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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070117 ID=TCONS_00070117|Name=TCONS_00070117|organism=Clytia hemisphaerica|type=transcript|length=2191bp
aaaagtagaactaaaaatggaaaatggaaaagaatGTGGAGATTGTTCCT
TCGATTTTTCATCTCAAGACCTTCAATCTTTGCCTGATGAGTTGCTCACA
AAGGAATTggaagaaaagataaaagaacTATGTTTGGACtacaatgattt
tgatgaactCCCAGAAGAGACAAACCGATTTATCAATTTGGTAAAATTCA
GTATTAGTGAACCTTGAACACCTGGAGATATTTGAAGCTACGAATAATAA
ACTGGAAGTTCTGTCAGAAGACATTGGATGTGCCAAAAAGCTGAGAATCT
TGAATTTAAATCATAACCAACTTTTGACCCTCCCTGAAAGTATTTCTGAT
TTGGAAGCTGTAGAGATTCTCGATTTGTCTAATAACTTGTTAAAAGAATT
ACCAGAAAGATTTGCTTCGTCTAAACGGCTTGTCAAGTTCATGGCTGAAA
ATAacacttttaaatatttccctttctGGTTTTGTGATTTACCCAAAATT
GAAGAAATGTATCTGTCAGATAACTCAGTTACTCTTGAACCTTTTGATGA
CGAATTTTGCTCTAATGCTCCGAATCTGAGAATCTTAGAAGCTGGTGCTA
ATTATATGAGCTCTATATCAGAAAAATTTGGATTATTATCGAAATTGGAG
CAAGTACATTTCGGGAGCACTATACCGGAATTGGAGAGAAGCCATTTTCA
AAATGGGAATTGGATGGTAAAACTACCAGATTCTTTTTGTGAACTGAAAC
ATTTAAATAAAGCAAATATCAATGAAAATCAGCTGAATTGTTTACCAGAG
CGTTTTGGTGAATTAGAATCATTAACTTGGTTAGATCTTGGTCAAAATAT
GATACGCCATCTACCGAGTACATTTTGTGAATTGAGAaatctggagtttt
tacaactGTCGAAAAACCAATTGGAGGAATTGCCCGAGGAGATtggaaat
tttcagaaattaatCGAACTGAGGCTTGATAATAATGTGTTGAAAGCTGT
TCCTGATTCATTAGGTACCATCAAAGGTTTACAGGCTTTGGATTTGTTTA
GCAATGAACTTGAAGCATTACCAGAGGTGATTTTCCAACTGAAGAAATTG
ACCAGATTGGATTTGGATCGCAACAATTTCAACATGTCTTTAGCTGATGT
TCCAAAAATCACACCAGGTATTAACTATCCAGAACGTGATCCGAAACTAA
AGAACAACTGGCGTGGACGTACCAGACAAGTACAGATGGACAACACTGAA
GTCATCGAGTATAAAGATGAAGGGGAAGAAGACACTATTGTAGAAGAAGA
ATGGAATTACCAAGCATTGCGCACCGCCATGCATCGTGGGATGTCGTTCT
GGAGATCACATACTAATCCTAACGAAAGAAGAAGACCTACCGGATCAAAA
GCAAACAGCGTCACCATAACCGAAGAAAGCGAGCCTCGTTTCGATGACGA
CAGTGAAAACTTGATAATCACCCCTAGCAACGAACAAATAATAATTACTA
AACAAAATGGTAGCTTTTCGACCGCGTTTGACCCCAACGAAGAAGACTGG
GACGAGGAAATTAAAATTAACACTGAATATAAATCGATCTTATTGACTTG
TGATGAACGTCAAATATCTAACAAGGAGACTCCACtgactgattttcaaa
aatttgtgaaCCAGTATCCACCAGCTAAACAATGCTTCAGTTCAACAGGT
TTTTACGAATCGTTTGTTCATGTGAAGAAGAATCGAGAGAACGTTAAAAC
GTCGTTTAATTCGGGTGATACGAATGTGTTTATTGTCGAAGGGCAATTTG
