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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070220 ID=TCONS_00070220|Name=TCONS_00070220|organism=Clytia hemisphaerica|type=transcript|length=1040bp
TAAGCACTGTCAACAACAAAGTTGAGTATGGTTACGTTAGTATGGTAACG
CACGATAACCACATTCTCAATGTGACAGCAATCAACATATCATACCACAA
AACTTCCCAAGAATGCATTCGAACTTGTCTCAATTTTACAAATTGTTGGA
GCATCAATTTGAAGAAACAGCAAAATAATGAGATTTACGAATGTCATATT
TTGGATACTGATCGATTTCGAAAcgcgtcaaattttgtttcttcctCTAC
AGgaaattctcatttttctcttgatCATGATTGTGAATGGGAGGAGACAT
GCATCAACCCAAACAAAATATGTATTCCAAACTACTCTGATGGTTCTTAT
AAATGTGTTTGCGAGCCTATTGGTAAATACGACATTCATTGCATAAACAG
AAACATTGCATTTCAAAGACCAGTCAGTTTATCGGGACTAGAACCGAATT
CTGGGAAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATATGTGGT
GATCTGTCAACCAAACTTGTCCACTCGAAAATGGGAACTATGGAAATTTG
GCTGAGAATTGATTTGGGTGGAatgaaacaaattaaatttattgatattt
tcGATCGTACAATAGGAGCACCTCATCATCAACGACTTGCTTTTACAGAT
ATTATTGTGTATGGTCAAAATCCTGTTGATAATCGTCAGCTTTGCAGTAC
TATAACATTGCAAGATACTGAAAATGGTGATAAGGTTTTTAAAGTTTGTA
ACGAGGTCTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCAAATGGG
TGGCAAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAAATTG
AACTTAATTATTAATCTTACTATATCATACAGGGTGTTTCACAAAAAAGT
ATACTGAGAAAGTaaggcgatttttagaaagagaGAAATACAAAGTCGTA
AATACAAAAGGGTATGACTTTTCGACATTGGAAATCAATTAAGTTATCCA
AAGATAAGGTAACTCAAAACTTTTGTTCATTTAAAAGACT Run BLAST on NCBI protein sequence of TCONS_00070220-protein >TCONS_00070220-protein ID=TCONS_00070220-protein|Name=TCONS_00070220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
STVNNKVEYGYVSMVTHDNHILNVTAINISYHKTSQECIRTCLNFTNCWS
INLKKQQNNEIYECHILDTDRFRNASNFVSSSTGNSHFSLDHDCEWEETC
INPNKICIPNYSDGSYKCVCEPIGKYDIHCINRNIAFQRPVSLSGLEPNS
GKPAFVTDGYKGEICGDLSTKLVHSKMGTMEIWLRIDLGGMKQIKFIDIF
DRTIGAPHHQRLAFTDIIVYGQNPVDNRQLCSTITLQDTENGDKVFKVCN
EVLTGSGVELYKAPNGWQMIHLCEIAVYGPTN Run BLAST on NCBI transcript from alignment at scaffold_516:375459..379548+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070220 ID=TCONS_00070220|Name=TCONS_00070220|organism=Clytia hemisphaerica|type=transcript|length=4090bp|location=Sequence derived from alignment at scaffold_516:375459..379548+ (Clytia hemisphaerica)
TAAGCACTGTCAACAACAAAGGTGAGATACTTCGTTTATCTAACTCATAT
TTTACCTAGTCTTATAcatttacacccctttctcacagccctgttatgaa
ttttttcagtcaacggggataaaaaaacgtactgaaactcgatggggatt
aatATTCACATAGTTTTTATGGCTagagatttcaattcttttgttttcaa
gtcataaacttcagtggggatgggaaaaatggtAAATATTTATTtcgcag
tgaggattggtttgtttgattattttcactgggaacgatattttggccaa
