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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069883 ID=TCONS_00069883|Name=TCONS_00069883|organism=Clytia hemisphaerica|type=transcript|length=955bp
ATTTCAATCAACTCTTAAAATAACAAAGCCAGAGTCCCAAAGCGATGCAT
TAGTGGCGATACAAGTGATTACCAAGGAATTCCCAATGGAAGATCTTTAG
CTCtttaaaatgagataaaatgatGCACTTGGCACAAACGCATTAAAGAA
ATTTGAGTTGTTTAAAATCGTTCCAGAAAACACAGCAAAGATGAAACTTG
CAATTTCACTTGTTGGACTATTCGTCCTCGGTTGTGTTGCTACACCTTTA
GCAATTCTTGAGGAAAATGATCCAATACTGATTAAGGGTGAACATATCCT
TCCTGATAGACTTGAAAACGATTTATCAGAAATTTACGAAGATATCATTG
ATAAAAGTTTTGTCAGACCTGCATCTACTCGCCGAGcaatgaaatcaaaa
agaagGATTTCCACTAACAAACCATCGACCGGTGTTCcaagaaaaatgtc
agaaaaacaGACTACTGGAGGCGTTTCTGAAACTACCACGCCATCACGCC
CCACTGAATCCACTCTACCAACAACTAGCGCTTCCATTCAAGAAGAGTCG
ACCCCTTCTGTAGAATCCACTGAAGCTATCATTGAACAAACAACTACACC
GTTTATCCAAAGTGAAAGTACTGAGAAACCCAAACCAAGTATTGTAAGGG
TACTCAAAGGATTGATCAAGAAATTGCAAAACTTACACAATCGGAATGTT
GCATTATGGGAAATTGTTGACACTATTCAGAATCGAATGGATCacgtttt
caaaaatgaatCGAACGAATGAACAGCCATTTTGGATTTTACCAATGCTT
ATGttatatttaatttattttgacatttaGAACAGTTCAGATTTCATGTA
GATATTTATTCGAAATAATATAACTTTCCATTGAAACGTTGTCTTCAGAA
ATCTTGAAACCTAAAACGAGaaacaatgttttgaaaaagattatttcaag
tagaa Run BLAST on NCBI transcript from alignment at scaffold_511:165792..167688+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069883 ID=TCONS_00069883|Name=TCONS_00069883|organism=Clytia hemisphaerica|type=transcript|length=1897bp|location=Sequence derived from alignment at scaffold_511:165792..167688+ (Clytia hemisphaerica)
ATTTCAATCAACTCTTAAAATAACAAAGCCAGAGTCCCAAAGCGATGCAT
TAGTGGCGATACAAGTGATTACCAAGGAATTCCCAATGGAAGATCTTTAG
CTCtttaaaatgagataaaatgatGCACTTGGCACAAACGCATTAAAGAA
ATTTGAGTTGTTTAAAATCGTTCCAGAAAACACAGCAAAGATGAAACTTG
CAATTTCACTTGTTGGACTATTCGTCCTCGGTAGGATTTTTCAACAATCT
TCTTTACCTTTTTCATCAGCATTACTtcagcaaattttttatttaaagaa
aGAAACTTCCTGTTCGTATCATTTTCTTCCAATGTAGTCTCTTTAATTCA
AACATCTATAAACTGAATGTCTCCTTGATTCGAAAAAGTTTTATAGTCCC
TTCAGTCAATGTCTTGTTACCCCAcaactgaaatttccttaactcaaaca
aatttacGTCCCCCGTGGACGTTCGAGCTATGGAGACTCCCCCTGTTACG
AATTTTTCTAAGCATCTTTAATGAGTTATACACACTTTGGTGAAAGTTAC
tgttcgatttatatatcttcattttctttactGTACAGGTTGTGTTGCTA
CACCTTTAGCAATTCTTGAGGAAAATGATCCAATACTGATTAAGGGTGAA
CNTCCTTgactcgaaaaagttttataGTCCCTTCAGTCAATGTCTTGTTA
CCCCAcaactgaaatttccttaactcaaacaaatttacGTCCCCCGTGGA
CGTTCGAGCTATGGAGACTCCCCCTGTTACGAATTTTTCTAAGCATCTTT
AATGAGTTATACACACTTTGGTGAAAGTTACtgttcgatttatatatctt
cattttctttactGTACAGGTTGTGTTGCTACACCTTTAGCAATTCTTGA
GGAAAATGATCCAATACTGATTAAGGGTGAACATATCCTTCCTGATAGAC
TTGAAAACGATTTATCAGAAATTTACGAAGATATCATTGATAAAAGTTTT