ATGATGCTGACTAGCTCTTAATCATAAGAGTTAAtaaaatttgcgatttt
ttgagttttaatctTTCTTAAGTGGCAATTTTTCGTTCTTTAGGATTAAA
TCAGTCTATAGTTTCCCCTTTACTCtccaaagggcttatgatgcgtactc
ctcggcgggtgcgacgccgggtgacggttAGTTTTTTTACTATTTCGCCT
GTGCAACGCGCTCTGTAAGAATGAAGAAGCCTCTTCTTGTAATAAAAACA
TGGTCTGAGTTCTAAATCAAAATACATAATGCCTTTGTCTTCTAGTGGTT
TATTTCACTGCAATATTTTggcttttgttttgaatttgccCAATACTTat
atttttaactgttttaagtTAATGTCCTACGTATAAATCCC Run BLAST on NCBI protein sequence of TCONS_00070117-protein >TCONS_00070117-protein ID=TCONS_00070117-protein|Name=TCONS_00070117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MAENNTFKYFPFWFCDLPKIEEMYLSDNSVTLEPFDDEFCSNAPNLRILE
AGANYMSSISEKFGLLSKLEQVHFGSTIPELERSHFQNGNWMVKLPDSFC
ELKHLNKANINENQLNCLPERFGELESLTWLDLGQNMIRHLPSTFCELRN
LEFLQLSKNQLEELPEEIGNFQKLIELRLDNNVLKAVPDSLGTIKGLQAL
DLFSNELEALPEVIFQLKKLTRLDLDRNNFNMSLADVPKITPGINYPERD
PKLKNNWRGRTRQVQMDNTEVIEYKDEGEEDTIVEEEWNYQALRTAMHRG
MSFWRSHTNPNERRRPTGSKANSVTITEESEPRFDDDSENLIITPSNEQI
IITKQNGSFSTAFDPNEEDWDEEIKINTEYKSILLTCDERQISNKETPLT
DFQKFVNQYPPAKQCFSSTGFYESFVHVKKNRENVKTSFNSGDTNVFIVE
GQFDDAD Run BLAST on NCBI transcript from alignment at scaffold_513:411595..414735- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070117 ID=TCONS_00070117|Name=TCONS_00070117|organism=Clytia hemisphaerica|type=transcript|length=3141bp|location=Sequence derived from alignment at scaffold_513:411595..414735- (Clytia hemisphaerica)
AAAAGTAGAACTAAAAATGGAAAATGGAAAAGAATGTGGAGATTGTTCCT
TCGATTTTTCATCTCAAGACCTTCAATCTTTGCCTGATGAGTTGCTCACA
AAGGAATTGGAAGAAAAGATAAAAGAACTATGTTTGGACTACAATGATTT
TGATGAACTCCCAGAAGAGACAAACCGATTTATCAATTTGGTAAAATTCA
GTATTAGTGGTAATAATTTATCAACTCTGCCAGACATACAGCAACTTGTG
TGTTTGAAAGAACTCAATTTAGATGAAAACTCGTTGATCTCTTTGCCAGA
CACATTAGGTGAACTTCAAGCACTGGAGAAACTATCAATGATTGGTAATA
GATTGAAAACATTACCAGAAAGTTTGGGAAAATTGAAGTCCTTAAGAGAA
CTATATATTGATGAAAATGATTTGGCTGTGATCAATTTTAGTTTTCAGAA
CCTTGAACACCTGGAGATATTTGAAGCTACGAATAATAAACTGGAAGTTC
TGTCAGAAGACATTGGATGTGCCAAAAAGCTGAGAATCTTGAATTTAAAT
CATAACCAACTTTTGACCCTCCCTGAAAGTATTTCTGATTTGGAAGCTGT
