIYRKNGK-------------LHT------CEICQKTYTKKSGLRNHYKVHQPGYNRNPRSAPLLECTVCGHKCKYPSDLKKHMLYKHNPDERPLECDVCGKRFVQPSSLAIHQRRAHTGEKPFPCDICGKRYYSVSDRNEH--MKVSAHP-KCDVCGQAFPNRRDWKTHMKTHTTGQESDSTKEKPTNQGET----HDKTAFQLKKYSVKHARKYACKLCEKKYKYSQDLKKHVKKEHDGGLDKEKTDIAQFNINKETTHEFTTDEIPATVNELQTVSAKDPLTQNNISFSEDFQSGAHKCAVCSKSFPQSANLWEHFQLHKK 1865 TN + C ECG++F +L Q H C+ C F + H H +KP++C C K +M SL H H+ +N + + L ++KR + + ++C CGKAF ++ L+ H R HTGEKP++C+IC K FS+ H+R HTGE+P++CD C K F L H H G+KPY C C++SF LL +H +H+G KP+ + GK +HT C++C K ++ SGL H +H PG + EC CG Y S L +H + ERP CDVCGK F + L +H RR HTGEKP+ CD+CGK Y S S H + + P KC C ++F + H + H T+EKP E + + ++ K R Y C+ C K Y L H K H G EK F DE +T++ + E +KC VC KSF ++ L +H ++H + Sbjct: 134 TNAVKKLHKCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLD---QHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIH-PGKKAH-------ECKECGKSFSYNSLLLQHRTI--HTGERPYVCDVCGKTFRNNAGLKVH-RRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIH--------TREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINH-KSVHPG----EKP--------------FKCDECEKAFITYRTLT-----NHKKVHLGEK----PYKCDVCEKSFNYTSLLSQHRRVHTR 641 HSP 3 Score: 200.29 bits (508), Expect = 5.262e-54 Identity = 151/463 (32.61%), Postives = 217/463 (46.87%), Query Frame = -1 Query: 537 DCKECGQTFPSTEKLSQH----ISTDPMACETCFQIFSCHVKYKEHCDNHVKKKPFQCYICKKGFMHKQSLDKHIPLHNQSQNAVVTRVDLPYRVTGSLITGYRNKRTNVV-RNFKCDFCGKAFEFNNALQTHIRTHTGEKPFKCNICEKAFSDKGSSVKHQRTHTGERPHKCDVCEKLFANAGNLRLHYIQHTGEKPYICKVCDESFTSRYLLNKHLSVHS-GKPF-------IYRKNG------KLHT------CEICQKTYTKKSGLRNHYKVHQPGYNRNPRSAPLLECTVCGHKCKYPSDLKKHMLYKHNPDERPLECDVCGKRFVQPSSLAIHQRRAHTGEKPFPCDICGKRYYSVSDRNEHMKVSAHPK---CDVCGQAFPNRRDWKTHMKTHTTGQESDSTKEKPTNQGETHDKTAFQLKKYSVKHARKYACKLCEKKYKYSQDLKKHVKKEHDG 1841 +CKECG++F L QH P C+ C + F + K H H +KP++C +C K ++ + SL H +H + + + + + +L ++KR + + F CD CGKAF N+ L+ H R HTGE+P+KC C KA+ S + H+ H GE+P KCD CEK F L H H GEKPY C VC++SF LL++H VH+ KP+ ++R N ++HT C++C K Y S L NH H PG R P + C CG L H + + E+P +C CGK F S L+ H +R HTGEKP+ CD CGK + + S H ++ K CD CG+A+ + H H Q + K N ++ K + Y C C K + +L KH K+ H G Sbjct: 422 ECKECGKSFSYNSLLLQHRTIHTGERPYVCDVCGKTFRNNAGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSAL---EQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPFKCDECEKAFITYRTLTNHKKVHLGEKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGERPYECDVCGKAYISHSSLINHKSTH-PG--RTPHT-----CDECGKAFFSSRTLISHK--RVHLGEKPFKCVECGKSFSYSSLLSQH-KRIHTGEKPYVCDRCGKAFRNSSGLTVHKRIHTGEKPYECDECGKAYISHSSLINHKSVHQGKQPYNCECGKSFNY-----RSVLDQHKRIHTGKKPYRCNECGKAFNIRSNLTKH-KRTHTG 864 HSP 4 Score: 192.2 bits (487), Expect = 3.049e-51 Identity = 145/496 (29.23%), Postives = 226/496 (45.56%), Query Frame = -1 Query: 708 