TCONS_00070062 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070062
Unique NameTCONS_00070062
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length771

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070062 ID=TCONS_00070062|Name=TCONS_00070062|organism=Clytia hemisphaerica|type=transcript|length=771bp
NCATGCTACTAATATTTTGAAAGTCTGGGAAGGTATCAGAGAGATCATTG
GCTCAAATTCTAAATCATCTCCCTCGTCTATTCGTGTTAATGGTCATCTT
ACCTTAGATCCAAAAGTTGTTGCCAATGGCTTCAATGACTTTTTTACATC
CATTGCAGAGACTGTTCGCTCCAAAATTGGTCCAACCATCACTTTTCCCA
TTATCTTAAGAACCGCAtcagaaattctatttttcttgaCCGTGTCAACC
CAGCTGaagttttattaattattaaatcCCTTCCCCTAAATAAATCATCT
GGTCCCAATAACATCCCCCAAAAAATCCTTcgccttttaaaatttgacct
tTCTGGACCactatcttttctttttaaccttTCTTTTGAATGTGGTTCTT
TCCCCACAATGCTTAAACTTTGCAAAGTAATTcctgttttcaaaaacaaa
gactCCCCTCTTGAGATCTCTAATTACCGCCCAATTTCTTTACTTTCCAA
CAtcgaaaaaattcttgaaaaacttaTGTACTCTCGTATCATTACTTTTC
TAGATTCTCATCGCgtattttttgaatgtcaatTTGGTTTTCGTAGATCT
CACTCAACAATCCACACTTTGCTTAACATTGTTTAACGTATTCGTAAATC
TCTTGATAGTGGTGTANTATTTTCCTTCCTACTCGTATTACTGACCACTC
TATGACACTTATTGATAATATCTTTTcctcaatttctgaaaaacacAGTT
TTTCAGGTATTCTGCTTTATT
Run BLAST on NCBI

transcript from alignment at scaffold_512:214853..215623

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070062 ID=TCONS_00070062|Name=TCONS_00070062|organism=Clytia hemisphaerica|type=transcript|length=771bp|location=Sequence derived from alignment at scaffold_512:214853..215623 (Clytia hemisphaerica)
AATAAAGCAGAATACCTGAAAAACTgtgtttttcagaaattgaggAAAAG
ATATTATCAATAAGTGTCATAGAGTGGTCAGTAATACGAGTAGGAAGGAA
AATANTACACCACTATCAAGAGATTTACGAATACGTTAAACAATGTTAAG
CAAAGTGTGGATTGTTGAGTGAGATCTACGAAAACCAAattgacattcaa
aaaatacGCGATGAGAATCTAGAAAAGTAATGATACGAGAGTACAtaagt
ttttcaagaattttttcgaTGTTGGAAAGTAAAGAAATTGGGCGGTAATT
AGAGATCTCAAGAGGGGagtctttgtttttgaaaacaggAATTACTTTGC
AAAGTTTAAGCATTGTGGGGAAAGAACCACATTCAAAAGAaaggttaaaa
agaaaagatagtGGTCCAGAaaggtcaaattttaaaaggcgAAGGATTTT
TTGGGGGATGTTATTGGGACCAGATGATTTATTTAGGGGAAGGgatttaa
taattaataaaacttCAGCTGGGTTGACACGGtcaagaaaaatagaattt
ctgaTGCGGTTCTTAAGATAATGGGAAAAGTGATGGTTGGACCAATTTTG
GAGCGAACAGTCTCTGCAATGGATGTAAAAAAGTCATTGAAGCCATTGGC
AACAACTTTTGGATCTAAGGTAAGATGACCATTAACACGAATAGACGAGG
GAGATGATTTAGAATTTGAGCCAATGATCTCTCTGATACCTTCCCAGACT
TTCAAAATATTAGTAGCATGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043623XLOC_043623Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070062-exon-scaffold_512-1491911889:214853..215623TCONS_00070062-exon-scaffold_512-1491911889:214853..215623Clytia hemisphaericaexon
TCONS_00070062-exon-scaffold_512-1510915933:214853..215623TCONS_00070062-exon-scaffold_512-1510915933:214853..215623Clytia hemisphaericaexon
TCONS_00070062-exon-scaffold_512-1575043694:214853..215623TCONS_00070062-exon-scaffold_512-1575043694:214853..215623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_512supercontigscaffold_512:214853..215623 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21429	0.721497	2.09437	2.25097	2.66657	2.39544	2.19673	2.51345	1.01244	1.23017	1.26891	0.922242	0.911557	0.43226	1.12318	0.571916	0.819114	0.739941	0.65795	1.08266	1.57449	1.54224	0.174251	0.950763	1.03265	1.04744	2.41967	3.32663	1.02287	1.08974
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top