ttcttccagtgggaaggggttctagtgggtctgtgaaaagggggtgtaCA
TTTATGCTGTCTCAAGGTGCGTTAGTCAACAAGTTTGAAAAACCATAGTC
TTATAAAAAATCCACGGTTTGGGAGTCTTTTATTTCTTTCTAACaacccc
ttttcacagacctgTTAGgattttttagccagtgggggTGAAATTAACGG
ATTCAAACGGAATTGAGATTGATGTTCCTATGTTTTTTATGAATTCCATT
GTCTGTTTTCAAGGCAGAAAaatcagtggggatggaaaaaaagcacaata
ttttatagtgaggatttgtttatttgattactttCAGCGGCGACAAAAAT
CGGggtataattttccattgggaacgatattttggctTATCTTTCCTGTC
AgagggggtcccaccgggtctgtgagaaacaGGTGTATCTTATCATTGAA
TTAAAAAGTTCAAATCAATCTTTTAACTATTGTTTcactgaaaaactgaa
aactggtttctacaaaacatcactgcTAGGGAGAAAACTATAGATagcgt
actttcaacacaaaaagtttcagcctcaaatagaccttatcggagtttta
gatttttctaaaaaagcaatacattgtaggattgtttcgagtgtattaca
atagaaatctcttaggaattcctggagggaattatattgtaatgatatgc
gtaagtcaagatgacgtatatttttaacggaagcacccgaaaaaGCCGGT
TTatgacctctgtgtttctatttttagtaacagagagggttcgaatcccg
gcttttttagggtgtttccgctagaaaaatgacttacgcatatcaagaat
acactcgaaacaatgcatcgcttttttagaaaaatcaaaactccgataag
gtctatttacctaaattttcagatagagggtacctttttttgtaggtttt
aaatGGTATCCATACTGGTAATAGTATTATTCTCTTTCAGTTGAGTATGG
TTACGTTAGAATGGTAAANCCGATGAGGTCTATTTACCTAAATTTTCAGA
GagagggtaccttttttgtaAGTTTTAAATGGTATCCATACTGGTAATAG
TATTATTCTCTTTCAGTTGAGTATGGTTACGTTAGTATGGTAACGCACGA
TAACCACATTCTCAATGTGACAGCAATCAACATATCATACCACAAAACTT
CCCAAGAATGCATTCGAACTTGTCTCAATTTTACAAATTGTTGGAGCATC
AATTTGAAGAAACAGCAAAATAATGAGATTTACGAATGTCATATTTTGGA
TACTGATCGATTTCGAAAcgcgtcaaattttgtttcttcctCTACAGgaa
attctcatttttctcttgatgtgagtaaaataataaaataacaaaCTAGT
TCCCAGTCCTTTTGATGTGCTAACGtcatcagtaaaataaaaaagtaaaa
gaattttATAATGACAGGGAATGACCCACCTTTTATACTAGAACCGAAAT
TCCACCGGGGTAATCATAAAGTTTTTTATGGTCCAAAGTTTTTGGAAGTT
TTGACTACTTTAAGCAAATAAGCCGACATTTCCTCACCAGTAGGAACAGA
CTTCTGTCATTTTCTTGGTAAAAActttctttgttattttttacaGCATG
ATTGTGAATGGGAGGAGACATGCATCAACCCAAACAAAATATGTATTCCA
AACTACTCTGATGGTTCTTATAAATGTGTTTGCGAGCCTATTGGTAAATA
CGACATTCATTGCATAAGTAAGTATTTTCAATGAGATAAAATGAATTAAG
GCTATAAGATTccgaaaatgtaaatttttttgacaattttaagATGAACA
GTAAGATTCAGTATAGaacaaatttatttcaatttttgaaaaaagcactC
TCCCATTTTGCTATTACGAGATTCGGTAGTTTGTGTGCTTTGACTCAAGA
TCTTTGTACCAGTTGTCATGCATACTTTGCTCTCTGATGAATTAAACCTT
CCCCTGCAATAATCATACACTGTGATATGATATTCATGGTATGAGATTGA
CAAATGGTACAAAATTTTCGATCTACAGTTACGTAATGGATTTCTAATTA
GGATAAGGATATGTGTATTATGTTCTGAGATTACTTGATttcaccatgaa
catataaacgactggacatccatctcctttctctttttaaagataacaca
gctagcttcgttgccgcctcgttaaaaacataaaatgaaacaatagattt
tgatgatataccacttgggaataccttgctaacaacgtcaaaacttcgac
aaaagtctctgttgttctactcttttcaagtcttttatctatatcataac
aaagataacagaggcaaattatcgtcagcttgtcaaaattccgactaata
tttctaaattttgacttaaaagtgtctaataattttagagagtgtctaat