AGAGATTCTCGATTTGTCTAATAACTTGTTAAAAGAATTACCAGAAAGAT
TTGCTTCGTCTAAACGGCTTGTCAAGTTCATGGCTGAAAATAACACTTTT
AAATATTTCCCTTTCTGGTTTTGTGATTTACCCAAAATTGAAGAAATGTA
TCTGTCAGATAACTCAGTTACTCTTGAACCTTTTGATGACGAATTTTGCT
CTAATGCTCCGAATCTGAGAATCTTAGAAGCTGGTGCTAATTATATGAGC
TCTATATCAGAAAAATTTGGATTATTATCGAAATTGGAGCAAGTACATTT
CGGGAGCACTATACCGGAATTGGAGAGAAGCCATTTTCAAAATGGGAATT
GGATGGTAAAACTACCAGATTCTTTTTGTGAACTGAAACATTTAAATAAA
GCAAATATCAATGAAAATCAGCTGAATTGTTTACCAGAGCGTTTTGGTGA
ATTAGAATCATTAACTTGGTTAGATCTTGGTCAAAATATGATACGCCATC
TACCGAGTACATTTTGTGAATTGAGAAATCTGGAGTTTTTACAACTGTCG
AAAAACCAATTGGAGGAATTGCCCGAGGAGATTGGAAATTTTCAGAAATT
AATCGAACTGAGGCTTGATAATAATGTGTTGAAAGCTGTTCCTGATTCAT
TAGGTACCATCAAAGGTTTACAGGCTTTGGATTTGTTTAGCAATGAACTT
GAAGCATTACCAGAGGTGATTTTCCAACTGAAGAAATTGACCAGATTGGA
TTTGGATCGCAACAATTTCAACATGTCTTTAGCTGATGTTCCAAAAATCA
CACCAGGTAATCTATCGACGGTTCTCTTTTGGTTCAGGCTTCTTAGGGAA
ATAATTTTCGCGGAACTAATTCTGTCGGGAACTTACCCTTTGCGTAGAAA
GATGAAATAGTTTGGGCAAGAAGTTGGCGTTCACCGCGAAGTTCTAAAAA
AAATAAAATATGAACCAATACAATATGAGCTTGGTTATTGGACTTTTGTC
CCCACCGATCTCTTTCCACGGAGCTTTCTTTTTACTTGTAATAAAGTTCT
GTTTTGAAAGATGAAAAAATGCCACTTTCTCTGTTATTGCTTATAGCTAT
GCTATAATTCTGGATGTTTTAGGTATTAACTATCCAGAACGTGATCCGAA
ACTAAAGAACAACTGGCGTGGACGTACCAGACAAGTACAGATGGACAACA
CTGAAGTCATCGAGTATAAAGATGAAGGGGAAGAAGACACTATTGTAGAA
GAAGAATGGAATTACCAAGCATTGCGCACCGCCATGCATCGTGGGATGTC
GTTCTGGAGATCACATACTAATCGTAAGGAGACAATATATTTTTTCTTGA
TTCGTCTTTCTTATAACTGGAGCATTACTGATTCAGTGTATAGACCCTTT
GTCGAGTGTTTTGTAGAAGTACTCCTTGAGTGTTTATTTGATAGCATATT
CTCTCCGGCCCTGTTTACTCAGCACCATATCAGGTACAATATGGTGATAG
GGTGGGTTATGGTATTCATGATATGCACCACTGCAATGTCTTCTGACATT
ACGTCACGGAACCAATTGCTCATTGGTTGGAAGTGACGTAAAAGCAGTCA
ATACGTCATTTTCAACCAATCAGCTATTGGGTGGAACGGAAGACATTGCA
ATGGTGCATATCATGAATTATAAGTGTCTGCTATGACACTATGATTACCT
ACGTACATTATTTTCCAGCTAACGAAAGAAGAAGACCTACCGGATCAAAA
GCAAACAGCGTCACCATAACCGAAGAAAGCGAGCCTCGTTTCGATGACGA
CAGTGAAAACTTGATAATCACCCCTAGCAACGAACAAATAATAATTACTA
AACAAAATGGTAGCTTTTCGACCGCGTTTGACCCCAACGAAGAAGACTGG
GACGAGGAAATTAAAATTAACACTGAATATAAATCGATCTTATTGACTTG
TGATGAACGTCAAATATCTAACAAGGAGACTCCACTGACTGATTTTCAAA
