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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069960 ID=TCONS_00069960|Name=TCONS_00069960|organism=Clytia hemisphaerica|type=transcript|length=777bp
GCCTTCTAAAAAGTCAAGCATGGGAACTCCCTTTATCGTTTTGCAAGAGT
CAAAAAGCAAATACGCCTACCTGCTGCTAGAAGTAATTTCCAATCGACCG
CAAATGCGAATTAAGAGATTATCAATATTCAACTTATTCCACATGGCTCC
GTAATATTCATCAATTGTTGTCGCTTCCTGAGTTTGAGAATTTTGTTTCG
ATAGCCGATATGTTTCAATGGCACTATCTTGATACGTTTTCAATATCact
gaatatattttcaattgtATTGCTGATTCCTGTAGAATGAAGAAAAGAAG
TTTAAGAATGTTGACTCCGAAGGACAATAAAATGTTTCTGGTGATTTTCT
ATATATTGATAGGAGAGTTGGAGGCTTGTATTGCCTTTGTAAAACCCTGA
AGCCTAGTAAAGCCCTCAATAAAATGTTTAGATCGTGTGATGAAATCGAA
ATATACATACCGCTGTACTTCGGCCGGCTCTGAATACTGGCAACTCAACT
TTCCATAAAGCAGATTGATTGCAAAGTCTTGATTGACCTTCGATTGCAGC
ATCCAGTGCGACTTTACCAATTGATTTACGTACTGTATTTAACTTTGGTT
CGAATTCTCGCATTCTTTTCATATGGTATTTATCATCATCACCACACTCT
TTCCGGTTAAAGCCATCATCGTTGGATCTGGTTTGTCTAACAGGCAAGGC
TGCTGCCTGCACTACTAACAGTAATAATATAActaaaaaaaaggagaaaa
taaatattaaaagattgaatttcataa Run BLAST on NCBI transcript from alignment at scaffold_511:265798..272013- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069960 ID=TCONS_00069960|Name=TCONS_00069960|organism=Clytia hemisphaerica|type=transcript|length=6216bp|location=Sequence derived from alignment at scaffold_511:265798..272013- (Clytia hemisphaerica)
GCCTTCTAAAAAGTCAAGCATGGTAAGTTTATGACATTGTTTTTCTTCCT
CAAAACTGCGTATTTCATGCATTTTTACTTGAAAAAAAAAATGGTATCCA
TGGCTCAATGTGGGTCATTATGTGTACATTGGATCCAACCAACGCTTTGT
TACGGCAAATATAAGTTTGAAGATCCAAAAAAGGATATATTACTGTGCTT
GTGAACTCTGTATTACCTAATTAATCAATGAATTATCAAACAAGACAATC
ATTCCTTGTTTTTTTATTCTGCTCATTTTCCAGGGAACTCCCTTTATCGT
TTTGCAAGAGTCAAAAAGCAAATACGCCTACCTGCTGCTAGAAGTAATTT
CCAATCGACCGCAAATGCGAATTAAGAGGTGGGTGTTGAATTTTTCTTCA
TTCTTCTATTTTTTCCCTTTGGTTTCCTGTTTAACAATTGATGTCGAACA
CTAGGAAGCTTTTTAGATAGTTCATGATGCATGATCTTCTAAACATCCCA
ATAAAATTTGATTATAATTTGATTATAATTAAAAGAGATTTTTTTTCCTA
CAATAGTTTAGAATATTGTCCCAAATTTTCACTAAAATTCCTCCTGATAT
CTAGATGATTGGGCGAAGATGATAGTATCTTGCGTTTGTTGAGAAATCAT
CAACTACCTCAACTACTCTTCCCAGCGGGCACACAACGTTGTTTCAACGT
TCATGTAACGTTATATGGACGTTGTGAACGTTAGATAAACGTTGAAACAA
CATTGTGTGCAGGCTGGGTTCACATATAATGCACTCAATAACGTAGATAA
GACGTAAAGACCACGAACATCAAGATATTAGCTTGAAAAGGAACCCTAAT
TTCTTTTCAGAAACTAGTATAATTAATTCTTGCAGAATTTAACTGGAGCA
TTGTGCAATCCTAATGATGATAGTCCTGATTTAGACAAGATGGATACATT
