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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070019 ID=TCONS_00070019|Name=TCONS_00070019|organism=Clytia hemisphaerica|type=transcript|length=2260bp caaaGTTAAATACACAAAGAAATAAATCATGAATTTGTTGTTTTAAATGG GTCATGTGATGTGGAAATGCCAAGAGCAGAAAATACTCCTGCAACATCAA TCAACTCCAAAAACACTTCAGTGAGTGCCAGTGCTGTTCATCCTACTTGA TTACAGGCTAGTTAAGAGAAATCCAGTCTACAAAATGAACGTGCAGTTGA TCATTTATTCACATCCACCAATCGCTGCAAAGCATCTCTCTTCATCAATA CAGGAGAAAATCGAACTATCCACGTGGTACATTATGCCCAACGAGAGCAA GACTTGTATACACAATCAACAGAGGATGAAAGTTATGAATCTAAAGTTAT GTTATTCTTTATTCACGAAGTTGGTGGAACTATACAAATGTGGGAACCTC AGATACATTATTTCCTTACTCTTGGTTATGAAATTATAGCATTAGATTTG TTGGGGCATGGTCAAAGTGGGAAACCACGTGTATATAATGCATATCAATT CACAGAGCTGGCCTCTGatgtaatgtttatttttgatcGATTTAGTAAAC GTAGGAACGTTTTGATTGGACACTCTTATGGGAGTTCATTTTGCACAATG TTATCGAAAGAACGAGCACGTAAAGTTTGTAAAACTGTTTTAATTTCTGG TGGAGGACCAACATTATTGATGCCAGATCGTTGTAGTGCTTTTTGTTTAC CATTACTGTACCTTTCTCTGTTTGTATACGAAAAAGTGTGGTCAAGATGT TTCAAAGAATGGCATTTCATgaagaaacaagtgatactgtTCGTCAAAAG ATTTCAACTTTTGAGATTTCATCTTTCGCCCTTAAAGCCATCATGCAAGG ACAGAACTGGTACGAGTCAACAGAGGAATATCATGCTAGTTTGATCTTAC CTGTACTGTTGGTTTATGGGAAAGGTGACCAGTTTGTTACTCTGGGTGAA GAACAATGGATGCAAGAGACGATATTTGGTGCAGACTTGGAGGTTATCGA AGGCGCTGGTCACATGGTCATATTGGAAAAGCCTACACACGTCAATGATG CTATTCACCGCTTTTTAAATCGTGATTCATCCACATGGTCATCCCACCCT GCTCCTGAAGAAAGACCGCCCGGACGTGGGGCGGCTTTTCAAAGTCCGCA ATTGCTGGAGAATTCTGAAGCATCGGTTCGTTCTAATGGTGGACGACTTT CACGTTTATCGCGCACTTCAATACGCAGTAAGACTATGATGTAAGAAAAG GTGGAAGATTTTAACGTTGGAGCGGGATATTGTAACCATTCTCAATAATT TAATGCTTTGGATAACCAGTACTGCAACTCTTTGCCAGCTGAAATTTTTT GACTATATTCTACGAATGCGCAACAAAGAAAAGGGTGCGGAGAGTCTGAC ACTTTGAtcaaatgattattttttcttacggttgtattttattgttaata ttcaattgaatatttttaactGTATCATAAACTCATTTAACTCATATTTA AGAGAATGCCGAGTATaaacttatctggcacccagatggtgaaattttca ccCGACacactaaagctctgaaggtcaggaaaattttcaacatctggaag gttaaGATTACGAAATTTGGCAAGatcgcgtcaaggattttgccgccaga ggtctggtaacccagccctcgttttaggGGATTGgtgggtccaaccgaaa tatttttaggtttacgGGCAAAGGCTGTTGAAAACGActgggatgcggca catcaaaggccgactatcattcttctccgatgggaaattggcccgcttcc tttagagctttagcgtggatggccgccaatccgccatcggaatatcagat aaagtaTAAACCCATGGTATAGACATCGGGTTAAGACCAAATTCTAAAGT CGCGGACATCGTCATTGGTCTTTTAAAATGTGCATTACTATGTTTCTAAT TAATCTGCGAAAAATTAAGAAGtttgtttgaatttctttttttcaatatc caaaAATAAGTAGATTTTACTTAAACTTGAAACGAATTTCTAGTAACGAT TTTTTTGACTGACGATCGTAACAAAAAGTTgcgtgaaactttgagtatca aACAATTCTAATCTCGACTTCATTTTATTGTGTAAAATGCTTCCTCCGGG TCAAGAACTctcttgctgaagaagatataagcaacttaagtAGATTTTAC CAATGAAGCCTGAATCCGCAAAATCGGCGAAAATCTATCCAACTTTAGAA ACAATATCAT Run BLAST on NCBI protein sequence of TCONS_00070019-protein >TCONS_00070019-protein ID=TCONS_00070019-protein|Name=TCONS_00070019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MLFFIHEVGGTIQMWEPQIHYFLTLGYEIIALDLLGHGQSGKPRVYNAYQ FTELASDVMFIFDRFSKRRNVLIGHSYGSSFCTMLSKERARKVCKTVLIS GGGPTLLMPDRCSAFCLPLLYLSLFVYEKVWSRCFKEWHFMKKQVILFVK RFQLLRFHLSPLKPSCKDRTGTSQQRNIMLV Run BLAST on NCBI transcript from alignment at scaffold_512:71051..75089+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070019 ID=TCONS_00070019|Name=TCONS_00070019|organism=Clytia hemisphaerica|type=transcript|length=4039bp|location=Sequence derived from alignment at scaffold_512:71051..75089+ (Clytia hemisphaerica) caaaGTTAAATACACAAAGAAATAAATCATGAATTTGTTGTTTTAAATGG
GTCATGTGATGTGGAAATGCCAAGAGCAGAAAATACTCCTGCAACATCAA
TCAACTCCAAAAACACTTCAGTGAGTGCCAGTGCTGTTCATCCTACTTGA
TTACAGGCTAGTTAAGAGAAATCCAGTCTACAAAATGAACGTGCAGTTGA
TCATTTATTCACATCCACCAATCGCTGCAAAGCATCTCTCTTCATCAATA
CAGGAGAAAATCGAACTATCCACGTGGTACATTATGCCCAACGAGAGCAA
GACTTGTATACACAATCAACAGAGGATGAAAGTTATGAATCTAAAGTTAT
GTTATTCTTTATTCACGAAGTTGGTGGAACTATACAAATGTGGGAACCTC
AGATACATTATTTCCTTACTCTTGGTTATGAAATTATAGCATTAGATTTG
TTGGGGCATGGTCAAAGTGGGAAACCACGTGTATATAATGCATATCAATT
CACAGAGCTGGCCTCTGatgtaatgtttatttttgatcGATTTAGTAAAC
GTAGGAACGTTTTGATTGGACACTCTTATGGGAGTTCATTTTGCACAATG
TTATCGAAAGAACGAGCACGTAAAGTTTGTAAAACTGTTTTAATTTCTGG
TGGAGGACCAACATTATTGATGCCAGATCGTTGTAGTGCTTTTTGTTTAC
CATTACTGTACCTTTCTCTGTTTGTATACGAAAAAGTGTGGTCAAGATGT
TTCAAAGGtaaaacctttttctttttccgtACTTTGATGTTTGAAGAAAA
CAGGTTTCTGGATTTCAACCAGTAAATGTGGGAAAGCTATTTTAAAAGAA
GGTTTGCATATAAATCAAAATAGTCACTGGGAAACCTGTTACCTCGTTTT
ATTCTTGTGAAAAGCTTTCtagtaaatttttcatttttatttttcttccc
aAGGGCTTAGAATATATAAATTAGATTGGatcattttacaatttaattGG
GTAAGTAACGTAAAATTCAACGTTTTTAAAACGGTAAAATAATTACTCCA
TTTTTCAGAATGGCATTTCATgaagaaacaagtgatactgtTCGTCAAAA
GATTTCAACTTTTGAGATTTCATCTTTCGCCCTTAAAGCCATCATGCAAG
GACAGGTAAAGTTTGAAGATCGAGTCTTATATAAATAAAAGGTTTACTAG
GCCATTGCATCGATGTCATCTGACATCAAAACAACGATCTCAACTGAGAA
CGTTTGTTTGTAAACCTGATGAAGACCTAAACTAAGGAGGTCGAAAATAT
TGAATTTATATGAAGAACGATATAGAAATAATTCAAACATTCTCATCTAA
AGTATGACAATCCAAGAAGTGAAGATAGTATCTTTTTCATTGAATGTGGT
TGAAAGTGGTTTTGGTGGTTTTAGTGGTTGAAGTCTCTTATAGAGGGCAC
GGGGAGGAGGTGCTGAAATTCagcaaaaatctaagaaaaggATTAGTGAT
AAGTCGAGAAAAAGAGCCGATACTCGTACAAGccacaaaaaaaataagaa
aaagattgATGTTGATTTAAGGAAATACTGCTCTAAACGGCCTTCAATAC
GTAATAATACATACAAAAGATTCTAATAGCCATTGACTGGatgatatttt
gttttttctcacAGAACTGGTACGAGTCAACAGAGGAATATCATGCTAGT
TTGATCTTACCTGTACTGTTGGTTTATGGGAAAGGTGACCAGTTTGTTAC
TCTGGGTGAAGAACAATGGATGCAAGAGGTAACTATCCCATAATGCATTT
TGTTCTACATTTTGTTCCATACTTAACACGTTTGATGTAAAGCCTTTTTA
AGAAATCTAAAACTTAACGTCTTGAAATTCCATCGAAATTTTGACTTTCA
