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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069913 ID=TCONS_00069913|Name=TCONS_00069913|organism=Clytia hemisphaerica|type=transcript|length=1325bp
TAGAGCAGCACTGTAAAAAGTGTATAAATATGGTCACGTTTGAGAGTTTT
GAAGGATAGTTATCAGGCAAACCACAGAACGATGAGAGGGTTACTGGCTT
GTTGTCTCTTGGCAGCTCTAACCCTGAGTTACGCTAAGCCACTGTCTTGG
AAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATATTCT
AGCTGACAAAAAGAAAGCTATAGAGGAAGAAGGAGGATTTCAATACAGAA
GAGAATATCCGAAAAGACGTGCTGAGAGTTTGGATGGTACAGAGCAGTAT
CATACTACATCTCAACCCATTACAACAGATAGTTGGAGATTAcctaaatc
aaaatcaaatggaTATACCACAGATCGACCGTGGTATTGGACAACAGATC
GATCCTGGACTACTAGGCGCCCCTGGACCACTGGACGACCCTGGACTACT
TGGCACCCCTGGACCACTGGACGACCCTGGACTACTTGGCACCCATGGAC
CACTGGACGACCCTGGACTACTTGGCGCCCCTGGACCACTGGACGACCCT
GGACTACTTGGCGCCCATGGTGGACTACAAGTCGACCATCAGGAGGAAGA
ctcttaaaagaaaaagaacacaTTAATAAATCATGGGGATGGCTTGAAGA
GTACTTTTACAACAAGAAGAAGAAATAAGCAATGAAGTTGATGACACCGT
TATCGTATTGTCTACagacttttgttatttttttcatactCTATTTTTTG
CATCTTAGAttttttagtttgttttgtttgttattttttttgttgaaatt
tgtaACGCTTTTTAATTATGTTATGAACGATGTAAAACATATTCGTCCAA
TATGGTACACCGTACTTAACCTTAATGTTGACCGTGTAACTAATCAGAAA
ACTATTTATGATATAATTTCGGCCTTGGTTGCTACAATCATCCGCCGAAA
TATATCAcaaattttgggtattttaacgtttttcagactTTGAAGCTCGG
GCGAGGATTGCGATTTaagtattttatttgatttttcgatttgggggCGG
GGTTAAGAATTTAGAGTTAAAACTGTAACCTCCAATCGTACTTTAGTAAA
GTAACCGGAAACATAACTTTTATactcaaataccaaaatcaattttttga
ctatggtcagagccgtTAAGTGTAAGATATTACGGTGGGGATTGTAGTCT
TGAAACCATATAACTCCCCAAGAAGATATGGCAACCGAGCCGATTATCTA
TCATACCTTTGTATCACTTACTAACAATAACCTCTCCATCATCTAGTGAG
ATGTTTCCTATTTGTTCATTTTTCG Run BLAST on NCBI transcript from alignment at scaffold_511:343496..348551+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069913 ID=TCONS_00069913|Name=TCONS_00069913|organism=Clytia hemisphaerica|type=transcript|length=5056bp|location=Sequence derived from alignment at scaffold_511:343496..348551+ (Clytia hemisphaerica)
TAGAGCAGCACTGTAAAAAGTGTATAAATATGGTCACGTTTGAGAGTTTT
GAAGGATAGTTATCAGGCAAACCACAGAACGATGAGAGGGTTACTGGCTT
GTTGTCTCTTGGCAGCTCTAACCCTGAGTTACGGTAAGTAAGCATTATTT
CAAATGAATGATAATTCTAGTTTGCTCTTCAAGCTCATTTTCTCTTCAGG
CATATTTAAAAGACATTTAACCCTGAAGGGAGGGAATTATTATTTTATCA
TACCCTGCATTTTTAATGTTACGCAGAATAAATAAAACGAAAAATCTTGG
TCGTGTGGGGTGTGGCCTAATTTTTTCCGTAAGAATAAATTGAGTTGACA
CGAGATAATAATTTGTAGCGAAATAGTgcatagatttttttttctacttt
ttttctaGCTAAGCCACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGT
ACAACAAATTCGTGTACGATATTCTAGCTGACAAAAAGAAAGGTTATTAT
CATCAATACAACGGAGAATACATTGACATTGATATTTATTTTACTTCAGC
CTTTGTCGAAAATTATAGGAAATATTCATGGCCACAATAATCAATTTGCC
CATTagaaaaatttttcttcttcatttttcatcttcgttatctTTCCAAG
GAGGTACTCTTTTTTAACGTTAATTTTTACCAAGATTGATGTTTCAAAAT
TTACGACGGACTGCTAAGTTCTTTGGAAGAGAGTTTAATTACAACAAATA
ATAGGAAGATTGATCCCCTCAGGACACTTACCTCCCAGAAAAATCGATAT
TTACACACCTTTATGATGTTTTAGCTATAGAGGAAGAAGGAGGATTTCAA
TACAGAAGAGAATATCCGAAAAGACGTAAGAATTTATAGCAACATGtgcc
aaaaattgcaaaaataatgttaaaaacaaagcgataaaaaaataaaattt
gatttggTCTGATTCGGAGACCTCCGTACTTTTTCGTTTTATACTNTAAA
AGACATTTAACCCTGAAGGGAGGGAATTATTATTTTATCATACCCTGCAT
TTTTAATGTTACGCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGG
TGTGGCCTAATTTTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATA
ATTTGTAGCGAAATAGTgcatagatttttttttctactttttttctaGCT
AAGCCACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATT
CGTGTACGATATTCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACA
ACGGAGAATACATTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAA
AATTATAGGAAATATTCATGGCCACAATAATCAATTTGCCCATTagaaaa
atttttcttcttcatttttcatcttcgttatctTTCCAAGGAGGTACTCT
TTTTTAACGTTAATTTTTACCAAGATTGATATGTTTACGACGGAATGCCA
AGTTTTTTTGGAAGAGAGTTTAATTACAACAAATAGTAGGAAGATTGATC
CCCTCAGGACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTATG
ATGTTTTAGCTATAGAGGAAGAAGAAGGATTTCAATACAGANccttttgt
tatttttttcatactCTATTTTTTGCATCTtagattttttagttttttaa
tttcgcctagcgaaagtattacgatagcctttcgcggcggcggcggcggt
gtaataaaaaaattagaaaacgaaagtactcgatacggtggacNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNATTTGCAATAAAAATTGGAATCTCTCTGTAAGTTTTAATCCG
CATCCCTGTTACACCCTGTCAGGAAGGTGACACAAGCCTTGAAATTACAA
TTTTAATTAGAGCAGCACTGTAAAAAGTGTATAAATATGGTCACGTTTGA
GAGTTTTGAAGGATAGTTATCAGGCAAACCACAGAACGATGAGAGGGTTA
CTGGCTTGTTGTCTCTTGGCAGCTCTAACCCTGAGTTACGGTAAGTAAGC
ATTATTTCAAATGAATGATAATTCTAGTTTGCTCTTCAAGCTCATTTTCT
CTTCAGGCATATTTAAAAGACATTTAACCCTGAAGGGAGGGAATTATTAT
TTTATCATACCCTGCATTTTTAATGTTACGCAGAATAAATAAAACGAAAA
ATCTTGGTCGTGTGGGGTGTGGCCTAATTTTTTCCGTAAGAATAAATTGA
GTTGACACGAGATAATAATTTGTAGCGAAATAGTgcatagattttttttt
ctactttttttctaGCTAAGCCACTGTCTTGGAAAGACTATGAACGCCGA
AGAGCGTACAACAAATTCGTGTACGATATTCTAGCTGACAAAAAGAAAGG
TTATTATCATCAATACAACGGAGAATACATTGACATTGATATTTATTTTA
CTTCAGCCTTTGTCGAAAATTATAGGAAATATTCATGGCCACAATAATCA
ATTTGCCCATTagaaaaatttttcttcttcatttttcatcttcgttatct
TTCCAAGGAGGTACTCTTTTTTAACGTTAATTTTTACCAAGATTGATGTT
TCAAAATTTACGACGGACTGCTAAGTTCTTTGGAAGAGAGTTTAATTACA
ACAAATAATAGGAAGATTGATCCCCTCAGGACACTTACCTCCCAGAAAAA
TCGATATTTACACACCTTTATGATGTTTTAGCTATAGAGGAAGAAGGAGG
ATTTCAATACAGAAGAGAATATCCGAAAAGACGTAAGAATTTATAGCAAC
ATGtgccaaaaattgcaaaaataatgttaaaaacaaagcgataaaaaaat
aaaatttgatttggTCTGATTCGGAGACCTCCGTACTTTTTCGTTTTATA
CTATTGTGGTTGAACCTGATTATCAATAATCCTGTTAGCAAGAATAAAAA
TGTTTACAAAGTCATTAGTCATTGAATTAGGGGAAAAGGGTACCAAAAGA
ACTGTAACTTAGTAATAATCTATTACATTTTCCAGGTGCTGAGAGTTTGG
ATGGTACAGAGCAGTATCATACTACATCTCAACCCATTACAACAGATAGT
TGGAGATTAcctaaatcaaaatcaaatggaTATACCACAGATCGACCGTG
GTATTGGACAACAGATCGATCCTGGACTACTAGGCGCCCCTGGACCACTG
GACGACCCTGGACTACATGGCACCCCTGGACCACTGGACGACCCTGGACT
ACATGGCGCCCATGGACCACAGATCATCCCTGGACTACTTGGCACCCATG
GACCACTGGACGACCCTGGACTACTTGGCACCCCTGGACCACTGGACGAC
CCTGGACTACATGGCGCCCCTGGACCACAGATCATCCCTGGACTACTTGG
CACCCATGGACCACTGGACGACCCTGGACTACTTGGCGCCCCTGGACCAC
TGGACGACCCTGGACTACTTGGCGCCCATGGTGGACTACAAGTCGACCAT
CAGGAGGAAGActcttaaaagaaaaagaacacaTTAATAAATCATGGTAA
GAAAAAGTTTCCCAGCCAAAGATGTATTGTGTAAGACAAGAAGCCCGtgg
ggcgtgaaggcccagcaactTAAAAtctcctgggtggaaaatttttgaac
aggaggctaatacagcagaattagaaaaaaaaacaaggcgCTGTTATCGC
AAAAACTTTGGCGAACCGAACCACTAACCACAGACACTTCTATTTGAAAA
ACCCTTTTCGGCCTTTTCGATAAGCTGGGcaaattagaaaatttgaatgt
tttttgaTATCGTAAAGGTACGGACATGCAAGTATATATCTccaaacttt
ctttttgcattttaaACTAAGCAATTTATTTATTTGCTAATGCAATAcat
gatttatttttcatagGGGATGGCTTGAAGAGTACTTTTACAACAAGAAG
AAGAAATAAGCAATGAAGTTGATGACACCGTTATCGTATTGTCTACagac
ttttgttatttttttcatactCTATTTTTTGCATCTTAGAttttttagtt
tgttttgtttgttattttttttgttgaaatttgtaACGCTTTTTAATTAT
GTTATGAACGATGTAAAACATATTCGTCCAATATGGTACACCGTACTTAA
CCTTAATGTTGACCGTGTAACTAATCAGAAAACTATTTATGATATAATTT
CGGCCTTGGTTGCTACAATCATCCGCCGAAATATATCAcaaattttgggt
attttaacgtttttcagactTTGAAGCTCGGGCGAGGATTGCGATTTaag
tattttatttgatttttcgatttgggggCGGGGTTAAGAATTTAGAGTTA
AAACTGTAACCTCCAATCGTACTTTAGTAAAGTAACCGGAAACATAACTT
TTATactcaaataccaaaatcaattttttgactatggtcagagccgtTAA