TCGAAATATTGTAAAGTATCTTTGCTAATAAAATAAGGGATTGGTAAATT
TCACGAAGATTTTGCAATGGACTGCTGAAAGGCTGGAAAGTTATATCGAG
AACCTTCTAAAGCACAAATTTCACCATTGTTTGCAAAGTAACTATGATGA
ACCTAATTAATTAAATGGTGCAACTTTTATTACAAATTATACCTTAAACG
AACATTAAACATGTGCTCCTCAATAACTTCAGTGTAATTGGTACTATAAT
TAAGTTGCCTGCCAAATTCCCTTACTCTCTTTTCCGTAATGGCTACTCAT
GAATTAGCAAGGCGGATTATAAAAAAAATAGTTTTATTGGAAAAAAAATG
GAGTAAAGCTTAGTTTAGACCATCCTGAATCAGGACTTTGTTAATTTATC
TTCGCTAAACTAAGTCATAGGTGTTTTTGTTTACTTTTTCTTTCCAACCA
CTGAGACTGATGATTTTTTCATCCCTTACAGTAGCCCGGGATCCACTTAA
AGCTTTTTACTGGACTGAATAGCGCGATTAAGTGGCCCGGTAGTATATGG
TAATATGCTTTTGCTTACAGAATTAAGTTATTTTTTGAAGGTAAAAACAG
TATGAAGGAATGTTTTTATTTGAGAATAAGGGATTGCAAATCTGTTAATC
ACGTTTGTTTCTCATTTTTGATTATATCTTTCAACTCCAAGTAGTTTTTT
GGATTTTTAACATTTTTTTTCAAAATGGCGACCTCGCCAAATGCTCCTAG
TCTACTTCACTGGACTAAGCGTCATAAAAAATTATCAAAAAGCAAAGTTC
AGCCAAAAGTAGACTCTAGTCTACCCTTACAGGGACTTTTAGCATCCTTA
AGGGCGGCACATAGCTGTACCCTTCACTTTTCAGGTACCCCCCTCCCCGA
GCAAAAAGTACTTGTTTATTAATTAATCTAGGGAATTATTATAAGCCACG
GATAGTACAAAAAGGATTTAAAACAGGTCACAAAGGTACTTTACTTTCGA
TACTTTTCACCATTCTTCTATAAAAAATTTTAATCTTGGGTCCATCACTT
TTGCAATTTTAAAAGTTTAAGTAAAAAGTATAGAGTGTGTTAATGGGGAA
ATTTATGTGGACTTTTTACACTGAAAGATTAAAGAGATGATTAATCATTG
AGTAATTTTGGCATGCACTGATCTACGTCACATATCTTTCTATGGACTAT
GGACTTATTTCCTGTAAAACTCATTCAAAATAATTGTAACCTGAAGTTAC
TTTATGTGAAATTTATATATAAAATGATACATCTATCCGCAGACACGTAT
ATCGTCCTTCCCAGGACTCATCAGTGCAGCTCGGGTAAGCGAGCATAGAC
TGCTGTTGTCACCAGAGTGCTCAAAACACTAAGTGGTGAGCTTCGAAGCA
GTATGTAAAATAATAGCAGTTTGCATACAAAATTTAACTAAAGCCAGTTT
ATTTTTAAAAAGATCGTTAAAATCTGTTAAGGCACGCTTGTACTGATTTT
TCAGCACTTTTAGCTTTTTTTATTAGACCTTTCACCAGATTGAAAAAAAT
AGGTATCTTTACCCAAAGGATTTTCTTACTGTCGCCATTTTCAAAAAGCT
CACTTATTTTGACATTTTTGGTCTCATCTATTACATTACAAAAGACAAAT
AACAACCTCGTATTTAAAAACTAAGCAATTCATATACGCTGCTTTTCAAA
CTATACCGTGTAACTTCCAATAAACCCCCTTTTTTTAAACGCCTCCTTGA
ATGAACGCCTCTCTTAAAAACCCAAAAACTTAATAAACTCCCGGGCGTTT
ATTTGAACTAATACGGTAGCCAATTCTTTTTAGCCTTGACTGTTCTTTCA
GGATTTTATTATGTATTGGTTGTGGTTTAGTTCATCTTTTTATCCATCTC
CAAAGTTTGATCTTAAATCAAATCTTTCCAAATTATTCAGAAGAAAAGTT
TTTTTTGGCAGATATCAATGTCGAATGTAGGTGGTATAAAGAGCAGAGGA
CTTCTACATTTGGACTTTGGAATTTTTTGATTGTTTATTTCCTGAGGTTA
ATCTTGAGAATGTCTTTCTTCTGATTGTCGTGTAGAGAATTTTAGTTTCG
AAGATGGGCCGTGGGTTTACGGTAGTAAAAGTGAAAGGGGTGCGCTATGA
TGCCGAGGAGACGCCATCAAACATTAGAAGGGTTGTTAGTTTACGCTACT
CTAATATGTCTTATGATGATTTCATATCATACACTTTTTTTTAAGAACCA
GTAAAATTTTGCTGAGGTTCGGCTGTTCTTATTTATAGGTTGTAATTGAG
