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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069955 ID=TCONS_00069955|Name=TCONS_00069955|organism=Clytia hemisphaerica|type=transcript|length=1728bp CTCCCACGCAATTTTTGATATATAATTCTACATTCAGCATAGTTTAGCAA CCTTACACGAAAAGATTTTTTGAGAGATACTTTTGGAGACACAGTGTAAC CGCATGGATTAAAGGAGGCGATGAGTCaaactttaattaaaaaattttca taaaaaattatcgacTAAGGATATATAACTAGCGTTTGGATTGAGTTCCA AAATTAGTATCGAGTCAACGCCTAAACAGGATGAAGGTGTTCAAATTTTG CTGCCTTCTGGCAGTGATTGTTTTGACTGTAGCGAAACCCAATCAAGGAA ATGACGATGAGAAGCGAGTCGATAAACTATTAGACGATATCAAAGAAGCT GATACCTTGATCAAGAACgaaatcaaaactttgaaaggaATAAaaaaaga aattgcGTCAGACAGCACCAAAAAACCTTGGACTACCGGAAGATCTTGGA CCACTGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAGATCT TGGACCACCGGAAGACCTTGGACTACCAGAAGATCTTGGACTACCAGAAG ACCTTGGACTACCGGAAAACCTTGGACTACTGGAAGATCTTGGACTACCG GAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACT ACCGGAAGACCTTGGACTACCAGAAGATCTTGGACTACCGGAAGACCTTG GACTACCGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGAAGAT CTTGGACTACCGGAAGACCTTGGACTACCAGAAGATCTTGGACTACCGGA AGACCTTGGACTACCGGAAGATCTTGGACCACAGGAAAACCTTGGACTAC TGGAAGACCTTGGACTACCGGAAGATCTTGGACTACTGGAAGACCTTGGA CTACCGTAAGACCTTGGACCACCGGAAAACCTTGGACTACCGGAAGATAT TGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCAGAAG ATCTTGGACTACCGGAAGACCTTGGACTCCCGGAAGATCTTGGACCACCG GAAAACCTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGGACT ACCGGAAGACCTTGGACTACCGTAAGACCTTGGATCACCGGAAAACCTTG GACTATCGGAAGATATTGGACTACCGGAAGATCTTGGACTACCGGAAGAC CTTGGACTACCGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGA AGACCTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGGACTAC CGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAAACCTTGGA CTACTGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGAAGACCT TGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAG ACCTTGGACCACCAGGCGTTCCGGATGGTGGACCACACACCGCCCACGGC GTATATTGAaggGAAAATTCATCTTCTACATCGACGACAAGAAACGAAAG TAAAGACACTTCAAACAACTAATTTGTACCGTTTTTTATCAAATCAATTC TTGGAAGTTGACCAAGATTAACTTTAGGTTTAGcaacgtttttttctatt taattatttttctagTAATGTTTGAAACGAAAAATGGCaccctttgaaaa tattttgattcatCATTGCTTGCCATTC Run BLAST on NCBI protein sequence of TCONS_00069955-protein >TCONS_00069955-protein ID=TCONS_00069955-protein|Name=TCONS_00069955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
MKVFKFCCLLAVIVLTVAKPNQGNDDEKRVDKLLDDIKEADTLIKNEIKT LKGIKKEIASDSTKKPWTTGRSWTTGRPWTTGRSWTTGRSWTTGRPWTTR RSWTTRRPWTTGKPWTTGRSWTTGRSWTTGRPWTTGRSWTTGRPWTTRRS WTTGRPWTTGRSWTTGKPWTTGRSWTTGRPWTTRRSWTTGRPWTTGRSWT TGKPWTTGRPWTTGRSWTTGRPWTTVRPWTTGKPWTTGRYWTTGRSWTTG RPWTTRRSWTTGRPWTPGRSWTTGKPWTTGRPWTTGRSWTTGRPWTTVRP WITGKPWTIGRYWTTGRSWTTGRPWTTGRSWTTGKPWTTGRPWTTGRPWT TGRSWTTGRPWTTGRSWTTGKPWTTGRSWTTGKPWTTGRPWTTGRSWTTG RPWTTGRPWTTRRSGWWTTHRPRRILKGKFIFYIDDKKRK Run BLAST on NCBI transcript from alignment at scaffold_511:161012..163554- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069955 ID=TCONS_00069955|Name=TCONS_00069955|organism=Clytia hemisphaerica|type=transcript|length=2543bp|location=Sequence derived from alignment at scaffold_511:161012..163554- (Clytia hemisphaerica) CTCCCACGCAATTTTTGATATATAATTCTACATTCAGCATAGTTTAGCAA