GTGTAAGATATTACGGTGGGGATTGTAGTCTTGAAACCATATAACTCCCC
AAGAAGATATGGCAACCGAGCCGATTATCTATCATACCTTTGTATCACTT
ACTAACAATAACCTCTCCATCATCTAGTGAGATGTTTCCTATTTGTTCAT
TTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069913-exon-scaffold_511-1491911889:343496..343628 | TCONS_00069913-exon-scaffold_511-1491911889:343496..343628 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1510915933:343496..343628 | TCONS_00069913-exon-scaffold_511-1510915933:343496..343628 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1575043694:343496..343628 | TCONS_00069913-exon-scaffold_511-1575043694:343496..343628 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1491911889:346261..346344 | TCONS_00069913-exon-scaffold_511-1491911889:346261..346344 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1510915933:346261..346344 | TCONS_00069913-exon-scaffold_511-1510915933:346261..346344 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1575043694:346261..346344 | TCONS_00069913-exon-scaffold_511-1575043694:346261..346344 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1491911889:346677..346727 | TCONS_00069913-exon-scaffold_511-1491911889:346677..346727 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1510915933:346677..346727 | TCONS_00069913-exon-scaffold_511-1510915933:346677..346727 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1575043694:346677..346727 | TCONS_00069913-exon-scaffold_511-1575043694:346677..346727 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1491911889:346981..347161 | TCONS_00069913-exon-scaffold_511-1491911889:346981..347161 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1510915933:346981..347161 | TCONS_00069913-exon-scaffold_511-1510915933:346981..347161 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1575043694:346981..347161 | TCONS_00069913-exon-scaffold_511-1575043694:346981..347161 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1491911889:347270..347305 | TCONS_00069913-exon-scaffold_511-1491911889:347270..347305 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1510915933:347270..347305 | TCONS_00069913-exon-scaffold_511-1510915933:347270..347305 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1575043694:347270..347305 | TCONS_00069913-exon-scaffold_511-1575043694:347270..347305 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1491911889:347342..347491 | TCONS_00069913-exon-scaffold_511-1491911889:347342..347491 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1510915933:347342..347491 | TCONS_00069913-exon-scaffold_511-1510915933:347342..347491 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1575043694:347342..347491 | TCONS_00069913-exon-scaffold_511-1575043694:347342..347491 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1491911889:347862..348551 | TCONS_00069913-exon-scaffold_511-1491911889:347862..348551 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1510915933:347862..348551 | TCONS_00069913-exon-scaffold_511-1510915933:347862..348551 | Clytia hemisphaerica | exon |
| TCONS_00069913-exon-scaffold_511-1575043694:347862..348551 | TCONS_00069913-exon-scaffold_511-1575043694:347862..348551 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:343496..348551 + |
Blast
The following BLAST results are available for this feature:
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