TCONS_00070110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070110
Unique NameTCONS_00070110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length952

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070110 ID=TCONS_00070110|Name=TCONS_00070110|organism=Clytia hemisphaerica|type=transcript|length=952bp
GCGCGAGTAGGAAAGTTCAAAGTGCAATTTAATTCTGCTTCCTGCTCTGC
CATCTACCTGTGTTATTTGCCTTTCCTTGAAATGGCAGCGACAGCTTTAA
AGTCTCAAATACGAAAACAAAACAGTTTACAACGGGCTTCATCAAGTAAA
AGTGCTCCCAAAGGAGGTGATATTGAACGGATTGCGAGGTCTGGTACTGA
TGTCACATATACTGTCGATCTCTCATCAATCAATATAAAAGATGTTCCCG
ACCTTGGGAAATATAAACACTGTAAATCTCTTGATTTGTCTTGTAATCAA
ATCAAGTCTATTTATAAAGATACATTTCAATGTTGTTCTTACTtgaaaga
aatcaaactttattCTAACCATTTGTCTAAAGTGGAGGGTTTTAGAGAAT
TGCAACATTTGGAGAATTTACAGTTACAATacaacaatatttcaaaaata
aacaattcatTATCTGGATGTAGAAGTTTAAAATTCTTACGATTGGACTC
TAACAAAATCTCGGTTTTAAAGGGATTTTCAGCATTTGAAAGAGGTTGAA
TTTTTGGACAACCCTGTTTTGGAGGAACCAGAAACCGACGAACAATTGAA
AGCTGCCTTTGAAAGCCTTGATTTGGTTTATCTTAATGGGAGATCATTAA
AGAAGCAACAAGTAAAACGCCCAACAAGTGCGATGCGTCCGATGTCAGCT
AACCAACTTGTATCTGAGAGAGTTATTTCAAATCAACTACAATATGATGA
GATGTGCCTATCTGATTTTGAAGACCGGATTAATACGCAGTTCATAGCAC
TACAAGGATTACTCAGTGAGCTTCCAAAGCAATCACAGTCACCAGGTACA
GTGGTCAGAGTTCTTTCCGTTGAAGACGGATTTCCACCTCAGCTTAAAAC
AAGCCCTGttccatctcaaaatttaagtatGATTCAAAACTAATTCCTTT
TT
Run BLAST on NCBI

transcript from alignment at scaffold_513:355777..362745-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070110 ID=TCONS_00070110|Name=TCONS_00070110|organism=Clytia hemisphaerica|type=transcript|length=6969bp|location=Sequence derived from alignment at scaffold_513:355777..362745- (Clytia hemisphaerica)
GCGCGAGTAGGAAAGTTCAAAGTGCAATTTAATTCTGCTTCCTGCTCTGC
CATCTACCTGTGTTATTTGCCTTTCCTTGAAATGGCAGCGACAGCTTTAA
AGTCTCAAATACGAAAACAAAACAGGTAATACTAAATTTAGTTTGTAGGT
ACTAAAAATATTTTTTTTAATCATTTCCCCCCAACCAACCAGTCGACCCC
TTTCTTTATGTCCTTGCTTGACCTTTCATGAACCCAGACGCCCGCGCTCG
ATAGGATCGATCATCAGAACGGCTCGATGATGGATCGATATGTGATTGAT
GGATTACTTAACGATCCGGATAGGAGATCGATGGAAGATTCAGCCATTAA
AAAGTCTTGAGTATCGATCCTTCGTTGATCCATTATCGAGCTAGTATTTC
AATCAATGGAGTATACCAATTCGTCATTGATCGTTAATCGATTCGTCATC