CCTTACACGAAAAGATTTTTTGAGAGATACTTTTGGAGACACAGTGTAAC
CGCATGGATTAAAGGAGGCGATGAGTCAAACTTTAATTAAAAAATTTTCA
TAAAAAATTATCGACTAAGGATATATAACTAGCGTTTGGATTGAGTTCCA
AAATTAGTATCGAGTCAACGCCTAAACAGGATGAAGGTGTTCAAATTTTG
CTGCCTTCTGGCAGTGATTGTTTTGACTGTAGGTAAGAAATTTTTCATAC
TTTTTTTACTAAAGAAATGGATGAACCCAGGGTCTACCATGATAAGTTTA
ACTGGAAATTTCACTCACTTGGAAACTACTTCTCATCTACACTGGAAAGG
AACTTTTAACATCACCCATATTATATCGTGTAGTGTTTTCCCTTGTGGAA
AAAGACTATACCCAGTCAATATTCATATGCTAAATAAATTGTACATTTTT
CTGTGTCTGTCATTTTCAGCGAAACCCAATCAAGGAAATGACGATGAGAA
GCGAGTCGATAAACTATTAGACGATATCAAAGAAGCTGATACCTTGATCA
AGAACGAAATCAAAACTTTGAAAGGAATAAGTAAATATATTTTGTAAACA
AAGTATTGGACTTCAAAAATCTCATCAAAAGTTTTAAACATTCTCATATA
AACATGCACCAGTAAAACTCAAAACTTTTTGTAAAAATGTAAAAATTCAA
GTTTCATGCTAACAATCATCAGCTACACACTAAGGAGATAAATATTTGAA
AACTTATACTTAAGCTTAAACTTGTACTTTTAGAACTTACTAATAGTGCA
GCCCCAATCTTTTAGTCACCAGANACTTAAGCTTAAACTTTTACTTTTAG
AACTTACTAATAGTGCAGCCCCAATCTTTTAGTCACCAGAACTCTATCAA
ATTAAACTGTAAGTTTATTGTGAATCACAAATTGCTAAGGGGTACCATTT
TGCAGTTTGTTGACTCTTTTAAGTAGTATTTTTGATTGATTTTTCGCTTT
TAGAAAAAGAAATTGCGTCAGACAGCACCAAAAAACCTTGGACTACCGGA
AGATCTTGGACCACTGGAAGACCTTGGACTACCGGAAGATCTTGGACCAC
CGGAAGATCTTGGACCACCGGAAGACCTTGGACTACCAGAAGATCTTGGA
CTACCAGAAGACCTTGGACTACCGGAAAACCTTGGACTACTGGAAGATCT
TGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAG
ATCTTGGACTACCGGAAGACCTTGGACTACCAGAAGATCTTGGACTACCG
GAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAAACCTTGGACT
ACTGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCAGAAGATCTTG
GACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACCACAGGAAAAC
CTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGGACTACTGGA
AGACCTTGGACTACCGTAAGACCTTGGACCACCGGAAAACCTTGGACTAC
CGGAAGATATTGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGA
CTACCAGAAGATCTTGGACTACCGGAAGACCTTGGACTCCCGGAAGATCT
TGGACCACCGGAAAACCTTGGACTACTGGAAGACCTTGGACTACCGGAAG
ATCTTGGACTACCGGAAGACCTTGGACTACCGTAAGACCTTGGATCACCG
GAAAACCTTGGACTATCGGAAGATATTGGACTACCGGAAGATCTTGGACT
ACCGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAAACCTTG
GACTACTGGAAGACCTTGGACTACTGGAAGACCTTGGACTACCGGAAGAT
CTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGA
AAACCTTGGACTACTGGAAGATCTTGGACCACCGGAAAACCTTGGACTAC
TGGAAGACCTTGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGA
CTACCGGAAGACCTTGGACCACCAGGCGTTCCGGATGGTGGACCACACAC
CGCCCACGGCGTATATTGAAGTAAGAAATTTAAAAAATAATCCAATATTC
CCAAATTTATGTCCTCAATAGTGATTTAAGATATTTTTATCCCAAAATGG
GTTGTATTTGAAAATATACCATGTAATTTGATAAACCTTTGAAGCTAAAA
GATCATTAAAATATTTCTTTTTTAGGGGAAAATTCATCTTCTACATCGAC
GACAAGAAACGAAAGTAAAGACACTTCAAACAACTAATTTGTACCGTTTT
