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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069892 ID=TCONS_00069892|Name=TCONS_00069892|organism=Clytia hemisphaerica|type=transcript|length=1172bp
TGAACACAGTCATTACTATCAATCATCATGCATAATTTATTCGTTAGAGT
TATATTATTACTGTTAGTAGTGCAGGCAGCAGCCTTGCCTGTTAGACAAA
CCAGATCCAACGATGATGGCTTTAACCGGAAAGAGTGTGGTGATGATGAT
AAATACCATATGAAAAGAATGCGAGAATTCGAACCAAAGTTAAATACAGT
ACGTAAATCAATTGGTAAAGTCGCACTGGATGCTGCAATCGAAGGTCAAT
CAAGACTTTGCAATCAATCTGCTTTATGGAAAGTTGAGTTGCCAGTATTC
AGAGCCGGCCGAAGTACAGCGGAATCAGCAATacaattgaaaatatattc
agtGATATTGAAAACGTATCAAGATAGTGCCATTGAAACATATCGGCTAT
CGAAACAAAATTCTCAAACTCAGGAAGCGACAACAATTGATGAATATTAC
GGAGCCATGTGGAATAAGTTGAATATTGATAATCTGAAAGAGAGAATCGA
CGTGCGTTTGATTATTCAGTATCTCGATGAAACTTTTCTGAAAATCACCA
GTTACTGTGGCCTCCACAGAGATGAAGTCAATGATGACAAGATCAAGGAA
GCAACATCCAAAATAGTGAAGGATATAGAGCACGGATTCAAACGCCAACA
AAATAAATGTAAACACATGAAGAACCATCTAGTACCTATCCTTAGACGGC
AAGCTGAGGACCTGCAACTCCTTTGGGATAATCTGATAGCTGAAGTCAGA
AACAGGATTGATTTACATGACAGAGAACACCATAGTtgatttttaataac
ttttacCTAAAATtaacgtttatttatttttttctattatattTAAAATg
cattatttatttatttatttatttagaaacaaaatagaaatatatttttg
tacCTTGTGAATACtgtaaatatttatatttatcttagaaaataatttat
acCTCGAAGGGTGTACATATATTTTATATAGACTagagattttttacttt
tttttattccttaaaatttatttattttatagtaCAATTTATacgaaaaa
gttaaaaatgaattttacaaatattttacaaatttaagAGAATTTAAAAG
TATTAAAATCGTGGAAAGATATGAAACTagtatttaaaagaaaaatttaa
aagaaaaattatttataaatag Run BLAST on NCBI transcript from alignment at scaffold_511:265536..267417+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069892 ID=TCONS_00069892|Name=TCONS_00069892|organism=Clytia hemisphaerica|type=transcript|length=1882bp|location=Sequence derived from alignment at scaffold_511:265536..267417+ (Clytia hemisphaerica)
TGAACACAGTCATTACTATCAATCATCATGCATAATTTATTCGTTAGAGG
TAAGACAGCCTCAGAGATTGACTGATTTTTACAAACTTAATgtctttttt
aattaaaattcatggaattgaGTATACAATCAATTGGATAaacttttgat
gttttttctcCTTCAGTGAATCACTTCTAGTCGCTTGGGTGTAagagtgt
gtgtgtgtgtgattgttggcaaaattttgttggattctttttctgaaatt
atagtatgatttttatgaaattcaatcttttaatatttattttctccttt
tttttagTTATATTATTACTGTTAGTAGTGCAGGCAGCAGCCTTGCCTGT
TAGACAAACCAGATCCAACGATGATGGCTTTAACCGGAAAGAGTGTGGTG
ATGATGATAAATACCATATGAAAAGAATGCGAGAATTCGAACCAAAGTTA
AATACAGTACGTAAATCAATTGGTAAAGTCGCACTGGATGCTGCAATCGA
AGGTCAATCAAGACTTTGCAATCAATCTGCTTTATGGAAAGTTGAGTTGC
CAGTATTCAGAGCCGGCCGAAGTACAGCGGTATGTATATTTCGATTTCAT
CACACGATCTAAACATTTTATTGAGGGCTTTACTAGGCTTCAGGGTTTTA
CAAAGGCAATACAAGCCTCCAACTCTCCTATCAATATATAGAAAATCACC
AGAAACATTTTATTGTCCTTCGGAGTCAACATTCTTAAACTTCTTTTCTT
CATTCTACAGGAATCAGCAATacaattgaaaatatattcagtGATATTGA
AAACGTATCAAGATAGTGCCATTGAAACATATCGGCTATCGAAACAAAAT
TCTCAAACTCAGGAAGCGACAACAATTGATGAATATTACGGAGCCATGTG
GAATAAGTTGAATATTGATAATCTGAAAGAGAGAATCGACGTGCGTTTGA
TTATTCAGTATCTCGATGAAACTTTTCTGGTAAGTTTTATTCTTTCCTTT
ACAATGTTATTTCTGTCATTTCTTAAAAATGTCCTTTACTAAGAAACATG
ATCTCCAGGAAGTGGAATTCGATGCGTTGTGTTTGTTCTATTTTGGAATG