GATTGTTAATCGATTCGTCATCGATCGTTAATCGATTCATCATCAATCAT
TAATCGATTTGTTATCGATCGTAGATCGAGTATGAGTCGATAGGGTCGAT
AAGATCGATAAAAGATCAATGATGATAGATCGATAAATAATTGATAACTA
ATCATAAGCTTAAAAAAATCTTGAGTATCGATCCTCTATCGATCTCCTAT
CCGGATCGTTAAGTAATCCATCAATCACATATCGATCCGTCATCGAGCCG
TTCCGTTGATCGATCCTATCGAGCGCAGACGTCTGGATGAACCTTGTCTG
CGCAGCAGTACAACATCATGGCGTCCTTTTAGTCTATCTTTTTTATATCA
TAGCTTGGCTAAAAGAAAAAACTTTTACCTGATCAACACAACCAAACTTT
CTGTCAGTGCAGCTGGAACCTTGATATTCCAGGATTAGAAAAAGCTATAC
CTGTTATCTTTTTTCTTTAAAAAGAATCAACAAGCCATCTAACCCAGGGT
CCACTTAAAGCTTTTTGATAGACTGGATGGCCCGATTAAGTGGCCCAGTA
GTATATGGTAATATGCTTTTGCTTAGGCGGACTGTTTTACAGTCCACCAG
ATTTTTGTTGTTTTTGGAAGGTAAAAACAGTATGAAGCAATGTTTTTATT
TGAGAATAAGGGATTGCAAATCTGTTATTGATGTTTATTTCTCATTTTTG
ATTACATCTTTCAACTCCAAGTAGTTTTTTTGTTATTTGGATTTTAAACA
TTCTTTTTTTTCAAAATGGCGACCTCGCCAAACGCTCCTTATCTACTTCA
CTGGACTCAGCGTCAAAAATTATCAAAAAGCAAAGTTCAGCCAGATTTAG
ACTCTAGTCTACAAGCCATCAACATCGATTAAATGACACACATTTCCTCA
GAAACTTCCAAAATTATCTGCCATTATGACTTTCTTGAAGCCATTCCGAA
ATTAAAGGGGAACTCAACAAATTTTGGATTTTTTTGTTTCTATCCTGAAA
TGGTTTGTTTCAACAAAAAATTTCAAAATTTCAAGGTTGCAACTCTCCTT
TCACTCAAAAAATTTGTTTAATGAGCTTTTAAAAAGAGGCTCCCCTCTAC
TAAAATGAAATTGTTTATCAAATAAAAAAGACGCACTTTCAGCTGCTTTA
TGACGTAGCCGTATTCAGAAAGAGGAAGATGCTTATCTTCTCAGGCTAAA
AATCAGTGAAGACATGCCCTTAAGTAGAGGGTTTGTGACTAAATTTTTGT
GTTTCTAGTTGGATTTTTTATTGTTATTCAGCTAAATCACCCACAATTTA
CCAGGAATACTTTGCTATGTATTTATTTCTTATTTAAAACAGAACTGTAG
TCATAACTGAATTTGTTCTGTTTTCTGAATGCAGTGACGTCATAATCCAA
AGAGAAGTCGATCTTTTTTTTAAAGAAAGGGGGTGATTTTTTTAACATAT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGATCGGACTTATAT
ACTTTCTTTCTCATTTTTATACTTAATATTACCAAAAATCAGTAAAAAAA
TAAAAATGTCAAATTTGTTGAGTTCCCCTTTAACCAATCATGTTGTGTAT
CGGAATTCCTATGGGAGTTCTTTTCCGAGATTTGTAAAATAGCTAAGTCG
GCAAAATACTTTTTCCAGGGGTTTGAGGACAGAACAGAACTGCTATCATT
TGCTTTTTAAACCATGTATTTAAATTTGCGCTCAAAGATACTTCCAGACG
ATCTCAATCGAACGGAATCGACGATCGAACCAGTCCAACCAAATCGAACG
CAATCGACCGATTGAAATTCGATTGTCAAACGCAGTCGAATCTCAATCGA
ATACTACCGCAATTTACAGATTCGATTGATATTCGATTGCGTTGGATTGA
TGTTCGATTGTGTTCGATTGCGTTCAATCGTCGATACATTGACCCCCGGA
TTGTTCATTGCATAATTTCTACGGGAAATCAAAAGTAATTTCATTCAGCT
