TCONS_00070286 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070286
Unique Name	TCONS_00070286
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1072

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_52:16321..23454+

transcript sequence

>TCONS_00070286 ID=TCONS_00070286|Name=TCONS_00070286|organism=Clytia hemisphaerica|type=transcript|length=1072bp
AAGAGATCGCAAGTTGACAAGTAAAGACATCCTCAAGACAATTGTTCACC
GAACGACCAAGATATGATTGTCATCAACAAACCAGCCTCCATACCGGTCC
ATCCCTGTGGCCGGTACCGTCATAATACCGTGGTCTTCATTCTCGGAAAA
GACCACGGGCTAGAGCGGCTGCATACGATCCATCGAATCGACCGTTTGAC
ATCTGGTATACTTATGTTCGCCAAAACACCAGAGAAAGCTAAAGCAATGG
AGACAGCAGTTCACGGACGGAATGTGGAGAAAGTATACTACGCTCGCGTC
GAAGGTGATTTCCCTAGTGAAAGTATTGTCGTTGAAGAACCGTTATTAAC
CATGTCTCATAAAATCGGTGTTTGTCAAGTTCATGTAGACGGGAAACCAT
GCTCTACCACTTTTCACAAGATATCGTTCAATGGTAAAAGCAGCTTGGTT
CGTTGTTTACCACGTACAGGACGTATGCATCAGATACGAGTCCATTTGCA
ATGGCTTGGTCACCCCATTCTAAACGATCCGATTTACAATCATGCCACAG
CTTGGGGTGAAGGTGGTGGAAAGAAAGGGACAGAGATTGATGTCAAAAAG
GTGGTGGCTGAACTCATCCGAACACGTAAGGACAAGTCGTACGACGACGC
CACTGGTGGTCAGGACGAAAATAGAGCTACGGCAAAATCCGAGAAAGACA
ATAATAATCATCGTCAGTCGAAAAAGCTGAAAACAGACGACGGGGGTTCT
GTCGAAGTAAAAACGGAGATAACGTCTAATTCTTCGAATTCAATAGACGC
TGATGCTAATCAGAAAAGTAAAGTTCAAAATGGCTGTTCACTAAAAGGGG
TGAGAGAAACAGACAATATAAAAACGAACGGTACTTCAGACAAGTTAAGT
CATTTAAATATTCAGAAGGCAAACTCAACTGAGTGTGAAACAAACTCTAC
GACAGAGAGCGAAACTTCTGCAATGGAGAACAAAGTTAAAGACCTTTCTA
CTCTAAAATGTGAAGAAAATTCTAATAAGGAGAGTGTGGCGGAGAAGAGA
GAAGGAAGCTCTGGGAAGGAGG