AATTTGTGAACCAGTATCCACCAGCTAAACAATGCTTCAGTTCAACAGGT
TTTTACGAATCGTTTGTTCATGTGAAGAAGAATCGAGAGAACGTTAAAAC
GTCGTTTAATTCGGGTGATACGAATGTGTTTATTGTCGAAGGGCAATTTG
ATGATGCTGACTAGCTCTTAATCATAAGAGTTAATAAAATTTGCGATTTT
TTGAGTTTTAATCTTTCTTAAGTGGCAATTTTTCGTTCTTTAGGATTAAA
TCAGTCTATAGTTTCCCCTTTACTCTCCAAAGGGCTTATGATGCGTACTC
CTCGGCGGGTGCGACGCCGGGTGACGGTTAGTTTTTTTACTATTTCGCCT
GTGCAACGCGCTCTGTAAGAATGAAGAAGCCTCTTCTTGTAATAAAAACA
TGGTCTGAGTTCTAAATCAAAATACATAATGCCTTTGTCTTCTAGTGGTT
TATTTCACTGCAATATTTTGGCTTTTGTTTTGAATTTGCCCAATACTTAT
ATTTTTAACTGTTTTAAGTTAATGTCCTACGTATAAATCCC Coding sequence (CDS) from alignment at scaffold_513:411595..414735- >TCONS_00070117 ID=TCONS_00070117|Name=TCONS_00070117|organism=Clytia hemisphaerica|type=CDS|length=4122bp|location=Sequence derived from alignment at scaffold_513:411595..414735- (Clytia hemisphaerica)
CTAACGAAAGAAGAAGACCTACCGGATCAAAAGCAAACAGCGTCACCATA
ACCGAAGAAAGCGAGCCTCGTTTCGATGACGACAGTGAAAACTTGATAAT
CACCCCTAGCAACGAACAAATAATAATTACTAAACAAAATGGTAGCTTTT
CGACCGCGTTTGACCCCAACGAAGAAGACTGGGACGAGGAAATTAAAATT
AACACTGAATATAAATCGATCTTATTGACTTGTGATGAACGTCAAATATC
TAACAAGGAGACTCCACTGACTGATTTTCAAAAATTTGTGAACCAGTATC
CACCAGCTAAACAATGCTTCAGTTCAACAGGTTTTTACGAATCGTTTGTT
CATGTGAAGAAGAATCGAGAGAACGTTAAAACGTCGTTTAATTCGGGTGA
TACGAATGTGTTTATTGTCGAAGGGCAATTTGATGATGCTGACTAGGTAT
TAACTATCCAGAACGTGATCCGAAACTAAAGAACAACTGGCGTGGACGTA
CCAGACAAGTACAGATGGACAACACTGAAGTCATCGAGTATAAAGATGAA
GGGGAAGAAGACACTATTGTAGAAGAAGAATGGAATTACCAAGCATTGCG
CACCGCCATGCATCGTGGGATGTCGTTCTGGAGATCACATACTAATCATG
GCTGAAAATAACACTTTTAAATATTTCCCTTTCTGGTTTTGTGATTTACC
CAAAATTGAAGAAATGTATCTGTCAGATAACTCAGTTACTCTTGAACCTT
TTGATGACGAATTTTGCTCTAATGCTCCGAATCTGAGAATCTTAGAAGCT
GGTGCTAATTATATGAGCTCTATATCAGAAAAATTTGGATTATTATCGAA
ATTGGAGCAAGTACATTTCGGGAGCACTATACCGGAATTGGAGAGAAGCC
ATTTTCAAAATGGGAATTGGATGGTAAAACTACCAGATTCTTTTTGTGAA
CTGAAACATTTAAATAAAGCAAATATCAATGAAAATCAGCTGAATTGTTT
ACCAGAGCGTTTTGGTGAATTAGAATCATTAACTTGGTTAGATCTTGGTC
AAAATATGATACGCCATCTACCGAGTACATTTTGTGAATTGAGAAATCTG
GAGTTTTTACAACTGTCGAAAAACCAATTGGAGGAATTGCCCGAGGAGAT
TGGAAATTTTCAGAAATTAATCGAACTGAGGCTTGATAATAATGTGTTGA
