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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069890 ID=TCONS_00069890|Name=TCONS_00069890|organism=Clytia hemisphaerica|type=transcript|length=5984bpRun BLAST on NCBI transcript from alignment at scaffold_511:224319..239689+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069890 ID=TCONS_00069890|Name=TCONS_00069890|organism=Clytia hemisphaerica|type=transcript|length=15371bp|location=Sequence derived from alignment at scaffold_511:224319..239689+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00069890 vs. Swiss-Prot (Human)
Match: DYH6 (Dynein heavy chain 6, axonemal OS=Homo sapiens GN=DNAH6 PE=2 SV=3) HSP 1 Score: 837.795 bits (2163), Expect = 0.000e+0 Identity = 493/1427 (34.55%), Postives = 792/1427 (55.50%), Query Frame = 3
Query: 900 LCKLFIFSYTWSFGGHFNCLDEEAEEIDKYCHIPSFEGLENNTIRQDFDQFARDIFDKNTDVVMPAGANLLYSYYVDFEKGSFMLWDHLVLNATLTSEADAQTKTTSLIPTPSTLCYTFXXXXXXXXXXXXXXAGHAGYGKTTIIKETLSKLNQPGGSDPARNSILGAVLHQRSIRKANDANFLFQEMSLKNKEPDERVXXXXXXXXXXXXPDRPKNALLSKLSKRGRDAYGTRHGEKVILFIDDMTMPKADEFGAQPPLEILRDQLVYSGFFHTKELHWKNIFNTTLVAAC---GGGQKDVLVKNKRLLQKFSTLCLPHPSAQALHHVYYTRMTRVIDPIDFTPEVITLRSGIISTLLGIFNQLTLKLRTIPAKSHYMFNIRDITKVVTGVLHASSTVIRTKDQFIELLIHETSRIFLDRLINEEDENIFNLVLLDQIHDFLKTKWNKDRLLTNKGTFGDFVEINVIQEKRVYQCIRDQRKLVSIIEDYYDRARVAGRDIPMNLVLFPQYCQHIVAAARVLRQTGGHLLMIGIGGTGKKSVIQLASYMQFCEFYQPTVSKNYCINDFKEDIKKVLLKAGVEGIKITFFLNDRNIVQESFMEYVCSLMSGSGFSNFFDSEGKENISVKLRSDQNIRQSSDDSMESLFELFKQRVKQNLHVVFSTSPFTEHFQERCRVYPAIINYSTVDWYNKWPAEALSIVAEKFIL-----DKSLQEAINIPRAFLDILVFTHSTANDMCKRFLNELGRHFHVTPKSXXXXXXXXXXXXXQRKAKKEFKLERLRSGLLKLEYTNENVLKMQDELISLGPILEQKTKATEDLMVEIEEDRTKVDRVRAVVKKEQEVTDFETRKVESVAYEAQKDLDXXXXXXXXXXXXXDTLNKYDIGEIRSYAKPPVMVMTVLSAVCIILSEKPDWPTAKLLLADPGFLKKLINFDYNNVDDKIYTRIKRYTKKSDFNPIAVGKISVACKSLCTWVLALEHYTAVSRMVRPKQEKCREAQQALQRALKNLASKEASLQKVEEQLQGLERRYRESVQQLEDVKNSKALTIKRLQTADLLINALTSEKDRWAESIGTLDDDTSYLITDAFLTAAGTAYIGAFPPDYRANFFKIIEAKIKDSEN--IKIRDGFQLSTSVTSQIQIQDWLNFGLPHDTHSIENALFIQTTQHWPFIIDPQRQALYWIKSMERENVLKIVDASAKNLMQVMESSIRLGASVIMQNASASLDPSLDPILKKSIVKRGNQSILTLGDSEIEYNPQFRLYILTNENNPKALPELCIKVMVVNFIVTPNGITDQILSKIVQQXXXXXXXXXXXXXXXXVQEKLYLRQLEDIALNLLHKSEGNLLDNEELIQTLDNSKTKASEIKKRVAIAEKTESELGQKRKVYLPLAVRGSLLYFIAADLASIDSMYQFSLAWFMEMFRKCLAT 5150
LC+ F+F Y WS GG+ EN FD F R FD N D +P +L +S ++DF+ W+ ++ T D L+PT T+ Y +L+ L +L G G GK+ I K L+K+ + G P NF Q S + +E E SKL ++ ++ G +++++F+DD+ MP+ D +G+QPP+E+LR + GF+ +L WK I + T+++AC GGG+ V R ++ FS LCLP PS +L ++ + + DF P V S I+ + I+N++++ L PAKSHY+FN+RD++K V G+L IR + Q L HE R+F DRLIN ED++ F+++L + + + + L FGDF++ + R+Y + D K ++++DY D + + LV F +H+ AR++RQ G+ L++G+GGTGK+S+ +LA+++ + Q +S+ Y + F ED++K+ AGVE + F D IV E F+E + ++++ N F+ + E + R S+ + + +F+ F +V+Q LH+V SP E F+ RCR++P+++N T+DW+ +WP EAL V++ F ++ L+E + + + V H + + M +R+ NEL R ++ TP S+L+ I L+ + +++ + +R+++GL KL TN V KM+ +L +L P+L K++ E LM ++ D+ D+VR V++++ + + +++A +AQ+DLD ALP L+AA