CAGGCTCCTGTTGTCCCAGTTTTACTTCAAATGCCTTCAGTTCAGATTGT
ATACCAATCGAAGCGAATTTTACGTAAGGTTTTAAAAATGtagtaaaatg
tcaaaatgttttgtatcaaaagttatggccctTTGAAGTACAAGCGGTAT
TTTGACCCCTCTATTACGAGTTTAGTCGTACATTAGCTTAGACAGGGGTG
AAGAACGATctgcgtaggagagcagattttaaCAACAAAGTACTTACCTA
TTCGTGGTATAAAAACATAATTACTGTGTCGTTTAAATCATCTCTTCTAA
GCAAATGTTCCTTCACCCCTATATGCTACTGTCGTAGTTGGCAGTGAACG
TGTTAACATCTACCCCCTGTCACATCTACCTTGTGGGTGGTCTTGGgcta
tttcaaacaaaaaagacCAGAATTCCGGCTACCGGTGAAATATCTGCTTC
TGTTAAGGATAGAAAAAAAACTATCCCCCATCTTCATTGCCCATTGGGAG
TGAGACACTAGAAATAAAGACCTgtccttttttcaacttttaagtTCTAT
ATTTAAGTTTTAGACcatagaaaatacaaaattacgCTATTACTGGCCTT
TattctaattaattttttaatatcAACCCAAACTATTTTTAACAGACGAT
ATTTGGTGCAGACTTGGAGGTTATCGAAGGCGCTGGTCACATGGTCATAT
TGGAAAAGCCTACACAGTATGTCATTTTTCTTATGTTCTTTATGTAATAG
GGGTTGATATATTTTATGATATTCGTTACATAATGTTTTTTACGGAAGCA
CTCACTAATAAAAACTGAACACGCTAATAGCTACTGTATCAAGCTAATTT
GAATTTCACACATTTCAGTGGACAAAAGCGCACGtgaattaaatttttca
tataTTTCTTCCGTTTAGCGTCAATGATGCTATTCACCGCTTTTTAAATC
GTGATTCATCCACATGGTCATCCCACCCTGCTCCTGAAGAAAGACCGCCC
GGACGTGGGGCGGCTTTTCAAAGTCCGCAATTGCTGGAGAATTCTGAAGC
ATCGGTTCGTTCTAATGGTGGACGACTTTCACGTTTATCGCGCACTTCAA
TACGCAGTAAGACTATGATGTAAGAAAAGGTGGAAGATTTTAACGTTGGA
GCGGGATATTGTAACCATTCTCAATAATTTAATGCTTTGGATAACCAGTA
CTGCAACTCTTTGCCAGCTGAAATTTTTTGACTATATTCTACGAATGCGC
AACAAAGAAAAGGGTGCGGAGAGTCTGACACTTTGAtcaaatgattattt
tttcttacggttgtattttattgttaatattcaattgaatatttttaact
GTATCATAAACTCATTTAACTCATATTTAAGAGAATGCCGAGTATaaact
tatctggcacccagatggtgaaattttcaccCGACacactaaagctctga
aggtcaggaaaattttcaacatctggaaggttaaGATTACGAAATTTGGC
AAGatcgcgtcaaggattttgccgccagaggtctggtaacccagccctcg
ttttaggGGATTGgtgggtccaaccgaaatatttttaggtttacgGGCAA
AGGCTGTTGAAAACGActgggatgcggcacatcaaaggccgactatcatt
cttctccgatgggaaattggcccgcttcctttagagctttagcgtggatg
gccgccaatccgccatcggaatatcagataaagtaTAAACCCATGGTATA
GACATCGGGTTAAGACCAAATTCTAAAGTCGCGGACATCGTCATTGGTCT
TTTAAAATGTGCATTACTATGTTTCTAATTAATCTGCGAAAAATTAAGAA
GtttgtttgaatttctttttttcaatatccaaaAATAAGTAGATTTTACT
TAAACTTGAAACGAATTTCTAGTAACGATTTTTTTGACTGACGATCGTAA
CAAAAAGTTgcgtgaaactttgagtatcaaACAATTCTAATCTCGACTTC
ATTTTATTGTGTAAAATGCTTCCTCCGGGTCAAGAACTctcttgctgaag
aagatataagcaacttaagtAGATTTTACCAATGAAGCCTGAATCCGCAA
AATCGGCGAAAATCTATCCAACTTTAGAAACAATATCAT Coding sequence (CDS) from alignment at scaffold_512:71051..75089+ >TCONS_00070019 ID=TCONS_00070019|Name=TCONS_00070019|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_512:71051..75089+ (Clytia hemisphaerica) ATGTTATTCTTTATTCACGAAGTTGGTGGAACTATACAAATGTGGGAACC TCAGATACATTATTTCCTTACTCTTGGTTATGAAATTATAGCATTAGATT TGTTGGGGCATGGTCAAAGTGGGAAACCACGTGTATATAATGCATATCAA