GTATTTTAGGCACTATACCCGATTCTTACTACTTTGACCCCTAAATTGCA
CGAAATTAGATTAATTCCAGGCTTAGCATTGCTCTTAAATTGTTCTTATC
TTGGAGATTTTGAGCCTCATTGTTCTTAGAAAATTGTTCTTATAAAGAAA
TAGTGTACCATAATTGACGTCAGCTAGTTGTCTGATACAGGGGTGTTTTT
TTTTAAGTAACAGGACTGTGTCTAATGTTGTAAATCAGTCTTGTTTTCTT
ATAAAAGGATAAAAATCCTTTATCTCTTTTGAAGCGGGTTCGCTTTGTTG
AAGAAATTTATCATTTAAATCCCATTCTGGTCCTCAATTTTATCATTTCG
ACTTTACAGACTTCATTTGGATGTAATGTACAGACCGTTTTAATTAGTGT
TATATGTAAATCTGTAAATTACACTCGTAGTAGACAAAGTCGACAACTAG
GAAGTGAAAGTAAAGTTAAGAAAAGAATTCGCTGTTTTGTCAATTAGGTG
ATTTCCAAAGCCTTCTCTCATCTTCAATAGAAAATGTTACATTACTGTAA
AAATCAATTTGCTTAGTTTGGTTGTCCCCTTACTTTTACTATATGCTAAA
AGTTTAAACATCTAGCAGGGTTTAAAGCAGTTGCAACTTTTTCTTCCCTT
TTTTACGATGACATCGAAAGAAAAAAACCCAGTTCATATATTTATGATAT
AGGAGGGCATTATCTTGGCAAACCTCACTTCATTACATTGCTTGTAATGG
ACTTACTTTACTAGTAATTAGCTTGAGCAATTAAAAAAAACGCTCAGAAA
ACGTTTTGCTTCAACTATTAACAAAAAATAGATAATCAAAAAAGATACAT
GATAATCTACACTAAGCTTAAGTATTTCTGTTTGACACAAAAAAACTTTG
ATGCAGGAGTAAAAGAACTACTTCTAATGTGTCTGACGACTCGATTTGAG
TTTTCAGATCCTACTGCAGATATCATATTATCTTTTACACACTAGATAGA
CTAACTGCTCAAAGATTTCCCGTGGAAGTGTATCCAGTTTATTTAGTCAA
CTAGCCCGCCATGTTATTTTATAACTTACCTTAGACTTTCGAACGTTCGA
ATTTCAAAACATTCAGCGGCTAACGATCAAAATATATGAATATAAGATGG
CGGACTAGTCAGTTCTAAAACTAGACACAACTTTTATGTATGGAAAGCTC
GATCCAGTCAAAATGTTATAGATCAGTGAGTCCTATGTTTTATGGCGGCT
AGAATGTATTGGTAAAACATTGATTAGAAAATGTTTTCTTTTGTTATTTA
CAATATATTTTTTTAATTTTGTTAATTTTCTTTTACTAAAAACTCTCTAT
TTATAAATAATTTTTCTTTTAAATTTTTCTTTTAAATACTAGTTTCATAT
CTTTCCACGATTTTAATACTTTTAAATTCTCTTAAATTTGTAAAATATTT
GTAAAATTCATTTTTAACTTTTTCGTATAAATTGTACTATAAAATAAATA
AATTTTAAGGAATAAAAAAAAGTAAAAAATCTCTAGTCTATATAAAATAT
ATGTACACCCTTCGAGGTATAAATTATTTTCTAAGATAAATATAAATATT
TACAGTATTCACAAGGTACAAAAATATATTTCTATTTTGTTTCTAAATAA
ATAAATAAATAAATAATGCATTTTAAATATAATAGAAAAAAATAAATAAA
CGTTAATTTTAGGTAAAAGTTATTAAAAATCAACTATGGTGTTCTCTGTC
ATGTAAATCAATCCTGTTTCTGACTTCAGCTATCAGATTATCCCAAAGGA
GTTGCAGGTCCTCAGCTTGCCGTCTAAGGATAGGTACTAGATGGTTCTTC
ATGTGTTTACATTTATTTTGTTGGCGTTTGAATCCGTGCTCTATATCCTT
CACTATTTTGGATGTTGCTTCCTTGATCTTGTCATCATTGACTTCATCTC
TGTGGAGGCCACAGTAACTGGTGATTTTCTGTAACGAAATAAAGAAATTA
ATTTGTTATAAATTTTGAAATAGGTACTTGGAAAGTTTTGGCAAAGTTTG
AAATAAGTCATCTTAGCTGGTTTGTTTTCCTCTTGTACGATACACCTTCA
ACGAGCATAAACCTTCTTCTAAAGCAATCATTCCAAAATAGAACAAACAC
AACGCATCGAATTCCACTTCCTGGAGATCATGTTTCTTAGTAAAGGACAT
TTTTAAGAAATGACAGAAATAACATTGTAAAGGAAAGAATAAAACTTACC