AAGCTGTTCCTGATTCATTAGGTACCATCAAAGGTTTACAGGCTTTGGAT
TTGTTTAGCAATGAACTTGAAGCATTACCAGAGGTGATTTTCCAACTGAA
GAAATTGACCAGATTGGATTTGGATCGCAACAATTTCAACATGTCTTTAG
CTGATGTTCCAAAAATCACACCAGCTAACGAAAGAAGAAGACCTACCGGA
TCAAAAGCAAACAGCGTCACCATAACCGAAGAAAGCGAGCCTCGTTTCGA
TGACGACAGTGAAAACTTGATAATCACCCCTAGCAACGAACAAATAATAA
TTACTAAACAAAATGGTAGCTTTTCGACCGCGTTTGACCCCAACGAAGAA
GACTGGGACGAGGAAATTAAAATTAACACTGAATATAAATCGATCTTATT
GACTTGTGATGAACGTCAAATATCTAACAAGGAGACTCCACTGACTGATT
TTCAAAAATTTGTGAACCAGTATCCACCAGCTAAACAATGCTTCAGTTCA
ACAGGTTTTTACGAATCGTTTGTTCATGTGAAGAAGAATCGAGAGAACGT
TAAAACGTCGTTTAATTCGGGTGATACGAATGTGTTTATTGTCGAAGGGC
AATTTGATGATGCTGACTAGGTATTAACTATCCAGAACGTGATCCGAAAC
TAAAGAACAACTGGCGTGGACGTACCAGACAAGTACAGATGGACAACACT
GAAGTCATCGAGTATAAAGATGAAGGGGAAGAAGACACTATTGTAGAAGA
AGAATGGAATTACCAAGCATTGCGCACCGCCATGCATCGTGGGATGTCGT
TCTGGAGATCACATACTAATCATGGCTGAAAATAACACTTTTAAATATTT
CCCTTTCTGGTTTTGTGATTTACCCAAAATTGAAGAAATGTATCTGTCAG
ATAACTCAGTTACTCTTGAACCTTTTGATGACGAATTTTGCTCTAATGCT
CCGAATCTGAGAATCTTAGAAGCTGGTGCTAATTATATGAGCTCTATATC
AGAAAAATTTGGATTATTATCGAAATTGGAGCAAGTACATTTCGGGAGCA
CTATACCGGAATTGGAGAGAAGCCATTTTCAAAATGGGAATTGGATGGTA
AAACTACCAGATTCTTTTTGTGAACTGAAACATTTAAATAAAGCAAATAT
CAATGAAAATCAGCTGAATTGTTTACCAGAGCGTTTTGGTGAATTAGAAT
CATTAACTTGGTTAGATCTTGGTCAAAATATGATACGCCATCTACCGAGT
ACATTTTGTGAATTGAGAAATCTGGAGTTTTTACAACTGTCGAAAAACCA
ATTGGAGGAATTGCCCGAGGAGATTGGAAATTTTCAGAAATTAATCGAAC
TGAGGCTTGATAATAATGTGTTGAAAGCTGTTCCTGATTCATTAGGTACC
ATCAAAGGTTTACAGGCTTTGGATTTGTTTAGCAATGAACTTGAAGCATT
ACCAGAGGTGATTTTCCAACTGAAGAAATTGACCAGATTGGATTTGGATC
GCAACAATTTCAACATGTCTTTAGCTGATGTTCCAAAAATCACACCAGCT
AACGAAAGAAGAAGACCTACCGGATCAAAAGCAAACAGCGTCACCATAAC
CGAAGAAAGCGAGCCTCGTTTCGATGACGACAGTGAAAACTTGATAATCA
CCCCTAGCAACGAACAAATAATAATTACTAAACAAAATGGTAGCTTTTCG
ACCGCGTTTGACCCCAACGAAGAAGACTGGGACGAGGAAATTAAAATTAA
CACTGAATATAAATCGATCTTATTGACTTGTGATGAACGTCAAATATCTA
ACAAGGAGACTCCACTGACTGATTTTCAAAAATTTGTGAACCAGTATCCA
CCAGCTAAACAATGCTTCAGTTCAACAGGTTTTTACGAATCGTTTGTTCA
TGTGAAGAAGAATCGAGAGAACGTTAAAACGTCGTTTAATTCGGGTGATA
CGAATGTGTTTATTGTCGAAGGGCAATTTGATGATGCTGACTAGGTATTA