TGTGATGTTTGAGAGCTTGGATGTTGGGAAGCTGCAAGAATAAAGCCAGG
CGATCTCAATCGAACGGAATCGACGATCAAACCAGTCGAACAACAATCGA
ACCAGTCGAACAACAATTGAACCAATAGAATATTACCCAGAATTTTGACG
TTCGATTGAGATTCAATTGGTCAATTGCGTTCGATTTGGTTCGATTGGTT
TGATCGTCGATTCCGTTCGATTGAGATCGCCTGGTAAATAAATAAGTTAA
TAATACAGAATGACATTGTTTATCATTTGGAATCCCCCGTATTTGGACCA
TTCTATTGTGGGCACAAAATAGGGCAGAAACTAAGTAGCACCCTCAGTGC
AAGATTGCCACCTCATCTGTATTTGTCCGCGCGAGAACGCGAGCTAATCA
TTTTTTTTATGCGCTCAAGGGGAAAAAGAGAGTGATCGATATTCTTTGAA
GGAAAAACGCCAGAAACAAACCCAAAGACCAAAAGATGTATTTTGTTGTT
GAGAATGGATCCTGTGAAGATGAAAAAATTTCTGCTATCCGTTTTTTTCG
AAACGCTGAAAAACCCTAATTTTGATCTTCCGTAAGGTAAAGAGGTTGCG
AGATTTGGGTTAGCGAGGCAAAAATCGCTAAGAAGCTGGTAAAATCGTAA
TCCTCAAAAATAGTAGACCTTTTTTCAAAGAGGCCACCCTGTTGAATATA
TGTAGTCCAGCAGAAAAACAATGATAAAACCATGCATAATTATTACAATA
TGCATGATACAGTAATTATGCATGGCTCTATCATTTTTTTTATGGCTGGA
CTACAAAACTATTCAACAGGACGCCCTCTTTGAAAAAAGGTCTATTGAAG
TTCCAGCTTCACTGTCTGTCGTGTGTTTACATTTTCCTTCCCCAAAATTT
TTGTTTTGTTTAAACTAAGTTTTATAAACTCAATATAGGCGTAGTGGTAT
AGTGGTTATTATCTTTGTTGATTCCCGCCTAGAGACATTACTTTCCCTCA
GCCAATAAAAACATGATAAATTATCTTGTCTCTAGAGGTAACTTCCGTCA
ACTGCTCTAAACTAAACTAAACTTGGGACGATTGGTCAAAACTGTTGCTG
TATTTTCGCTTACTGTTAAATTATATTGATAACAAATTAGTTTTTATAAC
TCCACCAAGTTTATCTTAATCATACTTTCTGTCATACTATGTCACAATAA
CTTTTACTGATAGCACGCCCTTTTTAACTTTTTTGTTTTCATTCAAAATG
ACCGGACGCCAATTGGAGAATTAGAGAACACCCGTCGCCTACCGCCTATT
GCCCAATGGGATAAACAAATACCCAAGTTAGAGCAGTTGACAGTACTGTG
GAGTACCGTCAACTGCTCTAACTTAGGACAATTAGTCAAAATATTGGACT
GGTTGATATCTGGCCTGTATTTTCACTTACTTTTAAATCTCTTTGACAAA
AAATATTTGTTTTGATTACTCCACCAAGTTTATCAATCATACTTCTTTGT
TCCTCTTAGAGTGCACAGACACTCTTGTGTGTTCCACTATAGATTTTTTT
CATATTTCTATTTAAAAGCGTACTCTGTGCGAAAGAGAAATCTTGCATTT
TTTAATACGCTGTTCATTAAATCAAATCAAATGACTTTAGAGGTTCGGTG
AAATGGTGGCTGAATTGCAGTCCTATGTTTTGTCAGATAGTCCCAAGTTA
GAGCAGTTGACGGTAATTAGTTATTTAAAAGACTGACGCGTTCGCCAAAA
CATCTATTGACTTATTAACCTGATGTCCAAAATCATCCAGCAAGTATCTT
TTCGAAGTATCTTCCCTAGAAAATTTGATCTGTTTCCATAATTTTCAGAA
TTCAAATTTTGAATTGTTCTCCCAAGCTTATAAGAAAGTTTCCCTCTCCT
GGAAATTTCCATCTGTTTCCCTTGCTTTTGTGGTTGATATCTGTTTTCCC
CCAGAAAGTTCAATCTTTTTCCAATGCAAAATCATCTTTTTAGAAACAGA
TGTATATTTCCCAATTTATTTTGTCATCTCCTTGAAATATTGGTCTGTTT
