|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070144 ID=TCONS_00070144|Name=TCONS_00070144|organism=Clytia hemisphaerica|type=transcript|length=1018bp
NNATATCGTTGCAGAACCCAGTGTGATTTGTCTAGCTTGACCGAGTTGTA
CATCTTTTGCACATCTGTGTGGAATCCGAATCTGTATCCCCTCCACCGAA
GGAAGATGTTGAGAAGCTTGTTCATATTGTTTCTCCCCTTAGCGATGATG
TCATTTAGGGAAAAACCGCTCTTGGTTGGCATCGAAGCATCAAAAACAAC
ACGACAAGGTGTTGATACAGAGTTTTCTTTTCAGACTGCTCTCCATGGGA
TGAAGTTCTGGATATTAGATTGATGAAGAAGGTCTTGGTCTGCTTGAGAA
AGCTTTTTTACATAATCAACATACCCTAATGATTGAAGTTTCTCTTCAGA
TTTGATGATGTCACCTTTGTCATCAGGGTTTTTCTCCAGACGTTTGAGCT
TTTGATTGAAGACTTGAAGAGCGATGCCACGATTTGGTTGAAGACGATCT
GTGCTAGCAATGAGAGGAAGGGTTGCTGTTGAACTTCACTCCTTGATGTT
GACTGTGACAGAGTTGTTGATAATCTCTTGCTCTGCCTCCTCTTTGATGC
TACATATGTCGTTGGGTGATTCTTTGCAGGTTGAACAGTCTCTGCATTTG
GTACATCGATAAGTGATTGAGCTTCCGGCTTCCTCAACAGAGTTGAAGAA
GTGCATTAGATTTGTTGTATCGTCTTGGACATCTCCAAAATGATTGTTGT
AGCCTAGAAGACGGACATCTGGATTGACGTGGCATCCAAAGGAGTAGAGT
CTGAGTTGATTGGTGACaaaattggttgattgattttggtgaatgaaaTT
GAATACCTGATGTGGTCCTCCAATCAAACTAAAGGAACCATCGTTACTTT
CGAAGGATGACTCATAGATGGTGAGAGCTGATAGCATTTGGAAAATGGGC
TTTGGAAAATGACATAGATATTTGATACCAATGATGAAGTCGACATCACC
ACCGACCTTCTCTGGAACCGTTGGAAGTGTTGATGCATTGCCTCCATTCG
TAATGAAAGCTGTCTTGN Run BLAST on NCBI protein sequence of TCONS_00070144-protein >TCONS_00070144-protein ID=TCONS_00070144-protein|Name=TCONS_00070144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
KTAFITNGGNASTLPTVPEKVGGDVDFIIGIKYLCHFPKPIFQMLSALTI
YESSFESNDGSFSLIGGPHQVFNFIHQNQSTNFVTNQLRLYSFGCHVNPD
VRLLGYNNHFGDVQDDTTNLMHFFNSVEEAGSSITYRCTKCRDCSTCKES
PNDICSIKEEAEQEIINNSVTVNIKE Run BLAST on NCBI transcript from alignment at scaffold_513:296919..297936 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070144 ID=TCONS_00070144|Name=TCONS_00070144|organism=Clytia hemisphaerica|type=transcript|length=1018bp|location=Sequence derived from alignment at scaffold_513:296919..297936 (Clytia hemisphaerica)
NCAAGACAGCTTTCATTACGAATGGAGGCAATGCATCAACACTTCCAACG
GTTCCAGAGAAGGTCGGTGGTGATGTCGACTTCATCATTGGTATCAAATA
TCTATGTCATTTTCCAAAGCCCATTTTCCAAATGCTATCAGCTCTCACCA
TCTATGAGTCATCCTTCGAAAGTAACGATGGTTCCTTTAGTTTGATTGGA
GGACCACATCAGGTATTCAAtttcattcaccaaaatcaatcaaccaattt
tGTCACCAATCAACTCAGACTCTACTCCTTTGGATGCCACGTCAATCCAG
ATGTCCGTCTTCTAGGCTACAACAATCATTTTGGAGATGTCCAAGACGAT
ACAACAAATCTAATGCACTTCTTCAACTCTGTTGAGGAAGCCGGAAGCTC
AATCACTTATCGATGTACCAAATGCAGAGACTGTTCAACCTGCAAAGAAT
CACCCAACGACATATGTAGCATCAAAGAGGAGGCAGAGCAAGAGATTATC
AACAACTCTGTCACAGTCAACATCAAGGAGTGAAGTTCAACAGCAACCCT
TCCTCTCATTGCTAGCACAGATCGTCTTCAACCAAATCGTGGCATCGCTC
TTCAAGTCTTCAATCAAAAGCTCAAACGTCTGGAGAAAAACCCTGATGAC
AAAGGTGACATCATCAAATCTGAAGAGAAACTTCAATCATTAGGGTATGT
TGATTATGTAAAAAAGCTTTCTCAAGCAGACCAAGACCTTCTTCATCAAT
CTAATATCCAGAACTTCATCCCATGGAGAGCAGTCTGAAAAGAAAACTCT
GTATCAACACCTTGTCGTGTTGTTTTTGATGCTTCGATGCCAACCAAGAG
CGGTTTTTCCCTAAATGACATCATCGCTAAGGGGAGAAACAATATGAACA
AGCTTCTCAACATCTTCCTTCGGTGGAGGGGATACAGATTCGGATTCCAC
ACAGATGTGCAAAAGATGTACAACTCGGTCAAGCTAGACAAATCACACTG
GGTTCTGCAACGATATNN Coding sequence (CDS) from alignment at scaffold_513:296919..297936 >TCONS_00070144 ID=TCONS_00070144|Name=TCONS_00070144|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_513:296919..297936 (Clytia hemisphaerica)
AAGACAGCTTTCATTACGAATGGAGGCAATGCATCAACACTTCCAACGGT
TCCAGAGAAGGTCGGTGGTGATGTCGACTTCATCATTGGTATCAAATATC
TATGTCATTTTCCAAAGCCCATTTTCCAAATGCTATCAGCTCTCACCATC
TATGAGTCATCCTTCGAAAGTAACGATGGTTCCTTTAGTTTGATTGGAGG
ACCACATCAGGTATTCAAtttcattcaccaaaatcaatcaaccaattttG
TCACCAATCAACTCAGACTCTACTCCTTTGGATGCCACGTCAATCCAGAT
GTCCGTCTTCTAGGCTACAACAATCATTTTGGAGATGTCCAAGACGATAC
AACAAATCTAATGCACTTCTTCAACTCTGTTGAGGAAGCCGGAAGCTCAA
TCACTTATCGATGTACCAAATGCAGAGACTGTTCAACCTGCAAAGAATCA
CCCAACGACATATGTAGCATCAAAGAGGAGGCAGAGCAAGAGATTATCAA
CAACTCTGTCACAGTCAACATCAAGGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070144-exon-scaffold_513-1491911889:296919..297936 | TCONS_00070144-exon-scaffold_513-1491911889:296919..297936 | Clytia hemisphaerica | exon |
| TCONS_00070144-exon-scaffold_513-1510915933:296919..297936 | TCONS_00070144-exon-scaffold_513-1510915933:296919..297936 | Clytia hemisphaerica | exon |
| TCONS_00070144-exon-scaffold_513-1575043694:296919..297936 | TCONS_00070144-exon-scaffold_513-1575043694:296919..297936 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:296919..297936 . |
Blast
The following BLAST results are available for this feature:
|