YQCGPCNEILYSFNKMTMNLSFRMDQWNTFVKQLMANFNVNATNVSLQNLD-------CKECGQTFPSTEKLS----QHISTDPMACETCFQIFSCHVKYKEHCDNHVKKKPFQCYICKKGFMHKQSLDKHIPLH----------------NQSQNAVVTRV---DLPYR--------VTGSLITGYRNKRTNVVRNFKCDFCGKAFEFNNALQTHIRTHTGEKPFKCNICEKAFSDKGSSVKHQRTHTGERPHKCDVCEKLFANAGNLRLHYIQHTGEKPYICKVCDESFTSRYLLNKHLSVHSGKPFIYRKNGKLHTCEICQKTYTKKSGLRNHYKVHQPGYNRNPRSAPLLECTVCGHKCKYPSDLKKHMLYKHNPDERPLECDVCGKRFVQPSSLAIHQRRAHTGEKPFPCDICGKRYY-----------------------------SVSDRNEHMKVSAHP-KCDVCGQAFPNRRDWKTHMKTHTTGQES 1991 Y+C C + + + ++ S + K+ +F+ N+ + + + C CG+TF + L H P C+ C + + K H H+ +KP++C C+K F + +L++H +H N S V R+ + PY+ ++ S + +++ + FKCD C KAF L H + H GEKP+KC++CEK+F+ +H+R HT E+P++CD CEK+F N +L++H HTGE+PY C VC +++ S L H S H G+ HTC+ C K + L +H +VH P +C CG Y S L +H + + E+P CD CGK F S L +H +R HTGEKP+ CD CGK Y SV D+++ + P +C+ CG+AF R + H +TH TG+ES Sbjct: 393 YKCDVCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFSYNSLLLQHRTIHTGERPYVCDVCGKTFRNNAGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGE-KPFKCDECEKAFITYRTLTNHKKVHLGEKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGERPYECDVCGKAYISHSSLINHKSTHPGRT--------PHTCDECGKAFFSSRTLISHKRVH---LGEKP-----FKCVECGKSFSYSSLLSQHK--RIHTGEKPYVCDRCGKAFRNSSGLTVH-KRIHTGEKPYECDECGKAYISHSSLINHKSVHQGKQPYNCECGKSFNYRSVLDQHKRIHTGKKPYRCNECGKAFNIRSNLTKHKRTH-TGEES 867 HSP 5 Score: 160.229 bits (404), Expect = 1.114e-40 Identity = 130/451 (28.82%), Postives = 202/451 (44.79%), Query Frame = -1 Query: 288 KRTNVVRNF-KCDFCGKAFEFNNALQTHIRTHTGEKPFKCNICEKAFSDKGSSVKHQRTHTGERPHKCDVCEKLFANAGNLRLHYIQHTGEKPYICKVCDESFTSRYLLNKHLSVHSGKPFIYRKNGKLHTCEICQKTYTKKSGLRNHYKVHQPGYNRNPRSAPLLECTVCGHKCKYPSDLKKHMLYKHNPDERPLECDVCGKRFV---------------QP------------SSLAIHQRRAHTGEKPFPCDICGKRYYSVSDRNEHMKVSAHP---KCDVCGQAFPNRRDWKTHMKTHTTGQESDSTKEKPTNQGETHDKTAFQLKKYSVKHA-RKYACKLCEKKYKYSQDLKKHVKKEHDGGLDKEKTDIAQFNINKETTHEFTTDEIPATVNELQTVSAKDPLTQNNISFSEDFQSG--AHKCAVCSKSFPQSANLWEHFQLHKK 1538 ++TN V+ KCD CGK+F++N+ L H HTGEK ++C+ C F S H+R HTGE+P+KC+ C K + + +L H H+GEK C C +SF +L++H +H+G+ K + C C K + SGLR H ++H EC +CG S L+ H + + E+P ECD CGK F+ +P SSL I + HTGEKP+ CD CGK + + S H ++ KCDVCG+AF H H G+++ KE G++ + L+ ++ R Y C +C K ++ + LK H + T E P + V K ++++++ + G +KC+ C KSF S+ L +H ++H + Sbjct: 132 QKTNAVKKLHKCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGE--------KPYECGECGKAFRNSSGLRVHKRIHT--------GEKPYECDICGKTFSNSSGLRVHK--RIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIH-PGKKAHECKE----CGKSFSYNSLLLQHRTIHTGERPYVCDVCGKTFRNNAGLKVHRR--------------------------LHTGEKPYKCD----VCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTR 529 The following BLAST results are available for this feature:
BLAST of TCONS_00069826 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|