ALD+L+K DI EIR + KPP +VMTV+ A+ I+L+ KPDWP+AK LL D FLK+L+ +D N+ +I ++++Y DF P V K+S ACKS+C WV A++ Y+ V ++V PK++K R AQ L + L K+A L++VE+Q+Q L+ Y + V + E + + ALT RL A L AL E+ RW ESI +++ S + + F+ AA AY GAF YR + +IE I+D ++ I I F L + +I+ W GLP D S EN + + + WP +IDPQ QA WI++ E ++ LKI+ + N ++++E+SIRLG V+++ +LDP+L+PIL K I G + ++ LGDS+I+Y+ FR Y+ T NP LPE+CIKV ++NF VT +G+ DQ+LS +V+ E P LE +R +L+ + +K L+ +E+ L +L SEGN+LDNEELI TL +SK + IK R+ AE TE + R+ Y P+A +GS++YF+ A L+ ID MYQ+SL +F ++F + T
Sbjct: 1989 LCQTFVFCYLWSLGGNLT---------------------EN--YYDSFDTFIRTQFDDNPDARLPNSGDL-WSIHMDFDTKRLDPWERII--PTFKYNRDVPF-FEMLVPTTDTVRYGYLMEKLLAVKHSVLFTGITGVGKSVIAKGLLNKIQESAGYVPVY------------------LNFSAQTSSARTQEIIE-----------------------SKLERKRKNILGAPGNKRIVIFVDDLNMPRLDRYGSQPPIELLRQYQDFGGFYDRNKLFWKEIQDVTIISACAPPGGGRNPV---TPRFIRHFSMLCLPMPSEHSLKQIFQAILNGFLS--DFPPAVKQTASSIVEASVEIYNKMSVDLLPTPAKSHYVFNLRDLSKCVQGILQCDPGTIREEIQIFRLFCHECQRVFHDRLINNEDKHYFHVILTEMANKHFGIAIDLEYFLNKPIIFGDFIKFGADKADRIYDDMPDIEKTANVLQDYLDDYNLTNPK-EVKLVFFQDAIEHVSRIARMIRQERGNALLVGVGGTGKQSLTRLAAHICGYKCLQIELSRGYNYDSFHEDLRKLYKMAGVEDKNMVFLFTDTQIVVEEFLEDINNILNSGEVPNLFEKDELEQVLAATRPRAKEVGISEGNRDEVFQYFISKVRQKLHIVLCMSPVGEAFRSRCRMFPSLVNCCTIDWFVQWPREALLSVSKTFFSQVDAGNEELKEKLPL------MCVNVHLSVSSMAERYYNELRRRYYTTPTSYLELINLYLSMLSEKRKQIISARDRVKNGLTKLLETNILVDKMKLDLSALEPVLLAKSEDVEALMEKLAVDQESADQVRNTVQEDEATAKVKAEETQAIADDAQRDLDEALPALDAANKALDSLDKADISEIRVFTKPPDLVMTVMEAISILLNAKPDWPSAKQLLGDSNFLKRLLEYDKENIKPQILAKLQKYINNPDFVPEKVEKVSKACKSMCMWVRAMDLYSRVVKVVEPKRQKLRAAQAELDITMATLREKQALLRQVEDQIQALQDEYDKGVNEKESLAKTMALTKARLVRAGKLTAALEDEQVRWEESIQKFEEEISNITGNVFIAAACVAYYGAFTAQYRQS---LIECWIQDCQSLEIPIDPSFSLINILGDPYEIRQWNTDGLPRDLISTENGILVTQGRRWPLMIDPQDQANRWIRNKESKSGLKIIKLTDSNFLRILENSIRLGLPVLLEELKETLDPALEPILLKQIFISGGRLLIRLGDSDIDYDKNFRFYMTTKMPNPHYLPEVCIKVTIINFTVTKSGLEDQLLSDVVRLEKPRLEEQRIKLIVRINTDKNQLKTIEEKILRMLFTSEGNILDNEELIDTLQDSKITSGAIKTRLEEAESTEQMINVAREKYRPVATQGSVMYFVIASLSEIDPMYQYSLKYFKQLFNTTIET 3332 HSP 2 Score: 174.096 bits (440), Expect = 5.396e-43 Identity = 88/225 (39.11%), Postives = 132/225 (58.67%), Query Frame = 3
Query: 18 VVSMVTINPKALTLGELYGQFDANTAEWTDGILSYAIRNYALQNTEKPXXXXXXXXXXXXXXXLLPTEDELKAMQGDKQFGKSLHQWIVFDGPVDTLWVENLNTVLDDTKLLCLSNGERISMLPSMKVIFEVDSLVHASPATISRCGMVFMDPQDLGWQPSVKSWLNKLRVIKIPEEQRDYLWSLFEISIEPGLQFLRDNAQHRFTDVPDLSVVQMLCNLLDAFL 692
V +NPK++T+GELYG+ + T EW DG+++ ++R A+ +T +ED H+WI+ DGPVD LW+EN+NTVLDD K+LCL+N ERI + P + ++FEV L ASPAT+SRCGMVF+DP++L W P VK+W+ + K+ EE ++Y+ +LF+ ++ GL F+ V D+S V LC LL++ +
Sbjct: 1785 AVKTYVLNPKSITMGELYGEVNNLTLEWKDGLMALSVRA-AVNDT---------------------SED---------------HKWIISDGPVDALWIENMNTVLDDNKMLCLANSERIKLTPQIHMLFEVQDLRVASPATVSRCGMVFVDPEELKWMPYVKTWMKGISK-KLTEETQEYILNLFQRYVDEGLHFINKKCSQAIPQV-DISKVTTLCCLLESLI 1970 The following BLAST results are available for this feature:
BLAST of TCONS_00069890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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