Run BLAST on NCBI

transcript from alignment at scaffold_52:16321..23454+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070286 ID=TCONS_00070286|Name=TCONS_00070286|organism=Clytia hemisphaerica|type=transcript|length=7134bp|location=Sequence derived from alignment at scaffold_52:16321..23454+ (Clytia hemisphaerica)
AAGAGATCGCAAGTTGACAAGTAAAGACATCCTCAAGACAATTGTTCACC
GGTAAAAGCATGAGACTTTATGAGTTATTCCCACTGACCTTCATAAACCC
TTggccaagctatatccgccatctttaatcAGAGCTATCTTTATGAAAAA
GGGTTTCTGCAATGAATCCATTGCAGTGTTGAAGCCTTGCCTAATGTTGA
ACTTAACCCGAAAATCAATACTATGTGtgttgaatttttcaaatttgcaa
catttttgcaacttttcCAACGATTCGAACGTTCTACAGCCAAACTCACT
AAGTTAACTTTATATTTacgaatttgttttttttaatatggtAAGTGCAA
CCAACCATAGGAAATCGGGAAATAGGCAGGAAAGTCAGTAATCGGCAGAT
CGGGATCCCCCCGACAacaagaaagtaaacaaaacatttttgtcaacaaa
accaaaaaagAACTGAAAACCTTTTGTTTAAGGTGACACTACTGATTGGC
TGGGTTTGTCTTGCTACTTTGACTACATTGAATTGATTCAATTTGCTTTA
AAATTATCAACAACattaaaaagtgcaattaattTCAATAGGCAATTAAG
ATTAAAcattattctcaacttcagttgagttagaatctgagaatgtgtgt
ctgtctgtgtgtctgtctgtgtgtgtgtatgtcccaaaactttggggcag
cctggagacttcaaAAATTGTTCGATGTGGCTGAAATTTGGCACACTTGT
TCCTTGGGTGAATATCTGGAGTTTTTCTTTTTCATTTTTCAAAATTTCTG
ATTTTTGGGGCCTGGGGACGAGTTTTCGCCAAAACGAggctaaaactttg
gggcagcctggagacttcaaaaatggtcggatttggctgaaattttgcac
acttgttccttgggtgaatatctgggggtgttttttcccattttttaaaa
gttttgatttttggggactggggacgagtttttcgccaaaacgaggctaa
aactttggggcaggctggagacttcaaaaatagtcGGATTTGcttaaatt
ttgcacacttgttccttgggtgaatatctgggggtgctttttaaattttt
caaaaattttgatttttggggcctgggaaggagtttttttgccaaaacga
ggctaaagctttggagcagtctacaggcctccaaaatgatcggatttggt
tgaaattcggcacacttgttcatcgggtgaatatctgggggtctacacct
gggcctatgaatgatttgaagccactgaagttgagcccagtgcgttgcgc
acgttcgactattagaATAGAGAATTGACATTAAAGCAATAAAAGGAACT
TGTTCCAAACGTCTCTTCCAAAATCATTACACATTTCTTATCTCTAGACA
TGAACCACCTGTTGTGCACGAACCTTTCGAATTTCTACAGAACGACCAAG
ATATGATTGTCATCAACAAACCAGCCTCCATACCGGTCCATCCCTGTGGC
CGGTACCGTCATAATACCGTGGTCTTCATTCTCGGAAAAGACCACGGGCT
AGAGCGGCTGCATAGTATGTATGTTTATCTGTGGGCCATAGGTAGTTAGG
ACTGGTTGCGCTCTAGTAACGACTTCCGGTTGGTTAGACgcaaagatcga
attagagaagattttaaattgaagattttcaacatttttcaaaactttag
aCCAATAGTTAGTCgacattagcgcgcagtggccCTGATTACCCATCATG
CTTTGTGACTATGAAGTGACCTATTCGACTGACCGTGTTGTGGTAAACAG
TATGGAAATACTTAATTGTTGAATCCATCTTTTATGCGAATCTTAATCTG
TGTTGAGTCACGTCTCTACAATACGCATGTTGAAAGGTATAGAGTTTTTT
TAACGTAATTCCCGCCATTAtagaagcaaacgttcgaatctgtagagggg
atcccttacgcaaatcgaacgtttgcttccataatggcggaagttaCGTA
ATTTAACAAAACATGAGAAACCTCTATTTTTGTCTTGATTATTCTTCGAT
CATCCGATCGTTTTTACTCTTTCCTTTTGTTTTAGCGATCCATCGAATCG
ACCGTTTGACATCTGGTATACTTATGTTCGCCAAGTCAGTATTATTTCGA
CTTAAGCTAAATTATTTAAATACCATACgctggtctaatctcgacatccg
tcATCTAATTAGGACACCCTTCTTTACAGTTGGGAATAAAAGGACGGTCG
GAATAATACATCAGTCGGAGTTGCTGATAGAGAAACTATAATTTTGCTTA
