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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070226 ID=TCONS_00070226|Name=TCONS_00070226|organism=Clytia hemisphaerica|type=transcript|length=1304bpRun BLAST on NCBI protein sequence of TCONS_00070226-protein >TCONS_00070226-protein ID=TCONS_00070226-protein|Name=TCONS_00070226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp MANYPGSGFPNDFDQHQFITPLGFSQPRISPVVNPEEKGLENPPPLPQRNRun BLAST on NCBI transcript from alignment at scaffold_516:45019..63151- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070226 ID=TCONS_00070226|Name=TCONS_00070226|organism=Clytia hemisphaerica|type=transcript|length=18133bp|location=Sequence derived from alignment at scaffold_516:45019..63151- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_516:45019..63151- >TCONS_00070226 ID=TCONS_00070226|Name=TCONS_00070226|organism=Clytia hemisphaerica|type=CDS|length=11340bp|location=Sequence derived from alignment at scaffold_516:45019..63151- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070226 vs. Swiss-Prot (Human)
Match: PEX13 (Peroxisomal membrane protein PEX13 OS=Homo sapiens GN=PEX13 PE=1 SV=2) HSP 1 Score: 147.902 bits (372), Expect = 2.264e-39 Identity = 77/226 (34.07%), Postives = 136/226 (60.18%), Query Frame = 3
Query: 360 ENASQNAFQSAQSFIGAFSSISMMLESTLFAVQNSVRAIAGVADQFGHLRHYLLS--SAASFYRLVNYYYKKILCVLRLKQPDTQDERFWQDAMSGRS--GTEE-----SRLYASLLFFSLVIATPWFIWKLLKSINFQQKQEEKWFEGSGEHFVAEVKFPFVARSRDEMNLSKNTIVRLAPKARQPNIKGWLLAS-DGENQGLVPANYIKVLGKNRKESTLPTTQ 1007
E +S+ AFQS +S + AF+S+SMM+++T AV NS RA+ VA+ F L+ + SA + R + Y Y+++ +L L++ +++E W ++ + G E+ ++ + LFF++++ P+ IWKLL + + + W G +H VA ++ F A S +E++ ++ LA K +QP ++GWLLAS DG+ GL+PANY+K+LGK + T+ +++
Sbjct: 123 EESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQRMLGLRR-GSENEDLWAESEGTVACLGAEDRAATSAKSWPIFLFFAVILGGPYLIWKLLSTHSDEVTDSINWASGEDDHVVARAEYDFAAVSEEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRKGRKTVESSK 347 The following BLAST results are available for this feature:
BLAST of TCONS_00070226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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