CTCTCTATGGCGTCATCAGCTGGAGCGGGGAAACAGATAGTTTTAAGGAA
TTAAGGTCTTTCCTAGAAAATTGGATCTGTTGAACTTGAAATCCGTCGTA
CATCCCACCTTACCCACCGTACATCACCGTACAATGTACAGCGGTGTCCA
GGGTTGTTCAAAATATTCTACAACAAATAAGAATCTTGTTGTGCGCCGGA
AAGTCAAAAACTAAATTTTCCTGATATGGGCGCTATTCTATTCATAAACA
CACTTTCAAGCAACTTTGTTGGCATTTCTAGTCCTTTTAGATGAACATGG
TCCTTACATTTTGAGATAAATTATGTTTAACCCATCCCTTTTGAGCTTCA
GCATCTCAGCAAAAAACAATCACAATCTGATCTCAGAGGTTAATTGACTT
AGGATTTGCTGCAGCGTTATTACATGCAGATTCAGGAGTGTGTTAGCATG
ACAACTTTTTATTCAATAGACAGTCGCACAACTATTAGCTATGCAATAAA
GACTGTGGTGTTTGCCTAAAGGAGTATGCTGACTTATGCTGTGTTATTCT
GTCATAGCAACTTTCTAATCTTTTAAATGTTTATAAACAGTTAGTAGAAG
TGCTTCAATCTATACCAAGTAAAGTCGTTGAAAAATTCATTTGTAATGCT
CTAGTTTGTCATTTGGAATCTTTTCATCAGTTTTCAATGGGGTTTTCACA
AACAGAGCTCTTGTGAAGACCTTCTTCTTCATATGACAGAGAAATGGCTG
AAATCTATTGATTCAGGAAAAGTTGTTGTTGTTTTATTTATTGACTTTCA
AAAAGCATAGCTCATCCTATTTTGCTTAATAAACTTGCTGGGTGTGGAAT
ATCTGGATCATTTCTTTGAGTACATAAAATCCTATTTAGATGATCGCTCT
CAATATTTCATTTACTGGTCAAAAAGACATCGACAAATTGGGTATAGGTA
TTCAATCTTTCCCTGTTTTCATAAAAAAAATGATTTGGAATTTAATTGAA
ATTAATTGACAAATCTTTTACAATATTTTTTAATCTAAAGTAGTCAAAAA
AGTTATATTTTCTGTTATAGTTTACAACGGGCTTCATCAAGTAAAAGTGC
TCCCAAAGGAGGTGATATTGAACGGATTGCGAGGTCTGGTACTGATGTCA
CATATACTGTCGATCTCTCATCAATCAATATAAAAGATGTTCCCGACCTT
GGGAAATATAAACACTGTAAATCTCTTGATTTGTCTTGTAATCAAATCAA
GTCTATTTATAAAGATACATTTCAATGTTGTTCTTACTTGAAAGAAATCA
AACTTTATTCTAACCATTTGTCTAAAGTGGAGGGTTTTAGAGAATTGCAA
CATTTGGAGAATTTACAGTTACAATACAACAATATTTCAAAAATAAACAA
TTCATTATCTGGATGTAGAAGTTTAAAATTCTTACGATTGGACTCTAACA
AAATCTCGGTTTTAAAGGGTAAGGAATTTTGTTCATTGCATCAGTTAACG
TATTTGGATATCAGTGCAAACCAACTTGAAGATATCAGTTTTGTGACTGT
GCTACCATTACTCCAAGAGCTTCACTGCACACATAACAAGCTGACAGAAA
TACCTGATATAATGTCACTGAAAAAACTGCAAGAAATTGATCTCAGTCAT
AATACAATATCAAACGTTACTGGTCTCAAAGGATTAGCTAATTTAAATAT
ATTATGCGTCAAAAATAATTTCATATCATCAATGACATCTGTAAAAACAT
TAAAAACATTAACTGAGCTAAATGTTTCGAACAACAAAATCAAATGTTTG
TCACAATTCAAAACAGTGATCCCAAGCATTGAAATACTCAACATTTCTTG
CAATCATATTGAAAACATTGATGAAATTCTACAATTGAAGGATTTTCAGC
ATTTGAAAGAGGTTGAATTTTTGGACAACCCTGTTTTGGAGGAACCAGAA
ACCGACGAACAATTGAAAGCTGCCTTTGAAAGCCTTGATTTGGTTTATCT
TAATGGGAGATCATTAAAGAAGCAACAAGTAAAACGCCCAACAAGTGCGA