ACTATCCAGAACGTGATCCGAAACTAAAGAACAACTGGCGTGGACGTACC
AGACAAGTACAGATGGACAACACTGAAGTCATCGAGTATAAAGATGAAGG
GGAAGAAGACACTATTGTAGAAGAAGAATGGAATTACCAAGCATTGCGCA
CCGCCATGCATCGTGGGATGTCGTTCTGGAGATCACATACTAATCATGGC
TGAAAATAACACTTTTAAATATTTCCCTTTCTGGTTTTGTGATTTACCCA
AAATTGAAGAAATGTATCTGTCAGATAACTCAGTTACTCTTGAACCTTTT
GATGACGAATTTTGCTCTAATGCTCCGAATCTGAGAATCTTAGAAGCTGG
TGCTAATTATATGAGCTCTATATCAGAAAAATTTGGATTATTATCGAAAT
TGGAGCAAGTACATTTCGGGAGCACTATACCGGAATTGGAGAGAAGCCAT
TTTCAAAATGGGAATTGGATGGTAAAACTACCAGATTCTTTTTGTGAACT
GAAACATTTAAATAAAGCAAATATCAATGAAAATCAGCTGAATTGTTTAC
CAGAGCGTTTTGGTGAATTAGAATCATTAACTTGGTTAGATCTTGGTCAA
AATATGATACGCCATCTACCGAGTACATTTTGTGAATTGAGAAATCTGGA
GTTTTTACAACTGTCGAAAAACCAATTGGAGGAATTGCCCGAGGAGATTG
GAAATTTTCAGAAATTAATCGAACTGAGGCTTGATAATAATGTGTTGAAA
GCTGTTCCTGATTCATTAGGTACCATCAAAGGTTTACAGGCTTTGGATTT
GTTTAGCAATGAACTTGAAGCATTACCAGAGGTGATTTTCCAACTGAAGA
AATTGACCAGATTGGATTTGGATCGCAACAATTTCAACATGTCTTTAGCT
GATGTTCCAAAAATCACACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070117-exon-scaffold_513-1575043694:414527..414735 | TCONS_00070117-exon-scaffold_513-1575043694:414527..414735 | Clytia hemisphaerica | exon |
| TCONS_00070117-exon-scaffold_513-1575043694:413330..414287 | TCONS_00070117-exon-scaffold_513-1575043694:413330..414287 | Clytia hemisphaerica | exon |
| TCONS_00070117-exon-scaffold_513-1575043694:412813..413013 | TCONS_00070117-exon-scaffold_513-1575043694:412813..413013 | Clytia hemisphaerica | exon |
| TCONS_00070117-exon-scaffold_513-1575043694:411595..412417 | TCONS_00070117-exon-scaffold_513-1575043694:411595..412417 | Clytia hemisphaerica | exon |
| TCONS_00070117-exon-scaffold_513-1510915933:414527..414735 | TCONS_00070117-exon-scaffold_513-1510915933:414527..414735 | Clytia hemisphaerica | exon |
| TCONS_00070117-exon-scaffold_513-1510915933:413330..414287 | TCONS_00070117-exon-scaffold_513-1510915933:413330..414287 | Clytia hemisphaerica | exon |
| TCONS_00070117-exon-scaffold_513-1510915933:412813..413013 | TCONS_00070117-exon-scaffold_513-1510915933:412813..413013 | Clytia hemisphaerica | exon |