GAAAAAATctttgtctatcagtgattccgacctttctattattcctatct
ttaaagaagggtgtcgaaattagatgaaggatgtcgaaattagacaaACT
CACGGTAGTATCTTTGAaactatatttttgtttttgcttagcgatcaggg
aggaaaaaatcttttgtctatcagtgattctgaccttcctattattccta
tctttaaagaagggtgtcgaaattagatgaaggatgtcgaaattagacaa
ACTCACGGTAGTATCTTTGAaactatatttttgtttttgcttagcgatca
gataggaaaaaatcttttgtgtatcagtgatttcgaccttctcattattc
ctatctttaaagaagaaTATCGGAACTAgaagaggggtgtcgacattaga
ccaacttacagtagtATTTTTGAATCCTTCACAACAGATGAATATCTGGT
CAGAAGCAGAATAAGATACCCAACCTCGTCCACGTGTAACCTAGGCTTTA
TTTACGATAaatgatggacgccagagattATCATTTGGGTGTcaattgtc
tgtacacaaacccgatatctacggcttatttcaaaattcattgccgtata
gggtctgttgtcattgtcttcaaaccgaccgctgcgatggagtgttggta
aGAGAGGGGAGACGAAGAGAGAaatgttgctatttataaatcatacttca
tcgcagaggtctccgtgggggaatttttttatcaaacagacaatgcgcac
agagtgtactacgaagcgataaacgtgagatacactctggcaCAGAGTAG
GTATAAgtaagtatcaagtatcaaaagCCGATAATACACGGGGTACGAGG
TTTTTGGCCACCGTATCAGGTAAAATGGTCTGTTTCTCAAATTTTTACCC
CCTTTTCTTCGATAAGATAAGATTTCTTTCACCGAAAGAAAAACACATTT
AGTATCTATCTTGAaacaacccagctggcacacaacgttttttcgacgtt
tatctaacgttcacaacgtccatataacgttagatgaacgttgaaacaac
gttgtgggcCAGCTGGGAAAGGGCAAAATGTTCCCTTTCAGAACACCAGA
GAAAGCTAAAGCAATGGAGACAGCAGTTCACGGACGGAATGTGGAGAAAG
TATACTACGCTCGCGTCGAAGGTGATTTCCCTAGGTAAGTGGAAAGTTGT
TTGTTTTTGTCAATACTGTTTGGCAACATATATACTCTTTTCTCgagttc
ttttcttttttgtcgatAAAAGTTTGACCCATCATGTAATAGATTTTTTC
TTGACTTACCCTTAGTTTCTGAgaatctttttatagaatttttcTCGAGT
CTGAGAACTTTTGTGTCACGTGAACAGCAGCTCTCACTTGAAAAATAATG
ATCATAAGAAACTATGAAAAATGATCAAACATATTTCTTTAGTCCGCCCA
TTATTAACGACTTTTAAAGAAAACCTCATTTTTTCATTACTAAGCAATGA
ATATAAAGTGCTCATTAAAAAACATTATCCAAATGAAACCGGACAGGCTG
TAAATTTCgcatctacaatcagtgccaaaatacttggcacaaaagggaaa
ttccccacgaaATTCTATAaacacaaacaatttggaagcgctctaaatta
ggttggaagggtagagttttaactctgagttttaacgctagacttaagat
cttaggatctgaggatccaaaagttcaaaaatggtccggtagggcttgaa
atatagcctagaaaccaataaatccctcacagatcgaaatattcgatgaa
gccaagttgaaggcccgaaattaacattctcgctcgaacttcaattttcg
aaaaatggtagaatagccaaaattgccaatatgttatggcactgattgtt
gGTCTGTTTGTGTCTGTGCTTGACCATCTAAACCTAATATGTGGTTAGAC
TGGagattcaaaaataattaactGGAATTTGgcgcaaagcttctgattgt
ctgtttttttttcatttttcttattttcacattttcagGTCTGCGGACTT
AATGATATTCTCTACAGTCAACACGGCATATTCTCTTGTTACAAATTTTT
CCAAACcattaagggaacttattttggtgagaactaattttggcaaattt
gatgagtttagacaaaattcgccaaaatgaatttttgttgtttttttgtc
tcAATATCcttaaattcatcaaaattgcaaaaaaggACAGGTTTAGGTTa
ttgtcattcgccaaaattagatctcgccaaatttaccaaattttGGACCA
TTCGTCAAAATAAGTTCTTgtcaatattaaaaattttcaaaatttagtaa
ttcgccaaaattagttttcgCCGAAATAAGTTCGCTAAATGTAATGAGCT
GTTATTGAATAATTGCCAACTCCAGTGCAGGATTTCTCGTTGTCAATCAA
TTTCGTTCACTTTGGTTTATATTTCTAGTGAAAGTATTGTCGTTGAAGAA
CCGTTATTAACCATGTCTCATAAAATCGGTGTTTGTCAAGTTCATGTAGA
CGGGAAACCATGCTCTACCACTTTTCACAAGATATCGTTCAATGGTAAAA
GCAGCTTGGTTCGTTGTAAGTTAATTCTCATGCTTCATTCTTTTtattag