TGCGTCCGATGTCAGCTAACCAACTTGTATCTGAGAGAGTTATTTCAAAT
CAACTACAATATGATGAGATGTGCCTATCTGATTTTGAAGACCGGATTAA
TACGCAGTTCATAGCACTACAAGGATTACTCAGTGAGCTTCCAAAGCAAT
CACAGTCACCAGGTACAGTGGTCAGAGTTCTTTCCGTTGAAGACGGATTT
CCACCTCAGCTTAAAACAAGCCCTGTTCCATCTCAAAATTTAAGTATGAT
TCAAAACTAATTCCTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043650XLOC_043650Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070110-exon-scaffold_513-1575043694:362621..362745TCONS_00070110-exon-scaffold_513-1575043694:362621..362745Clytia hemisphaericaexon
TCONS_00070110-exon-scaffold_513-1575043694:356628..357025TCONS_00070110-exon-scaffold_513-1575043694:356628..357025Clytia hemisphaericaexon
TCONS_00070110-exon-scaffold_513-1575043694:355777..356205TCONS_00070110-exon-scaffold_513-1575043694:355777..356205Clytia hemisphaericaexon
TCONS_00070110-exon-scaffold_513-1510915933:362621..362745TCONS_00070110-exon-scaffold_513-1510915933:362621..362745Clytia hemisphaericaexon
TCONS_00070110-exon-scaffold_513-1510915933:356628..357025TCONS_00070110-exon-scaffold_513-1510915933:356628..357025Clytia hemisphaericaexon
TCONS_00070110-exon-scaffold_513-1510915933:355777..356205TCONS_00070110-exon-scaffold_513-1510915933:355777..356205Clytia hemisphaericaexon
TCONS_00070110-exon-scaffold_513-1491911889:362621..362745TCONS_00070110-exon-scaffold_513-1491911889:362621..362745Clytia hemisphaericaexon
TCONS_00070110-exon-scaffold_513-1491911889:356628..357025TCONS_00070110-exon-scaffold_513-1491911889:356628..357025Clytia hemisphaericaexon
TCONS_00070110-exon-scaffold_513-1491911889:355777..356205TCONS_00070110-exon-scaffold_513-1491911889:355777..356205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:355777..362745 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.174592	0	1.24905	0.913885	2.221	0.386359	0.926007	1.34145	0	1.45986	1.32742	1.0329	0.163721	0.396365	0	0.625356	2.0374	3.33812	0.638556	1.12804	0.280184	0.317073	1.28171	0.879685	4.15212	0	1.01569	0.250905
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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