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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069962 ID=TCONS_00069962|Name=TCONS_00069962|organism=Clytia hemisphaerica|type=transcript|length=1526bp
CAGGGAGAGTACCCCCAGCAGAGTATATTTTTCCTGGATTAAGATCAgta
tcaatttattttcaaaactttctttcaaaaacgAAGATGAACGAGTTTAC
AATATAAGTTGGGCTACATAAATCTAGCTTCTAATTACATGAAATGATGC
TAAGGTTTATATAAAATAGATTTGCCACATTTTCCAAAGCAACGCATAGC
GAAAACATGATTTTTCAGCTTATTTCTTTAAAGCACGAAGTCGTTTTTAT
GAtgaatttgatttcaaaaaaaggCATTGAAATGAATATAAATTCAACTG
gggttttcaattttgtttgcgTGGTGTTTATATAAAattcaaatactaaa
aaattAGTGTTCTTTATGATACAGTTTTTCACGTCGTTAAGACGTTCAAT
GTCCCCAGTATGGATTCCATCCAGCACCTCCACAACAAGTATGCCCGTAA
TGTGGTAATACGATCAAATCTCCGCTATGGCGACGTCCGTGACGCCCACC
ATGGCTTCGACCAGATAAATGGATGTTATGATGGGCTGTTTCTTGATGTG
TTGGGTGCAACAAAACTGGATGGTGGCTGTGGAATTTTCCTGGAAATCCG
AAACCAACATTGTTACCGTATGGGTAAGTTAAACATGGCGAGTCTGGTGA
GTTGTATTCGGGACATCCGATTGGACGATGATGAATATCATGGAAACCAC
CACAATCACCGCCTCCACAACCAACACCGTATCCGTTACCAAATCCCAAA
CCTCCACAATCTGAATGACCACAATCAGCTGCATCCCAGTTTCCACCGAA
GCCTTGGTGACCGTATCCACCACATCCAGCACCTTGACAACCACCACCAC
GTCCTCCGTGTACTGGGAAGTTGGTAGTACAATGATCACCTTCACATTCT
CCTGGCAAGACTAACAGACGATGTAAATGATGACCGTCTTTTGGGATGTC
TTTTCTTCGCGAGCTGGTGTCATCCTCATCATCTTCAGTAATGATCAATT
GACGTGCTTTGGCTTTTTGTGGTAACGTCAATGCAGGTGGGTTAGGTCCT
GGATATTTTGGACCAGTTGATTGAGCTGGTGCTCCTAGGGCTGGTGCACC
CATGTTTCCGTAGCCTCCATAGCCACCACCCACACCATAACCACCGTAAG
CTCCACCATATCCTGCTCCCATTCCATATCCAGCATGACCGTACCCTTGA
CCATAACCTCCCATACCGTAGCCACCATCCATACCATAACCACCGTATCC
TCCCATTCCGTAGCCTTGTTGACCATAGCCTCCATAGCCACCCATACCTC
CATATCCAGTATGTCCGTAACCGCCCATTCCGTAACCTTGTTGGCCGTAA
CCACCCATTCCGTAACCTTGTTGGCCGTAGCCGCCCATTCCGTAACCGTG
TTGGCCGTAGCCGCCCATACCGTAACCTTGTTGGTCGTAACCACCCATTC
CATAACCTTGTTGACCATAGCCTCCACCCATTCCGTAACCTTGACTTCCG
TAGCCTCCATATCCGCCACATGCTCC Run BLAST on NCBI transcript from alignment at scaffold_511:454276..456173- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069962 ID=TCONS_00069962|Name=TCONS_00069962|organism=Clytia hemisphaerica|type=transcript|length=1898bp|location=Sequence derived from alignment at scaffold_511:454276..456173- (Clytia hemisphaerica)
CAGGGAGAGTACCCCCAGCAGAGTATATTTTTCCTGGATTAAGATCAGTA
TCAATTTATTTTCAAAACTTTCTTTCAAAAACGAAGATGAACGAGTTTAC
AATATAAGTTGGGCTACATAAATCTAGCTTCTAATTACATGAAATGATGC
TAAGGTTTATATAAAATAGATTTGCCACATTTTCCAAAGCAACGCATAGC
GAAAACATGATTTTTCAGCTTATTTCTTTAAAGCACGAAGTCGTTTTTAT
GATGAATTTGATTTCAAAAAAAGGCATTGAAATGAATATAAATTCAACTG
GGGTTTTCAATTTTGTTTGCGTGGTGTTTATATAAAATTCAAATACTAAA
AAATTAGTGTTCTTTATGATACAGTTTTTCACGTCGTTAAGACGTTCAAT
GTCCCCAGTATGGATTCCATCCAGCACCTCCACAACAAGTATGCCCGTAA