tgttttttttttcttttgcactgaggtttttaaatgaaacaatagagttt
CGAAatctaagccaatcagctgtgctttaaacattcttttgttttagatc
tctattgataaacttctttggttaaaaatttctattatgTTTAATCCTAC
TAATAGGTGAATTCCCGTTGGGGGTCatatatacagtggagtctccataa
ctcgaaaaccACACGTGTAAAACAaagttgttcgagttaaggataTTTCG
AATTATGATTAACATTtaaaaggcattgttaactgaagggacgaggaAGC
TTGTTCAAGTTAATAAGGAGATATTCAATTTAAAGAGgttgagttaaaga
gactctattGTATTATTTCCAAAAGGATCTTTAGTCCTTGTACACGAGCG
TCACGGGTGATTTTTCNTTAAGGAGgttgagttaaagagactctattGTA
TTATTTCCAAAAGGATCTTTAGTCCTTGTACACGAGCGTCACGGgtgatt
tttcacttttagaAAACTTGATAGGTTAGCCTCCGTACTTTTTCTTTCCG
AAGAAGAagagttttgtttcatttttccataAATGtacccgtttcatatc
agacacatatttcatatcaggacagtgNTTCACATAAGTGtacccgtttc
atatcagacacatattttatatcaggacagtatctacctattgttatatc
atgctgatataagcaaaaaatggttattatttcctctttctgaccaatct
tgctccacatccgtttCAAACCaaagtgaaaaagcttgtaaattaaaatt
gacgagtaagcaaacgatatcactcttatttaaaaacaaaacctttaaca
tgtAAGATTAAATAATGTTTATTTCCAATCCTTTATTCGGTGTAGGTTTA
CCACGTACAGGACGTATGCATCAGATACGAGTCCATTTGCAATGGCTTGG
TCACCCCATTCTAAACGATCCGATTTACAATCATGCCACAGCTTGGGGTG
AAGGTGGTGGAAAGAAAGGGACAGAGATTGATGTCAAAAAGGTTTGAAAT
ACGTGTTGGGTATAGCCTGGATATATTCTTTTTAATCAAGCCTGGAATCA
GAAGCCTGATATAAGGCTGACggcaatagcgagtttatgtattcgagata
aatcgagggggacggtataaagcaaagctgacatggggtcaaaatcgccg
tccactttgctcgacgacggtaaaaacaccaagataccgtcgtctgttta
ggtgagcaaaggcgatattgagccgtacatcaactatcgactttgttttg
tatcgatttcacttaccgtcgccctcgatatcctccgatacataaactcg
gtaatatagCGTGTTTAGGTGGTGTGTTTAGCCTCTACGCTATATGTCTT
TTTAATCAAGCCTTGAATCATAAGGCTTAGCTAAAGCTGATGGCACTAAA
GCGTCATCGGCGCTTagcttttttaagcttttttaattCTAGTAAGTGAA
ACTAGCTTGGATTCCTAGGATATTCTAGAGATTATTATGATCAAATCTAG
AATCACAGGCTCATAGGTACGGAAAAGTTTATACCGATAGAAATTGGGCT
TAAAATTGGGAAACCGGTCTCTCGGAAGACGCTCTTTTTCAGACCTGTAC
AAATAAAACGATGCTAGTATTTTGTTTGATGAGAAATAATAGAATTGCTG
AACAAATTCCAGGTGGTGGCTGAACTCATCCGAACACGTAAGGACAAGTC
GTACGACGACGCCACTGGTGGTCAGGACGAAAATAGAGCTACGGCAAAAT
CCGAGAAAGACAATAATAATCATCGTCAGTCGAAAAAGCTGAAAACAGAC
GACGGGGGTTCTGTCGAAGTAAAAACGGAGATAACGTCTAATTCTTCGAA
TTCAATAGACGCTGATGCTAATCAGAAAAGTAAAGTTCAAAATGGCTGTT
CACTAAAAGGGGTGAGAGAAACAGACAATATAAAAACGAACGGTACTTCA
GACAAGTTAAGTCATTTAAATATTCAGAAGGCAAACTCAACTGAGTGTGA
AACAAACTCTACGACAGAGAGCGAAACTTCTGCAATGGAGAACAAAGTTA
AAGACCTTTCTACTCTAAAATGTGAAGAAAATTCTAATAAGGAGAGTGTG
GCGGAGAAGAGAGAAGGAAGCTCTGGGAAGGAGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043769	XLOC_043769	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_52	supercontig	scaffold_52:16321..23454 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.74638	4.46248	1.38333	1.20398	0.000160577	0	1.90451	0	1.81235	8.71992e-10	1.57824	0	0	4.03739	0.00185744	3.50233	3.08682e-07	0.00153155	1.89906	0.00351621	0.500736	0	4.41918	2.90349	1.86214	4.58812	3.42273	0.688138	3.3517	6.2637