| TCONS_00070117-exon-scaffold_513-1510915933:411595..412417 | TCONS_00070117-exon-scaffold_513-1510915933:411595..412417 | Clytia hemisphaerica | exon |
| TCONS_00070117-exon-scaffold_513-1491911889:414527..414735 | TCONS_00070117-exon-scaffold_513-1491911889:414527..414735 | Clytia hemisphaerica | exon |
| TCONS_00070117-exon-scaffold_513-1491911889:413330..414287 | TCONS_00070117-exon-scaffold_513-1491911889:413330..414287 | Clytia hemisphaerica | exon |
| TCONS_00070117-exon-scaffold_513-1491911889:412813..413013 | TCONS_00070117-exon-scaffold_513-1491911889:412813..413013 | Clytia hemisphaerica | exon |
| TCONS_00070117-exon-scaffold_513-1491911889:411595..412417 | TCONS_00070117-exon-scaffold_513-1491911889:411595..412417 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:411595..414735 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00070117 vs. Swiss-Prot (Human)
Match: ERBIN (Erbin OS=Homo sapiens GN=ERBIN PE=1 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 4.001e-30 Identity = 91/293 (31.06%), Postives = 146/293 (49.83%), Query Frame = 3
Query: 246 NKLEVLSEDIGCAKKLRILNLNHNQLLTLPESISDLEAVEILDLSNNLLKELPERFASSKRLVKFMAENNTFKYFPFWFCDLPKIEEMYLSDNSVTLEPFDDEFCSNAPNLRILEAGANYMSSISEKFGLLSKLEQVHFGSTIPELERSHFQNGNWMVKLPDSFCELKHLNKANINENQLNCLPERFGELESLTWLDLGQNMIRHLPSTFCELRNLEFLQLSKNQLEELPEEIGNFQKLIELRLDNNVLKAVPDSLGTIKGLQALDLFSNELEALPEVIFQLKKLTRLDLDRN 1124
N++E L + + + L L+L N L TLP SI++L + LD+S N ++E PE + K L A N P F L + ++YL+D + P + L+ILE N + + + L++LE++ GS N ++P+ +L L + ++ N+L +P G L+ LT+LD+ +N I + NL+ L LS N L++LPE IG+ + + L++D N L +PDS+G + ++ LD NE+EALP I QL L D N
Sbjct: 56 NQIEELPKQLFNCQSLHKLSLPDNDLTTLPASIANLINLRELDVSKNGIQEFPENIKNCKVLTIVEASVNPISKLPDGFSQLLNLTQLYLNDAFLEFLPAN---FGRLTKLQILELRENQLKMLPKTMNRLTQLERLDLGS-------------NEFTEVPEVLEQLSGLKEFWMDANRLTFIPGFIGSLKQLTYLDVSKNNIEMVEEGISTCENLQDLLLSSNSLQQLPETIGSLKNITTLKIDENQLMYLPDSIGGLISVEELDCSFNEVEALPSSIGQLTNLRTFAADHN 332 HSP 2 Score: 112.464 bits (280), Expect = 3.058e-25 Identity = 92/309 (29.77%), Postives = 150/309 (48.54%), Query Frame = 3