AGAAAAGTTTCATCGAGATACTGAATAATCAAACGCACGTCGATTCTCTC
TTTCAGATTATCAATATTCAACTTATTCCACATGGCTCCGTAATATTCAT
CAATTGTTGTCGCTTCCTGAGTTTGAGAATTTTGTTTCGATAGCCGATAT
GTTTCAATGGCACTATCTTGATACGTTTTCAATATCACTGAATATATTTT
CAATTGTATTGCTGATTCCTGTAGAATGAAGAAAAGAAGTTTAAGAATGT
TGACTCCGAAGGACAATAAAATGTTTCTGGTGATTTTCTATATATTGATA
GGAGAGTTGGAGGCTTGTATTGCCTTTGTAAAACCCTGAAGCCTAGTAAA
GCCCTCAATAAAATGTTTAGATCGTGTGATGAAATCGAAATATACATACC
GCTGTACTTCGGCCGGCTCTGAATACTGGCAACTCAACTTTCCATAAAGC
AGATTGATTGCAAAGTCTTGATTGACCTTCGATTGCAGCATCCAGTGCGA
CTTTACCAATTGATTTACGTACTGTATTTAACTTTGGTTCGAATTCTCGC
ATTCTTTTCATATGGTATTTATCATCATCACCACACTCTTTCCGGTTAAA
GCCATCATCGTTGGATCTGGTTTGTCTAACAGGCAAGGCTGCTGCCTGCA
CTACTAACAGTAATAATATAACTAAAAAAAAGGAGAAAATAAATATTAAA
AGATTGAATTTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069960-exon-scaffold_511-1575043694:271992..272013 | TCONS_00069960-exon-scaffold_511-1575043694:271992..272013 | Clytia hemisphaerica | exon |
| TCONS_00069960-exon-scaffold_511-1575043694:271636..271730 | TCONS_00069960-exon-scaffold_511-1575043694:271636..271730 | Clytia hemisphaerica | exon |
| TCONS_00069960-exon-scaffold_511-1575043694:265798..266457 | TCONS_00069960-exon-scaffold_511-1575043694:265798..266457 | Clytia hemisphaerica | exon |
| TCONS_00069960-exon-scaffold_511-1510915933:271992..272013 | TCONS_00069960-exon-scaffold_511-1510915933:271992..272013 | Clytia hemisphaerica | exon |
| TCONS_00069960-exon-scaffold_511-1510915933:271636..271730 | TCONS_00069960-exon-scaffold_511-1510915933:271636..271730 | Clytia hemisphaerica | exon |
| TCONS_00069960-exon-scaffold_511-1510915933:265798..266457 | TCONS_00069960-exon-scaffold_511-1510915933:265798..266457 | Clytia hemisphaerica | exon |
| TCONS_00069960-exon-scaffold_511-1491911889:271992..272013 | TCONS_00069960-exon-scaffold_511-1491911889:271992..272013 | Clytia hemisphaerica | exon |
| TCONS_00069960-exon-scaffold_511-1491911889:271636..271730 | TCONS_00069960-exon-scaffold_511-1491911889:271636..271730 | Clytia hemisphaerica | exon |
| TCONS_00069960-exon-scaffold_511-1491911889:265798..266457 | TCONS_00069960-exon-scaffold_511-1491911889:265798..266457 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:265798..272013 - |
Blast
The following BLAST results are available for this feature:
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