TGTGGTAATACGATCAAATCTCCGCTATGGCGACGTCCGTGACGCCCACC
ATGGCTTCGACCAGATAAATGGATGTTATGATGGGCTGTTTCTTGATGTG
TTGGGTGCAACAAAACTGGATGGTGGCTGTGGAATTTTCCTGGAAATCCG
AAACCAACATTGTTACCGTATGGGTAAGTTAAACATGGCGAGTCTGGTGA
GTTGTATTCGGGACATCCGATTGGACGATGATGAATATCATGGAAACCAC
CACAATCACCGCCTCCACAACCAACACCGTATCCGTTACCAAATCCCAAA
CCTCCACAATCTGAATGACCACAATCAGCTGCATCCCAGTTTCCACCGAA
GCCTTGGTGACCGTATCCACCACATCCAGCACCTTGACAACCACCACCAC
GTCCTCCGTGTACTGGGAAGTTGGTAGTACAATGATCACCTTCACATTCT
CCTGGCAAGACTAACAGACGATGTAAATGATGACCGTCTTTTGGGATGTC
TTTTCTTCGCGAGCTGGTGTCATCCTCATCATCTTCAGTAATGATCAATT
GACGTGCTTTGGCTTTTTGTGGTAACGTCAATGCAGGTGGGTTAGGTCCT
GGATATTTTGGACCAGTTGATTGAGCTGGTGCTCCTAGGGCTGGTGCACC
CATGTTTCCGTAGCCTCCATAGCCACCACCCACACCATAACCACCGTAAG
CTCCACCATATCCTGCTCCCATTCCATATCCAGCATGACCGTACCCTTGA
CCATAACCTCCCATACCGTAGCCACCATCCATACCATAACCACCGTATCC
TCCCATTCCGTAGCCTTGTTGACCATAGCCTCCATAGCCACCCATACCTC
CATATCCAGTATGTCCGTAAGCGCCCATTCCGTAACCTTGTTGACCATAG
CCGCCCATTCCGTAACCTTGTTGGCCGTAGCCGCCCATTCCGTAACCTTG
TTGGCCGTAACCACCCATTCCGTAACCTTGTTGGCCGTAGCCGCCCATTC
CGTAACCGTGTTGGCCGTAGTCGCCCATTCCGTAACCGTAACCTTGTTGA
CCATAGCCGCCCATACCATAACCTTGTTGGCCGTAGCCGCCCATTCCGTA
ACCTTGTTGGCCGTAACCACCCATTCCGTAACCTTGTTGGCCGTAGCCGC
CCATTCCGTAACCGTGTTGGCCGTAGTCGCCCATTCCGTAACCGTAACCT
TGTTGACCATAGCCGCCCATACCATAACCTTGTTGGCCGTAGCCGCCCAT
TCCGTAACCTTGTTGGCCGTAACCACCCATTCCGTAACCTTGTTGGCCGT
AGCCGCCCATTCCGTAACCGTGTTGGCCGTAGCCGCCCATACCGTAACCT
TGTTGGTCGTAACCACCCATTCCATAACCTTGTTGACCATAGCCTCCACC
CATTCCGTAACCTTGACTTCCGTAGCCTCCATATCCGCCACATGCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069962-exon-scaffold_511-1575043694:454854..456173 | TCONS_00069962-exon-scaffold_511-1575043694:454854..456173 | Clytia hemisphaerica | exon |
| TCONS_00069962-exon-scaffold_511-1575043694:454276..454481 | TCONS_00069962-exon-scaffold_511-1575043694:454276..454481 | Clytia hemisphaerica | exon |
| TCONS_00069962-exon-scaffold_511-1510915933:454854..456173 | TCONS_00069962-exon-scaffold_511-1510915933:454854..456173 | Clytia hemisphaerica | exon |
| TCONS_00069962-exon-scaffold_511-1510915933:454276..454481 | TCONS_00069962-exon-scaffold_511-1510915933:454276..454481 | Clytia hemisphaerica | exon |
| TCONS_00069962-exon-scaffold_511-1491911889:454854..456173 | TCONS_00069962-exon-scaffold_511-1491911889:454854..456173 | Clytia hemisphaerica | exon |
| TCONS_00069962-exon-scaffold_511-1491911889:454276..454481 | TCONS_00069962-exon-scaffold_511-1491911889:454276..454481 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:454276..456173 - |
Blast
The following BLAST results are available for this feature:
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