ATTGCTTTAGAAGAAGGTTTATGCTCGTTGAAGGTGTATCGTACAAGAGG
AAAACAAACCAGCTAAGATGACTTATTTCAAACTTTGCCAAAACTTTCCA
AGTacctatttcaaaatttataacaaattaatttctttatttCGTTACAG
AAAATCACCAGTTACTGTGGCCTCCACAGAGATGAAGTCAATGATGACAA
GATCAAGGAAGCAACATCCAAAATAGTGAAGGATATAGAGCACGGATTCA
AACGCCAACAAAATAAATGTAAACACATGAAGAACCATCTAGTACCTATC
CTTAGACGGCAAGCTGAGGACCTGCAACTCCTTTGGGATAATCTGATAGC
TGAAGTCAGAAACAGGATTGATTTACATGACAGAGAACACCATAGTtgat
ttttaataacttttacCTAAAATtaacgtttatttatttttttctattat
attTAAAATgcattatttatttatttatttatttagaaacaaaatagaaa
tatatttttgtacCTTGTGAATACtgtaaatatttatatttatcttagaa
aataatttatacCTCGAAGGGTGTACATATATTTTATATAGACTagagat
tttttacttttttttattccttaaaatttatttattttatagtaCAATTT
ATacgaaaaagttaaaaatgaattttacaaatattttacaaatttaagAG
AATTTAAAAGTATTAAAATCGTGGAAAGATATGAAACTagtatttaaaag
aaaaatttaaaagaaaaattatttataaatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069892-exon-scaffold_511-1491911889:265536..265584 | TCONS_00069892-exon-scaffold_511-1491911889:265536..265584 | Clytia hemisphaerica | exon |
| TCONS_00069892-exon-scaffold_511-1510915933:265536..265584 | TCONS_00069892-exon-scaffold_511-1510915933:265536..265584 | Clytia hemisphaerica | exon |
| TCONS_00069892-exon-scaffold_511-1575043694:265536..265584 | TCONS_00069892-exon-scaffold_511-1575043694:265536..265584 | Clytia hemisphaerica | exon |
| TCONS_00069892-exon-scaffold_511-1491911889:265843..266114 | TCONS_00069892-exon-scaffold_511-1491911889:265843..266114 | Clytia hemisphaerica | exon |
| TCONS_00069892-exon-scaffold_511-1510915933:265843..266114 | TCONS_00069892-exon-scaffold_511-1510915933:265843..266114 | Clytia hemisphaerica | exon |
| TCONS_00069892-exon-scaffold_511-1575043694:265843..266114 | TCONS_00069892-exon-scaffold_511-1575043694:265843..266114 | Clytia hemisphaerica | exon |
| TCONS_00069892-exon-scaffold_511-1491911889:266296..266514 | TCONS_00069892-exon-scaffold_511-1491911889:266296..266514 | Clytia hemisphaerica | exon |
| TCONS_00069892-exon-scaffold_511-1510915933:266296..266514 | TCONS_00069892-exon-scaffold_511-1510915933:266296..266514 | Clytia hemisphaerica | exon |
| TCONS_00069892-exon-scaffold_511-1575043694:266296..266514 | TCONS_00069892-exon-scaffold_511-1575043694:266296..266514 | Clytia hemisphaerica | exon |
| TCONS_00069892-exon-scaffold_511-1491911889:266786..267417 | TCONS_00069892-exon-scaffold_511-1491911889:266786..267417 | Clytia hemisphaerica | exon |
| TCONS_00069892-exon-scaffold_511-1510915933:266786..267417 | TCONS_00069892-exon-scaffold_511-1510915933:266786..267417 | Clytia hemisphaerica | exon |
| TCONS_00069892-exon-scaffold_511-1575043694:266786..267417 | TCONS_00069892-exon-scaffold_511-1575043694:266786..267417 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:265536..267417 + |
Blast
The following BLAST results are available for this feature:
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