Query: 198 SVLVNLEHLEIFEATNNKLEVLSEDIGCAKKLRILNLNHNQLLTLPESISDLEAVEILDLSNNLLKELPERFASSKRLVKFMAENNTFKYFPFWFCDLPKIEEMYLSDNSVTLEPFDDEFCSNAPNLRILEAGANYMSSISEKFGLLSKLEQVHFGSTIPELERSHFQNGNWMVKLPDSFCELKHLNKANINENQLNCLPERFGELESLTWLDLGQNMIRHLPSTFCELRNLEFLQLSKNQLEELPEEIGNFQKLIELRLDNNVLKAVPDSLGTIKGLQALDLFSNELEALPEVIFQLKKLTRLDLDRN 1124
S L+NL L + +A LE L + G KL+IL L NQL LP++++ L +E LDL +N E+PE L +F + N + P + L ++ + +S N++ + +E S NL+ L LLS N + +LP++ LK++ I+ENQL LP+ G L S+ LD N + LPS+ +L NL N L++LP EIG+++ + L L +N L+ +P+ +G ++ L+ ++L N L+ LP +L++LT + L N
Sbjct: 135 SQLLNLTQLYLNDAF---LEFLPANFGRLTKLQILELRENQLKMLPKTMNRLTQLERLDLGSNEFTEVPEVLEQLSGLKEFWMDANRLTFIPGFIGSLKQLTYLDVSKNNIEMV---EEGISTCENLQDL---------------LLS---------------------SNSLQQLPETIGSLKNITTLKIDENQLMYLPDSIGGLISVEELDCSFNEVEALPSSIGQLTNLRTFAADHNYLQQLPPEIGSWKNITVLFLHSNKLETLPEEMGDMQKLKVINLSDNRLKNLPFSFTKLQQLTAMWLSDN 401 HSP 3 Score: 94.3597 bits (233), Expect = 1.207e-19 Identity = 89/315 (28.25%), Postives = 130/315 (41.27%), Query Frame = 3
Query: 276 GCAKKLRILNLNHNQLLTLPESISDLE-AVEILDLSNNLLKELPERFASSKRLVKFMAENNTFKYFPFWFCDLPKIEEMYLSDNSVTLEPFDDEFCSNAPNLRILEAGANYMSSISEKFGLLSKLEQVHFGSTIPELERSHFQNGNWMVKLPDSFCELKHLNKANINENQLNCLPERFGELESLTWLDLGQNMIRHLPSTFCELRNLEFLQLSKNQLEELPEEIGNFQKLIELRLDNNVLKAVPDSLGTIKGLQALD-----------------------LFSNELEALPEVIFQLKKLTRLDLDRNNFNMSLAD 1148
G + + L+ +H L +P+ I E +E L L N ++ELP++ + + L K +N P +L + E+ +S N + P E N L I+EA N +S KLPD F +L +L + +N+ L LP FG L L L+L +N ++ LP T L LE L L N+ E+PE + L E +D N L +P +G++K L LD L SN L+ LPE I LK +T L +D N M L D
Sbjct: 19 GEEETVTTLDYSHCSLEQVPKEIFTFEKTLEELYLDANQIEELPKQLFNCQSLHKLSLPDNDLTTLPASIANLINLRELDVSKNGIQEFP---ENIKNCKVLTIVEASVNPIS------------------------------------KLPDGFSQLLNLTQLYLNDAFLEFLPANFGRLTKLQILELRENQLKMLPKTMNRLTQLERLDLGSNEFTEVPEVLEQLSGLKEFWMDANRLTFIPGFIGSLKQLTYLDVSKNNIEMVEEGISTCENLQDLLLSSNSLQQLPETIGSLKNITTLKIDENQL-MYLPD 293
The following BLAST results are available for this feature:
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