Blast

[Close]

BLAST of TCONS_00070286 vs. Swiss-Prot (Human)
Match: RUSD2 (RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens GN=RPUSD2 PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 4.863e-75
Identity = 109/189 (57.67%), Postives = 146/189 (77.25%), Query Frame = 1

Query:   55 DQDMIVINKPASIPVHPCGRYRHNTVVFILGKDHGLERLHTIHRIDRLTSGILMFAKTPEKAKAMETAVHGRNVEKVYYARVEGDFPSESIVVEEPLLTMSHKIGVCQVHVDGKPCSTTFHKISFNGKSSLVRCLPRTGRMHQIRVHLQWLGHPILNDPIYNHATAWGEGGGKKGTEIDVKKVVAELIR 621
            ++D++V++KP+SIPVHPCGR+RHNTV+FILGK+H L+ LH +HR+DRLTSG+LMFAKT   ++ +   V  R +EK Y  RVEG+FP+E +  +EP+L +S+K+GVC+V   GKPC T F ++S+NG+SS+VRC P TGR HQIRVHLQ+LGHPILNDPIYN + AWG   G+ G    + K   EL+R
Sbjct:  229 NEDVVVVDKPSSIPVHPCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDPRGKPCETVFQRLSYNGQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIYN-SVAWGPSRGRGGY---IPKTNEELLR 413

The following BLAST results are available for this feature:

BLAST of TCONS_00070286 vs. Swiss-Prot (Human)

BLAST of TCONS_00070286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RUSD2	4.863e-75	57.67	RNA pseudouridylate synthase domain-containing pro...	[more]

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TCONS_00070286 (transcript) - C. hemisphaerica