TTCACAGAGCTGGCCTCTGatgtaatgtttatttttgatcGATTTAGTAA ACGTAGGAACGTTTTGATTGGACACTCTTATGGGAGTTCATTTTGCACAA TGTTATCGAAAGAACGAGCACGTAAAGTTTGTAAAACTGTTTTAATTTCT GGTGGAGGACCAACATTATTGATGCCAGATCGTTGTAGTGCTTTTTGTTT ACCATTACTGTACCTTTCTCTGTTTGTATACGAAAAAGTGTGGTCAAGAT GTTTCAAAGAATGGCATTTCATgaagaaacaagtgatactgtTCGTCAAA AGATTTCAACTTTTGAGATTTCATCTTTCGCCCTTAAAGCCATCATGCAA GGACAGAACTGGTACGAGTCAACAGAGGAATATCATGCTAGTTTGAATGT TATTCTTTATTCACGAAGTTGGTGGAACTATACAAATGTGGGAACCTCAG ATACATTATTTCCTTACTCTTGGTTATGAAATTATAGCATTAGATTTGTT GGGGCATGGTCAAAGTGGGAAACCACGTGTATATAATGCATATCAATTCA CAGAGCTGGCCTCTGatgtaatgtttatttttgatcGATTTAGTAAACGT AGGAACGTTTTGATTGGACACTCTTATGGGAGTTCATTTTGCACAATGTT ATCGAAAGAACGAGCACGTAAAGTTTGTAAAACTGTTTTAATTTCTGGTG GAGGACCAACATTATTGATGCCAGATCGTTGTAGTGCTTTTTGTTTACCA TTACTGTACCTTTCTCTGTTTGTATACGAAAAAGTGTGGTCAAGATGTTT CAAAGAATGGCATTTCATgaagaaacaagtgatactgtTCGTCAAAAGAT TTCAACTTTTGAGATTTCATCTTTCGCCCTTAAAGCCATCATGCAAGGAC AGAACTGGTACGAGTCAACAGAGGAATATCATGCTAGTTTGAATGTTATT CTTTATTCACGAAGTTGGTGGAACTATACAAATGTGGGAACCTCAGATAC ATTATTTCCTTACTCTTGGTTATGAAATTATAGCATTAGATTTGTTGGGG CATGGTCAAAGTGGGAAACCACGTGTATATAATGCATATCAATTCACAGA GCTGGCCTCTGatgtaatgtttatttttgatcGATTTAGTAAACGTAGGA ACGTTTTGATTGGACACTCTTATGGGAGTTCATTTTGCACAATGTTATCG AAAGAACGAGCACGTAAAGTTTGTAAAACTGTTTTAATTTCTGGTGGAGG ACCAACATTATTGATGCCAGATCGTTGTAGTGCTTTTTGTTTACCATTAC TGTACCTTTCTCTGTTTGTATACGAAAAAGTGTGGTCAAGATGTTTCAAA GAATGGCATTTCATgaagaaacaagtgatactgtTCGTCAAAAGATTTCA ACTTTTGAGATTTCATCTTTCGCCCTTAAAGCCATCATGCAAGGACAGAA CTGGTACGAGTCAACAGAGGAATATCATGCTAGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00070019-exon-scaffold_512-1491911889:71051..71807 | TCONS_00070019-exon-scaffold_512-1491911889:71051..71807 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1510915933:71051..71807 | TCONS_00070019-exon-scaffold_512-1510915933:71051..71807 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1575043694:71051..71807 | TCONS_00070019-exon-scaffold_512-1575043694:71051..71807 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1491911889:72109..72205 | TCONS_00070019-exon-scaffold_512-1491911889:72109..72205 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1510915933:72109..72205 | TCONS_00070019-exon-scaffold_512-1510915933:72109..72205 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1575043694:72109..72205 | TCONS_00070019-exon-scaffold_512-1575043694:72109..72205 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1491911889:72715..72828 | TCONS_00070019-exon-scaffold_512-1491911889:72715..72828 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1510915933:72715..72828 | TCONS_00070019-exon-scaffold_512-1510915933:72715..72828 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1575043694:72715..72828 | TCONS_00070019-exon-scaffold_512-1575043694:72715..72828 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1491911889:73596..73666 | TCONS_00070019-exon-scaffold_512-1491911889:73596..73666 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1510915933:73596..73666 | TCONS_00070019-exon-scaffold_512-1510915933:73596..73666 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1575043694:73596..73666 | TCONS_00070019-exon-scaffold_512-1575043694:73596..73666 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1491911889:73869..75089 | TCONS_00070019-exon-scaffold_512-1491911889:73869..75089 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1510915933:73869..75089 | TCONS_00070019-exon-scaffold_512-1510915933:73869..75089 | Clytia hemisphaerica | exon |
TCONS_00070019-exon-scaffold_512-1575043694:73869..75089 | TCONS_00070019-exon-scaffold_512-1575043694:73869..75089 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_512 | supercontig | scaffold_512:71051..75089 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070019 vs. Swiss-Prot (Human)
Match: ABHD8 (Protein ABHD8 OS=Homo sapiens GN=ABHD8 PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.541e-37 Identity = 77/172 (44.77%), Postives = 103/172 (59.88%), Query Frame = 1
Query: 259 NRTIHVVHYAQREQDLYTQSTEDESYESKVMLFFIHEVGGTIQMWEPQIHYFLTLGYEIIALDLLGHGQSGKPRVYNAYQFTELASDVMFIFDRFSKRRNVLIGHSYGSSFCTMLSKERARKVCKTVLISGGGPTLLMPDRCSAFCLPLLYLSLFVYEKVWSRCFKEWHFMK 774
RTIH+ D + T + ++ V+LFFIH VGG++ +W+ Q+ +F+ LGYE++A DL GHG S P+V AY F LA D+ IF R++K+RNVLIGHSYG SFCT L+ E V K ++I+GGGPT L P CS F +P L S C W F+K
Sbjct: 155 KRTIHI--------DCEKRITSCKGAQADVVLFFIHGVGGSLAIWKEQLDFFVRLGYEVVAPDLAGHGASSAPQVAAAYTFYALAEDMRAIFKRYAKKRNVLIGHSYGVSFCTFLAHEYPDLVHKVIMINGGGPTALEPSFCSIFNMPTCVLHCL------SPCLA-WSFLK 311 HSP 2 Score: 93.2041 bits (230), Expect = 5.758e-20 Identity = 51/143 (35.66%), Postives = 78/143 (54.55%), Query Frame = 3
Query: 687 CFLFTITVPFSVCIRKSVVKMFQRMAFHEETSD--TVRQKISTFEISSFALKAIMQGQNWYESTEEYHASLILPVLLVYGKGDQFVTLGEEQWMQETIFGADLEVIEGAGHMVILEKPTHVNDAIHRFLNRDSSTWSSHPAPE 1109
C +F + C+ + F + F + + + ++ + F +SSF L+A+M GQ W E E YHA L +PVLLV+G D+FV + E+Q M E + A L++I+ HMV+LE P VN +H FL W P+P+
Sbjct: 288 CSIFNMPTCVLHCLSPCLAWSFLKAGFARQGAKEKQLLKEGNAFNVSSFVLRAMMSGQYWPEGDEVYHAELTVPVLLVHGMHDKFVPVEEDQRMAEILLLAFLKLIDEGSHMVMLECPETVNTLLHEFL-----LWEPEPSPK 425
The following BLAST results are available for this feature:
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