ttcgatattcttattacaAAGGCTCTCAACtatggcaagctattttttca
agtcataaaaaaaattattggagtgacaaaagggattaaaaagtatacag
gcagttgaaattctgcatttcagagttgaaaatgttgataaagtatatta
caaacttgtaaaaaaattcgaaaataaccTTTTTGTACATTatgagtaat
gttcaagctctatcaatctttttacctaaataattcaatacaaaataaac
tATGACGGAATATtctcggatttttcataccaattttgaaatacaggcgg
caatgaagctcgcttcaaagagacaataaaagatagatgtccagtcgttt
gtATGTTCATGATTTCACtgaatctttccttgatttgatTTCTACAAACT
GTTTTCATCCAAGAACTTGGATGATTGTTATGGCTAATTTTCTTGTGGGA
TGAGTGAAATGGGTTTGATTGAAGGGTTTCAAGGAAATAGAGGAAAAGTA
GCTCAGGGATACAAAAACTATTTTACTCGGTTTTCACAGCTCACAATCCA
ACCCTTActccgtgtatcccaggctttatttatgttCCTGATGGACGCTA
GAGCGTACGTATATTATCTGgagctatcagtaagcatcaataAGCCGATA
ATGATACACTGTTTGTTCACGATCACCAATATATATTTCTTTTCAGACAG
AAACATTGCATTTCAAAGACCAGTCAGTTTATCGGGACTAGAACCGAATT
CTGGGAAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATATGTGGT
GATCTGTCAACCAAACTTGTCCACTCGAAAATGGGAACTATGGAAATTTG
GCTGAGAATTGATTTGGGTGGAatgaaacaaattaaatttattgatattt
tcGATCGTACAATAGGAGCACCTCATCATCAACGACTTGCTTTTACAGAT
ATTATTGTGTATGGTCAAAATCCTGTTGATAATCGTCAGCTTTGCAGTAC
TATAACATTGCAAGATACTGAAAATGGTGATAAGGTTTTTAAAGTTTGTA
ACGAGGTCTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCAAATGGG
TGGCAAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAAATTG
AACTTAATTATTAATCTTACTATATCATACAGGGTGTTTCACAAAAAAGT
ATACTGAGAAAGTaaggcgatttttagaaagagaGAAATACAAAGTCGTA
AATACAAAAGGGTATGACTTTTCGACATTGGAAATCAATTAAGTTATCCA
AAGATAAGGTAACTCAAAACTTTTGTTCATTTAAAAGACT Coding sequence (CDS) from alignment at scaffold_516:375459..379548+ >TCONS_00070220 ID=TCONS_00070220|Name=TCONS_00070220|organism=Clytia hemisphaerica|type=CDS|length=3396bp|location=Sequence derived from alignment at scaffold_516:375459..379548+ (Clytia hemisphaerica)
AGCACTGTCAACAACAAAGTTGAGTATGGTTACGTTAGTATGGTAACGCA
CGATAACCACATTCTCAATGTGACAGCAATCAACATATCATACCACAAAA
CTTCCCAAGAATGCATTCGAACTTGTCTCAATTTTACAAATTGTTGGAGC
ATCAATTTGAAGAAACAGCAAAATAATGAGATTTACGAATGTCATATTTT
GGATACTGATCGATTTCGAAAcgcgtcaaattttgtttcttcctCTACAG
gaaattctcatttttctcttgatCATGATTGTGAATGGGAGGAGACATGC
ATCAACCCAAACAAAATATGTATTCCAAACTACTCTGATGGTTCTTATAA
ATGTGTTTGCGAGCCTATTGGTAAATACGACATTCATTGCATAAACAGAA
ACATTGCATTTCAAAGACCAGTCAGTTTATCGGGACTAGAACCGAATTCT
GGGAAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATATGTGGTGA
TCTGTCAACCAAACTTGTCCACTCGAAAATGGGAACTATGGAAATTTGGC
TGAGAATTGATTTGGGTGGAatgaaacaaattaaatttattgatattttc
GATCGTACAATAGGAGCACCTCATCATCAACGACTTGCTTTTACAGATAT
TATTGTGTATGGTCAAAATCCTGTTGATAATCGTCAGCTTTGCAGTACTA
