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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070033 ID=TCONS_00070033|Name=TCONS_00070033|organism=Clytia hemisphaerica|type=transcript|length=4818bpRun BLAST on NCBI protein sequence of TCONS_00070033-protein >TCONS_00070033-protein ID=TCONS_00070033-protein|Name=TCONS_00070033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=851bp RFENDHDVGRGDRDYDRDYDRDRDFGRRGGGGGGGGGGVVGRYNPIQNEQRun BLAST on NCBI transcript from alignment at scaffold_512:129846..152448- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070033 ID=TCONS_00070033|Name=TCONS_00070033|organism=Clytia hemisphaerica|type=transcript|length=22603bp|location=Sequence derived from alignment at scaffold_512:129846..152448- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_512:129846..152448- >TCONS_00070033 ID=TCONS_00070033|Name=TCONS_00070033|organism=Clytia hemisphaerica|type=CDS|length=35784bp|location=Sequence derived from alignment at scaffold_512:129846..152448- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070033 vs. Swiss-Prot (Human)
Match: VIR (Protein virilizer homolog OS=Homo sapiens GN=KIAA1429 PE=1 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 1.943e-41 Identity = 192/718 (26.74%), Postives = 331/718 (46.10%), Query Frame = 1
Query: 2644 PNAKLEGSQKDLQQKFIVMQMMSANAMDVFVTLFHKCCEQLAAPWK--QNEPFSNPQCTIFVNIMHPXXXXXXXXXXXXXXXXXXXKDARLVQELFTLHKILCTKPPFGFLSAILTDIQEKIISLLVVFMQGTKEAPQ-SEEAVKTSTWYILFKELLVFAAAKPENFTTGXXXXXXXXXXXXXVHTLQDLSEDEVSKVMSHRLFSMANFSCLGVEIKALLKNTIGSCCSALQYYLRRVLCQLVDLGASVSSLIVRCLCEMVDEAMAQILTTSDPPTEENAATTSEVEKEKDATPSSTEDKKRSLSPFIYNTFSMLSYIVCQPGGKAAFLNAVTSSPGIMVAE--FPAFIPNAIALQAKEPDWFYLENC---LLPILHSICDHQVCL----TQTNDVITSQHLANHLPQGDFMEAIVEFCFQLTANHALPVPLLMRCLDMLESLTEHDYGMQYIRKSLDVKGDVLNSVLLRLYNGLSNEENLGPIYNSVSAFLDFLNLLTGSGLENFNLKSSNDADMPDEEKSKSVQSADQNVGEEKMETDKEPLRRSIFIRVNQLKDIFQLDGEAAKESSLTKMEKIIEERSHEDEELSSLAESILTLRMILIASPTKKDEREQDQKPEEDTTPMINLPAPTTVKEQFNSRLVSILVNMMEAERSANQNDWFDAPVPEEIDPESINEAIRVDLLAISEKNLPNFNFKEEIKKGFVNT-TEMKRSKRSK 4758
P +EG QKDL+ V+Q+ SA MD F+ + K L PW+ N + + T L L L + L +F FKD R+ L TLH +LC+ P G L + IQ II +L+ F QG E SEE + +TW ++ KE+L PE F +GLILLSELLP+PLP+ T Q + ++S ++ R + ++ ++++ G+ C +Q+ LRR+ QL DL + + LI+R + +++ E+ +TSE +KEK T +T ++ S+ C K A L+ + G + + + + +AL D + C + IL S+CD + L + + + L+N LP + M +I + AN L+ C+ + L EHDYG+ +++ SL L+S+L R+ + S + S+FL+F+ + S ++ + G ME + R++ I +LK + Q E + E+ ++EK++ E S +D+ L SL +S++ L+ +L +S +QD +P L AP +++ FN+R +L ++M+ + + WF EEID + + ++VDL+ +SEK +F+ E+++ F++ + R+K +K