GTCAGACCTGCATCTACTCGCCGAGcaatgaaatcaaaaagaagGATTTC
CACTAACAAACCATCGACCGGTGTTCcaagaaaaatgtcagaaaaacaGA
CTACTGGAGGCGTTTCTGAAACTACCACGCCATCACGCCCCACTGAATCC
ACTCTACCAACAACTAGCGCTTCCATTCAAGAAGAGTCGACCCCTTCTGT
AGAATCCACTGAAGCTATCATTGAACAAACAACTACACCGTTTATCCAAA
GTGAAAGTACTGAGAAACCCAAACCAAGTATTGTAAGGGTACTCAAAGGT
AAGATTTTTTGCTGCTTTTGTCTCGCAATTCCTTTAGAAGCATTGCATTT
TGGATTCTGGCAAAGTTATCTTAAACATAAATTTTCGAGAACACCTGAAT
TAGGACTTGAATTCGTTCTTATCGAAAACATCTTTCAGTCTGATGGTAAT
AAGAGGTTAGTAAGGATGTTTTTGAACCTTTAAAATTCAATATCTGGAGT
TGTCATTTCGCGATCCAGTTTAGCCGGTATTTCACCAGATTATAGTCTGG
ATTGTTTTTCAGTGAAACAGGGACGATATATTCACATCTCTAATATTTCA
GGATTGATCAAGAAATTGCAAAACTTACACAATCGGAATGTTGCATTATG
GGAAATTGTTGACACTATTCAGAATCGAATGGATCacgttttcaaaaatg
aatCGAACGAATGAACAGCCATTTTGGATTTTACCAATGCTTATGttata
tttaatttattttgacatttaGAACAGTTCAGATTTCATGTAGATATTTA
TTCGAAATAATATAACTTTCCATTGAAACGTTGTCTTCAGAAATCTTGAA
ACCTAAAACGAGaaacaatgttttgaaaaagattatttcaagtagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069883-exon-scaffold_511-1491911889:165792..166021 | TCONS_00069883-exon-scaffold_511-1491911889:165792..166021 | Clytia hemisphaerica | exon |
| TCONS_00069883-exon-scaffold_511-1510915933:165792..166021 | TCONS_00069883-exon-scaffold_511-1510915933:165792..166021 | Clytia hemisphaerica | exon |
| TCONS_00069883-exon-scaffold_511-1575043694:165792..166021 | TCONS_00069883-exon-scaffold_511-1575043694:165792..166021 | Clytia hemisphaerica | exon |
| TCONS_00069883-exon-scaffold_511-1491911889:166661..167089 | TCONS_00069883-exon-scaffold_511-1491911889:166661..167089 | Clytia hemisphaerica | exon |
| TCONS_00069883-exon-scaffold_511-1510915933:166661..167089 | TCONS_00069883-exon-scaffold_511-1510915933:166661..167089 | Clytia hemisphaerica | exon |
| TCONS_00069883-exon-scaffold_511-1575043694:166661..167089 | TCONS_00069883-exon-scaffold_511-1575043694:166661..167089 | Clytia hemisphaerica | exon |
| TCONS_00069883-exon-scaffold_511-1491911889:167393..167688 | TCONS_00069883-exon-scaffold_511-1491911889:167393..167688 | Clytia hemisphaerica | exon |
| TCONS_00069883-exon-scaffold_511-1510915933:167393..167688 | TCONS_00069883-exon-scaffold_511-1510915933:167393..167688 | Clytia hemisphaerica | exon |
| TCONS_00069883-exon-scaffold_511-1575043694:167393..167688 | TCONS_00069883-exon-scaffold_511-1575043694:167393..167688 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:165792..167688 + |
Blast
The following BLAST results are available for this feature:
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