TCONS_00070055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070055
Unique NameTCONS_00070055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070055 ID=TCONS_00070055|Name=TCONS_00070055|organism=Clytia hemisphaerica|type=transcript|length=452bp
aaattattttcagatcatagaaaatatgttttgatCGCTTTATCATATTT
TCCACGAtagtttttatgatttttcggGAGAGATTGGAATCTTGTTATAT
TCCCTGTTGTTTGAAGGTTTAGAATCGAAAAAACAGATCATCATTGGAAA
AGACAAATATGACACTTTTGGAAACTGACAAGTAGATAGTGTCAAAGTGG
TTAAAGTTTTCTCTACACTATATAAACTAAATTCTTACAGTCCACAAACT
GAATTTTATTAATCCGTTACAGCAACACTACGTGTCTACAAAATGGGAAA
GACGTCTTCGACTTTACGTGAAGAGAAGAGAGGAAGCTTTCTTTCACCAC
GTTTGACGCggcgaaaaagaaaagaagaccCTTCTGAAGGATGCGAAACA
TCAGATAATACTATGCTAcctaaaagtaaaaagaaatattcTAAAAGCGG
AG
Run BLAST on NCBI

transcript from alignment at scaffold_512:76604..77055

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070055 ID=TCONS_00070055|Name=TCONS_00070055|organism=Clytia hemisphaerica|type=transcript|length=452bp|location=Sequence derived from alignment at scaffold_512:76604..77055 (Clytia hemisphaerica)
CTCCGCTTTTAgaatatttctttttacttttaggTAGCATAGTATTATCT
GATGTTTCGCATCCTTCAGAAGggtcttcttttctttttcgccGCGTCAA
ACGTGGTGAAAGAAAGCTTCCTCTCTTCTCTTCACGTAAAGTCGAAGACG
TCTTTCCCATTTTGTAGACACGTAGTGTTGCTGTAACGGATTAATAAAAT
TCAGTTTGTGGACTGTAAGAATTTAGTTTATATAGTGTAGAGAAAACTTT
AACCACTTTGACACTATCTACTTGTCAGTTTCCAAAAGTGTCATATTTGT
CTTTTCCAATGATGATCTGTTTTTTCGATTCTAAACCTTCAAACAACAGG
GAATATAACAAGATTCCAATCTCTCccgaaaaatcataaaaactaTCGTG
GAAAATATGATAAAGCGatcaaaacatattttctatgatctgaaaataat
tt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043616XLOC_043616Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070055-exon-scaffold_512-1491911889:76604..77055TCONS_00070055-exon-scaffold_512-1491911889:76604..77055Clytia hemisphaericaexon
TCONS_00070055-exon-scaffold_512-1510915933:76604..77055TCONS_00070055-exon-scaffold_512-1510915933:76604..77055Clytia hemisphaericaexon
TCONS_00070055-exon-scaffold_512-1575043694:76604..77055TCONS_00070055-exon-scaffold_512-1575043694:76604..77055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_512supercontigscaffold_512:76604..77055 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.155583	0.375409	0.175727	0	0	0	0	0	0	0	0	3.01769	3.61453	0	0	4.84535	3.44428	2.41383	3.3159	2.28052	3.56897	0.631154	0.439398	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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