Sbjct: 943 PPPPVEGQQKDLKWNLAVIQLFSAEGMDTFIRVLQKLNSILTQPWRLHVNMGTTLHRVTTISMARCTLTLLKTMLTELLRGGSFEFKDMRVPSALVTLHMLLCSIPLSGRLDSDEQKIQNDIIDILLTFTQGVNEKLTISEETLANNTWSLMLKEVLSSILKVPEGFFSGLILLSELLPLPLPMQTTQVIEPHDISVALNTRKLWSMHLHVQAKLLQEIVRSFSGTTCQPIQHMLRRICVQLCDLASPTALLIMRTVLDLI---------------VEDLQSTSE-DKEKQYTSQTTRLLA--------LLDALASHKAC----KLAILHLIN---GTIKGDERYAEIFQDLLALVRSPGDSVIRQQCVEYVTSILQSLCDQDIALILPSSSEGSISELEQLSNSLPNKELMTSICDCLLATLANSESSYNCLLTCVRTMMFLAEHDYGLFHLKSSLRKNSSALHSLLKRVVSTFSKDTG-----ELASSFLEFMRQIL---------------------NSDTIGCCGDDNG--LMEVEGAHTSRTMSINAAELKQLLQ-SKEESPENLFLELEKLVLEHSKDDDNLDSLLDSVVGLKQMLESSGDPLPLSDQDVEPV--------LSAPESLQNLFNNRTAYVLADVMDDQLKSM---WFTPFQAEEIDTDL--DLVKVDLIELSEKCCSDFDLHSELERSFLSEPSSPGRTKTTK 1587 HSP 2 Score: 149.828 bits (377), Expect = 5.576e-36 Identity = 157/597 (26.30%), Postives = 273/597 (45.73%), Query Frame = 3
Query: 582 DYEMLDDNWTSIS-MMFNPYQTQVKKLKNIEIVERSDFEILVEDYKKTLDLKEPPQV----KQLQDYVVLDSEAERDTKWVTMLDELPNIIPTAMAYLRSQPSMKMKEKHFASIITEWAIYALNMDKVCSLPLAANIRFXXXXXXXXXXXXXXCQEYQKLLITSNXXXXXXXXXXSQHMASSLKLLILRAMDACTNTSAGMESFLGWNRPKEESGEQTDSIYEELIQFVLEQSTVRITASIKALLQKAHFYESLSNLQSISSRISKSDTKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQQMKTCIALEINHKDMSDVLSAIDNIHKVFENGKEMIGQPGLRSFPTTVKVQSDL-KEDCYSTVVLLLKGRRFLESILILASSPLF-CEPPLYSAIRNLIFMLLSTYKGLLFLSSDPATVNGLVRVL--LSTEEEEYSLMPTLQHFLFSSELAEQCSPHQLGMLLVFHLQSLQLIDQLQTDLKPEMAVLEMDTPEHIEVLHMMYAICFTHIGRESLSHVLSLDNNLSCLIPFLT--CKEEL-DGKVKKSVCCRYSGVLLNTMFYHSYNVGYVQRFGPQLLTIPK 2336
D E ++ S+ M ++PY ++ L ++ FEI + K KE +L + + L E +R KWVT L+E+P++I ++YL+ +K ++ + +W + ALN+ P+A N+R LKAG KL + LA + L+ + V L LL + H++SSLKL +A+D+ + + GME+FL R E+SG Y++L++ +L TVR+ + A+LQK HFYE LS ++ + +++ + E T + M + I+ ++ +++ ++ + + E + Q ++SFPT ++ ++D Y + L FLE + +L S P+ P + A ++++ L + KGLLF S+ N L+R L ++EE L ++ + L Q+LQ I +L + + A E D + + LH +Y I F +GR ++ HV SL+ NL LI + KE L D K KKSV Y+ +L+ + S +V +++ LL + K
Sbjct: 322 DVEYTAEDLASVPPMTYDPYDRELVPLLYFSCPYKTTFEIEISRMKDQGPDKENSGAIEASVKLTELLDLYRE-DRGAKWVTALEEIPSLIIKGLSYLQ----LKNTKQDSLGQLVDWTMQALNLQVALRQPIALNVRQLKAGTKLVSSLAECGAQGVTGLLQAGVISGLFELLFADHVSSSLKLNAFKALDSVISMTEGMEAFL-RGRQNEKSG------YQKLLELILLDQTVRVVTAGSAILQKCHFYEVLSEIKRLGDHLAEKTSS--------------LPNHSEPDHDTDAGLERTNPEYENEVEASMDMDLLESSNISEGEIERLINLLEEVFHLMETAPHTMIQQPVKSFPTMARITGPPERDDPYPVLFRYLHSHHFLELVTLLLSIPVTSAHPGVLQATKDVLKFLAQSQKGLLFFMSEYEATNLLIRALCHFYDQDEEEGLQ------------SDGVIDDAFALWLQDSTQTLQCITELFSHFQRCTASEETDHSDLLGTLHNLYLITFNPVGRSAVGHVFSLEKNLQSLITLMEYYSKEALGDSKSKKSVAYNYACILILVVVQSSSDVQMLEQHAASLLKLCK 880 The following BLAST results are available for this feature:
BLAST of TCONS_00070033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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