TTATCAAATCAATTCTTGGAAGTTGACCAAGATTAACTTTAGGTTTAGCA
ACGTTTTTTTCTATTTAATTATTTTTCTAGTAATGTTTGAAACGAAAAAT
GGCACCCTTTGAAAATATTTTGATTCATCATTGCTTGCCATTC Coding sequence (CDS) from alignment at scaffold_511:161012..163554- >TCONS_00069955 ID=TCONS_00069955|Name=TCONS_00069955|organism=Clytia hemisphaerica|type=CDS|length=5292bp|location=Sequence derived from alignment at scaffold_511:161012..163554- (Clytia hemisphaerica) GGGAAAATTCATCTTCTACATCGACGACAAGAAACGAAAGTAAAAAAAGA AATTGCGTCAGACAGCACCAAAAAACCTTGGACTACCGGAAGATCTTGGA CCACTGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAGATCT TGGACCACCGGAAGACCTTGGACTACCAGAAGATCTTGGACTACCAGAAG ACCTTGGACTACCGGAAAACCTTGGACTACTGGAAGATCTTGGACTACCG GAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACT ACCGGAAGACCTTGGACTACCAGAAGATCTTGGACTACCGGAAGACCTTG GACTACCGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGAAGAT CTTGGACTACCGGAAGACCTTGGACTACCAGAAGATCTTGGACTACCGGA AGACCTTGGACTACCGGAAGATCTTGGACCACAGGAAAACCTTGGACTAC TGGAAGACCTTGGACTACCGGAAGATCTTGGACTACTGGAAGACCTTGGA CTACCGTAAGACCTTGGACCACCGGAAAACCTTGGACTACCGGAAGATAT TGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCAGAAG ATCTTGGACTACCGGAAGACCTTGGACTCCCGGAAGATCTTGGACCACCG GAAAACCTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGGACT ACCGGAAGACCTTGGACTACCGTAAGACCTTGGATCACCGGAAAACCTTG GACTATCGGAAGATATTGGACTACCGGAAGATCTTGGACTACCGGAAGAC CTTGGACTACCGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGA AGACCTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGGACTAC CGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAAACCTTGGA CTACTGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGAAGACCT TGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAG ACCTTGGACCACCAGGCGTTCCGGATGGTGGACCACACACCGCCCACGGC GTATATTGAACGAAACCCAATCAAGGAAATGACGATGAGAAGCGAGTCGA TAAACTATTAGACGATATCAAAGAAGCTGATACCTTGATCAAGAACGAAA TCAAAACTTTGAAAGGAATAAATGAAGGTGTTCAAATTTTGCTGCCTTCT GGCAGTGATTGTTTTGACTGTAGGGGAAAATTCATCTTCTACATCGACGA CAAGAAACGAAAGTAAAAAAAGAAATTGCGTCAGACAGCACCAAAAAACC TTGGACTACCGGAAGATCTTGGACCACTGGAAGACCTTGGACTACCGGAA GATCTTGGACCACCGGAAGATCTTGGACCACCGGAAGACCTTGGACTACC AGAAGATCTTGGACTACCAGAAGACCTTGGACTACCGGAAAACCTTGGAC TACTGGAAGATCTTGGACTACCGGAAGATCTTGGACTACCGGAAGACCTT GGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCAGAAGA TCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGG AAAACCTTGGACTACTGGAAGATCTTGGACTACCGGAAGACCTTGGACTA CCAGAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGG ACCACAGGAAAACCTTGGACTACTGGAAGACCTTGGACTACCGGAAGATC TTGGACTACTGGAAGACCTTGGACTACCGTAAGACCTTGGACCACCGGAA AACCTTGGACTACCGGAAGATATTGGACTACCGGAAGATCTTGGACTACC GGAAGACCTTGGACTACCAGAAGATCTTGGACTACCGGAAGACCTTGGAC TCCCGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGAAGACCTT GGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCGTAAGA CCTTGGATCACCGGAAAACCTTGGACTATCGGAAGATATTGGACTACCGG AAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACCA CCGGAAAACCTTGGACTACTGGAAGACCTTGGACTACTGGAAGACCTTGG ACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATC TTGGACCACCGGAAAACCTTGGACTACTGGAAGATCTTGGACCACCGGAA AACCTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGGACTACC GGAAGACCTTGGACTACCGGAAGACCTTGGACCACCAGGCGTTCCGGATG GTGGACCACACACCGCCCACGGCGTATATTGAACGAAACCCAATCAAGGA AATGACGATGAGAAGCGAGTCGATAAACTATTAGACGATATCAAAGAAGC TGATACCTTGATCAAGAACGAAATCAAAACTTTGAAAGGAATAAATGAAG GTGTTCAAATTTTGCTGCCTTCTGGCAGTGATTGTTTTGACTGTAGGGGA AAATTCATCTTCTACATCGACGACAAGAAACGAAAGTAAAAAAAGAAATT GCGTCAGACAGCACCAAAAAACCTTGGACTACCGGAAGATCTTGGACCAC TGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAGATCTTGGA CCACCGGAAGACCTTGGACTACCAGAAGATCTTGGACTACCAGAAGACCT TGGACTACCGGAAAACCTTGGACTACTGGAAGATCTTGGACTACCGGAAG ATCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACTACCG GAAGACCTTGGACTACCAGAAGATCTTGGACTACCGGAAGACCTTGGACT ACCGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGAAGATCTTG GACTACCGGAAGACCTTGGACTACCAGAAGATCTTGGACTACCGGAAGAC CTTGGACTACCGGAAGATCTTGGACCACAGGAAAACCTTGGACTACTGGA AGACCTTGGACTACCGGAAGATCTTGGACTACTGGAAGACCTTGGACTAC CGTAAGACCTTGGACCACCGGAAAACCTTGGACTACCGGAAGATATTGGA CTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCAGAAGATCT TGGACTACCGGAAGACCTTGGACTCCCGGAAGATCTTGGACCACCGGAAA ACCTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGGACTACCG GAAGACCTTGGACTACCGTAAGACCTTGGATCACCGGAAAACCTTGGACT ATCGGAAGATATTGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTG GACTACCGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGAAGAC CTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGGACTACCGGA AGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAAACCTTGGACTAC TGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGAAGACCTTGGA CTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAGACCT TGGACCACCAGGCGTTCCGGATGGTGGACCACACACCGCCCACGGCGTAT ATTGAACGAAACCCAATCAAGGAAATGACGATGAGAAGCGAGTCGATAAA CTATTAGACGATATCAAAGAAGCTGATACCTTGATCAAGAACGAAATCAA AACTTTGAAAGGAATAAATGAAGGTGTTCAAATTTTGCTGCCTTCTGGCA GTGATTGTTTTGACTGTAGGGGAAAATTCATCTTCTACATCGACGACAAG AAACGAAAGTAAAAAAAGAAATTGCGTCAGACAGCACCAAAAAACCTTGG ACTACCGGAAGATCTTGGACCACTGGAAGACCTTGGACTACCGGAAGATC TTGGACCACCGGAAGATCTTGGACCACCGGAAGACCTTGGACTACCAGAA GATCTTGGACTACCAGAAGACCTTGGACTACCGGAAAACCTTGGACTACT GGAAGATCTTGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGAC TACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCAGAAGATCTT GGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAAA CCTTGGACTACTGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCAG AAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACCA CAGGAAAACCTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGG ACTACTGGAAGACCTTGGACTACCGTAAGACCTTGGACCACCGGAAAACC TTGGACTACCGGAAGATATTGGACTACCGGAAGATCTTGGACTACCGGAA