TAACATTGCAAGATACTGAAAATGGTGATAAGGTTTTTAAAGTTTGTAAC
GAGGTCTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCAAATGGGTG
GCAAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAAATTGAA
GCACTGTCAACAACAAAGTTGAGTATGGTTACGTTAGTATGGTAACGCAC
GATAACCACATTCTCAATGTGACAGCAATCAACATATCATACCACAAAAC
TTCCCAAGAATGCATTCGAACTTGTCTCAATTTTACAAATTGTTGGAGCA
TCAATTTGAAGAAACAGCAAAATAATGAGATTTACGAATGTCATATTTTG
GATACTGATCGATTTCGAAAcgcgtcaaattttgtttcttcctCTACAGg
aaattctcatttttctcttgatCATGATTGTGAATGGGAGGAGACATGCA
TCAACCCAAACAAAATATGTATTCCAAACTACTCTGATGGTTCTTATAAA
TGTGTTTGCGAGCCTATTGGTAAATACGACATTCATTGCATAAACAGAAA
CATTGCATTTCAAAGACCAGTCAGTTTATCGGGACTAGAACCGAATTCTG
GGAAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATATGTGGTGAT
CTGTCAACCAAACTTGTCCACTCGAAAATGGGAACTATGGAAATTTGGCT
GAGAATTGATTTGGGTGGAatgaaacaaattaaatttattgatattttcG
ATCGTACAATAGGAGCACCTCATCATCAACGACTTGCTTTTACAGATATT
ATTGTGTATGGTCAAAATCCTGTTGATAATCGTCAGCTTTGCAGTACTAT
AACATTGCAAGATACTGAAAATGGTGATAAGGTTTTTAAAGTTTGTAACG
AGGTCTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCAAATGGGTGG
CAAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAAATTGAAG
CACTGTCAACAACAAAGTTGAGTATGGTTACGTTAGTATGGTAACGCACG
ATAACCACATTCTCAATGTGACAGCAATCAACATATCATACCACAAAACT
TCCCAAGAATGCATTCGAACTTGTCTCAATTTTACAAATTGTTGGAGCAT
CAATTTGAAGAAACAGCAAAATAATGAGATTTACGAATGTCATATTTTGG
ATACTGATCGATTTCGAAAcgcgtcaaattttgtttcttcctCTACAGga
aattctcatttttctcttgatCATGATTGTGAATGGGAGGAGACATGCAT
CAACCCAAACAAAATATGTATTCCAAACTACTCTGATGGTTCTTATAAAT
GTGTTTGCGAGCCTATTGGTAAATACGACATTCATTGCATAAACAGAAAC
ATTGCATTTCAAAGACCAGTCAGTTTATCGGGACTAGAACCGAATTCTGG
GAAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATATGTGGTGATC
TGTCAACCAAACTTGTCCACTCGAAAATGGGAACTATGGAAATTTGGCTG
AGAATTGATTTGGGTGGAatgaaacaaattaaatttattgatattttcGA
TCGTACAATAGGAGCACCTCATCATCAACGACTTGCTTTTACAGATATTA
TTGTGTATGGTCAAAATCCTGTTGATAATCGTCAGCTTTGCAGTACTATA
ACATTGCAAGATACTGAAAATGGTGATAAGGTTTTTAAAGTTTGTAACGA
GGTCTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCAAATGGGTGGC
AAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAAATTGAAGC
ACTGTCAACAACAAAGTTGAGTATGGTTACGTTAGTATGGTAACGCACGA
TAACCACATTCTCAATGTGACAGCAATCAACATATCATACCACAAAACTT
CCCAAGAATGCATTCGAACTTGTCTCAATTTTACAAATTGTTGGAGCATC
AATTTGAAGAAACAGCAAAATAATGAGATTTACGAATGTCATATTTTGGA
TACTGATCGATTTCGAAAcgcgtcaaattttgtttcttcctCTACAGgaa
attctcatttttctcttgatCATGATTGTGAATGGGAGGAGACATGCATC
AACCCAAACAAAATATGTATTCCAAACTACTCTGATGGTTCTTATAAATG
TGTTTGCGAGCCTATTGGTAAATACGACATTCATTGCATAAACAGAAACA
TTGCATTTCAAAGACCAGTCAGTTTATCGGGACTAGAACCGAATTCTGGG
AAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATATGTGGTGATCT
GTCAACCAAACTTGTCCACTCGAAAATGGGAACTATGGAAATTTGGCTGA
GAATTGATTTGGGTGGAatgaaacaaattaaatttattgatattttcGAT
CGTACAATAGGAGCACCTCATCATCAACGACTTGCTTTTACAGATATTAT
TGTGTATGGTCAAAATCCTGTTGATAATCGTCAGCTTTGCAGTACTATAA
CATTGCAAGATACTGAAAATGGTGATAAGGTTTTTAAAGTTTGTAACGAG
GTCTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCAAATGGGTGGCA
AATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070220-exon-scaffold_516-1491911889:375459..375479 | TCONS_00070220-exon-scaffold_516-1491911889:375459..375479 | Clytia hemisphaerica | exon |
| TCONS_00070220-exon-scaffold_516-1510915933:375459..375479 | TCONS_00070220-exon-scaffold_516-1510915933:375459..375479 | Clytia hemisphaerica | exon |
| TCONS_00070220-exon-scaffold_516-1575043694:375459..375479 | TCONS_00070220-exon-scaffold_516-1575043694:375459..375479 | Clytia hemisphaerica | exon |
| TCONS_00070220-exon-scaffold_516-1491911889:376875..377128 | TCONS_00070220-exon-scaffold_516-1491911889:376875..377128 | Clytia hemisphaerica | exon |
| TCONS_00070220-exon-scaffold_516-1510915933:376875..377128 | TCONS_00070220-exon-scaffold_516-1510915933:376875..377128 | Clytia hemisphaerica | exon |
| TCONS_00070220-exon-scaffold_516-1575043694:376875..377128 | TCONS_00070220-exon-scaffold_516-1575043694:376875..377128 | Clytia hemisphaerica | exon |
| TCONS_00070220-exon-scaffold_516-1491911889:377405..377525 | TCONS_00070220-exon-scaffold_516-1491911889:377405..377525 | Clytia hemisphaerica | exon |
| TCONS_00070220-exon-scaffold_516-1510915933:377405..377525 | TCONS_00070220-exon-scaffold_516-1510915933:377405..377525 | Clytia hemisphaerica | exon |
| TCONS_00070220-exon-scaffold_516-1575043694:377405..377525 | TCONS_00070220-exon-scaffold_516-1575043694:377405..377525 | Clytia hemisphaerica | exon |
| TCONS_00070220-exon-scaffold_516-1491911889:378905..379548 | TCONS_00070220-exon-scaffold_516-1491911889:378905..379548 | Clytia hemisphaerica | exon |
| TCONS_00070220-exon-scaffold_516-1510915933:378905..379548 | TCONS_00070220-exon-scaffold_516-1510915933:378905..379548 | Clytia hemisphaerica | exon |
| TCONS_00070220-exon-scaffold_516-1575043694:378905..379548 | TCONS_00070220-exon-scaffold_516-1575043694:378905..379548 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:375459..379548 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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