GACCTTGGACTACCAGAAGATCTTGGACTACCGGAAGACCTTGGACTCCC GGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGAAGACCTTGGAC TACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCGTAAGACCTT GGATCACCGGAAAACCTTGGACTATCGGAAGATATTGGACTACCGGAAGA TCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGG AAAACCTTGGACTACTGGAAGACCTTGGACTACTGGAAGACCTTGGACTA CCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGG ACCACCGGAAAACCTTGGACTACTGGAAGATCTTGGACCACCGGAAAACC TTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGGACTACCGGAA GACCTTGGACTACCGGAAGACCTTGGACCACCAGGCGTTCCGGATGGTGG ACCACACACCGCCCACGGCGTATATTGAACGAAACCCAATCAAGGAAATG ACGATGAGAAGCGAGTCGATAAACTATTAGACGATATCAAAGAAGCTGAT ACCTTGATCAAGAACGAAATCAAAACTTTGAAAGGAATAAATGAAGGTGT TCAAATTTTGCTGCCTTCTGGCAGTGATTGTTTTGACTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00069955-exon-scaffold_511-1575043694:163273..163554 | TCONS_00069955-exon-scaffold_511-1575043694:163273..163554 | Clytia hemisphaerica | exon |
TCONS_00069955-exon-scaffold_511-1575043694:162925..163035 | TCONS_00069955-exon-scaffold_511-1575043694:162925..163035 | Clytia hemisphaerica | exon |
TCONS_00069955-exon-scaffold_511-1575043694:161385..162501 | TCONS_00069955-exon-scaffold_511-1575043694:161385..162501 | Clytia hemisphaerica | exon |
TCONS_00069955-exon-scaffold_511-1575043694:161012..161229 | TCONS_00069955-exon-scaffold_511-1575043694:161012..161229 | Clytia hemisphaerica | exon |
TCONS_00069955-exon-scaffold_511-1510915933:163273..163554 | TCONS_00069955-exon-scaffold_511-1510915933:163273..163554 | Clytia hemisphaerica | exon |
TCONS_00069955-exon-scaffold_511-1510915933:162925..163035 | TCONS_00069955-exon-scaffold_511-1510915933:162925..163035 | Clytia hemisphaerica | exon |
TCONS_00069955-exon-scaffold_511-1510915933:161385..162501 | TCONS_00069955-exon-scaffold_511-1510915933:161385..162501 | Clytia hemisphaerica | exon |
TCONS_00069955-exon-scaffold_511-1510915933:161012..161229 | TCONS_00069955-exon-scaffold_511-1510915933:161012..161229 | Clytia hemisphaerica | exon |
TCONS_00069955-exon-scaffold_511-1491911889:163273..163554 | TCONS_00069955-exon-scaffold_511-1491911889:163273..163554 | Clytia hemisphaerica | exon |
TCONS_00069955-exon-scaffold_511-1491911889:162925..163035 | TCONS_00069955-exon-scaffold_511-1491911889:162925..163035 | Clytia hemisphaerica | exon |
TCONS_00069955-exon-scaffold_511-1491911889:161385..162501 | TCONS_00069955-exon-scaffold_511-1491911889:161385..162501 | Clytia hemisphaerica | exon |
TCONS_00069955-exon-scaffold_511-1491911889:161012..161229 | TCONS_00069955-exon-scaffold_511-1491911889:161012..161229 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_511 | supercontig | scaffold_511:161012..163554 - |
Blast
The following BLAST results are available for this feature:
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