TCONS_00070291 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070291
Unique NameTCONS_00070291
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3131

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070291 ID=TCONS_00070291|Name=TCONS_00070291|organism=Clytia hemisphaerica|type=transcript|length=3131bp
ATGCCGTTACAAGATTGTTATCAGGGATACGATATGTCCTTTTTGTTGTT
GATCACACAAATGAGTTGGGAGGAGGAGAAAATATTATAGAATTAAAGCC
ACGCGTATTGGATAAGATAAACACTGCAATGGATACAGTGGGTTCCGCAT
CATGCATCTGTTGAAGAAAGTGAGGTATATTATATTTTTCCTATCATGCT
TGGTGTTACATACATGCTATCGTTCAACCAGCAGTATTGTGAGTCAAAAA
TAACCTTATGAACCTgtctattattttatttttaacttttctctttttca
caGCTTGATTTGAAACAAGAAGATAATGCCATTGTAACCCATCATCCTAA
ACGTGTTAAAAGAAAGTGACCTGTAGTGTAATTGCATTTTGAAAGAATAG
TTTATTTTGGTCTTTTTATACTTTCAGAAGAGAACATTTTGTTCTGTGCA
TCAAACAGGAGATCTAAATCAAGTCAGTGTTAGATTTAAGTCACCAAGGG
CTTATAAACTTCTTAAGTTCCTATGcaataataaaatcttattttctagA
GGTACTTGAAATGTTTTGAatcataaattttcagaaaaagtaacATCAAT
CTCCTTTCGAGTAATAAAGTTTGGCTTTATAAAAATGTTTAATGTCTTTG
TAATCTCAACCTATTTTACATCTTTACCCATTTAATactaaaacattttc
tgcttACTATTTAGTTCACAATGCAGATATTTATAAAGTTAATAGCTGGT
ATAACTAAAACATTTAATGTTGAGCCAAACGACAGAATTCACACTGTCAA
GGGTTGGATAACAGATGTGATTGGTGCCCCAATTGATCAGCAGCGATTGA
TATTTTGTGGCAAGCTATTGGAGGATCATAAGGCAATACGAGATTATAAA
ATTTATGAGGACTCCACCCTGCACATGGTACTTCGTTTGAGAGGCATGAT
ATCAAATTTCTCTGAATTTGATGAAAAGGATCCACTTAATGCGTTTTTGA
TGCAAGGAGATGTTACCGGAGTTGAAATCTCAGAACagcttttaaaagaa
aagagaaaaacatgtGATTTTGGttctaaaatatcaaaattgaaacTGCA
TTATACTggtgatgaaattttgagtGATGAGCAAAGAAGAAAGTTGATCA
ATCTAGCTGACTTTACGCATTTCTTGCATCAAGTGAAAAAGAAGTCGGAA
ACTGTTTTTCAGGATATAAAAATCATCATACCCAATGGACTTTTGAATCA
AATCATTGAAAGTGTTGGGGTTGAAGATACCTTGAAAAGTCACCACACAG
AGACTTCTTGTAatacaaaatttgttttgagaCGCACATCTCCGACACAA
GGATGTTTGCCTTGGCATGTTGATGGAGTTTATTCAAATTCTGTTGTCCA
ATCCACTTTAAATGATGATAAAAGTTTCACTGGTGGAAAATTATGTTATT
TCATTGATGACACAGGCTTGTTTATCCTCGTCGTCCTGCTGGAACTTTAT
CTGTGCATCAGAAAGAAATCATGTTGTCACAAAGATTGTTAAGTGGTGTG
CGATATGTTCTCTTTGTGGTTGACTGCAGGAATCATTTAAGTGACTCTGA
AGAAAATATTGTGACATTGGACCAGAAAATGTTGGATAAAATGAATGCTG
CATTGAAAAGTTCATCAGAATCTGATGAAGAATCCGATGAAGAATCAGAT
GAGGATGAAGAATCAGACGAGGATGAAGAATTAGATGTTGAATCAGATGA
AGATGATGATAAGAATAACAATGAACTCAGAACAGAGGTTGTTGTTGGTG
GTGAAGAAATTAATGGGGAAGCTGATGACGGAGAAGCTGGTGCAAGAGGT
GCAAAACGAGCCAGAAGACACTGAATGATATATATCATGATAGACATTTG
TTGTTTctgattttgttatttttgttcatGAATTTATCGATAAATACAAA
ACATGTCCCATGGGCTTCACATACTGTTTGTCACTCTCTCAGCCATAGCA
CTCCTTATTTTTTATGCACTATAAAAATGAACTCAGCTAACTATAGTTCT
TTTGTATGTTTCAGACAATATGCAAATATTTGTGAAGACTTTAACTGGTA
AAACTTTAGCTTTGAAATGTGATCCAAATTATACAATACATGACTGCCAA
TGCCAAATACAAGATATGGAAGGTATCCCTCCTTCTGCACAACGTTTAAT
TTTTACTGGAAAGCAATTGGAAgttcatcacaaattgattgaCTATGGTA
TTAAAAAGGAAGATACTCTGCACTTAGTACTTCGATTGCGAGGGATGATA
TCCAATTTCTCTGAATACGATGTCACTGACCCTGTAACAGCATTTTTAAT
GAAAGGTGACATAACTGGAGTTGAAATCTCAGATGAACTTTTAAAAGAGA
AAAGGAAATCTATTCCAAACAGTGCGGAATACTCCAAATTGAAGATGGAG
TACACTCATGAAAGTATAATGagtgaaaatcaaagaaaaaaattactcgG
TGTGGCTGACTACATTCATTCTTTGCAACAAATTAGAAGAAAACCTCAGC
AGGTTTTACAAGATATTAAAATTATATTACCTGATGGTGTGATCAATGAA
ATTACTCTTGTAAGGTGTATTGAAAAGATTCTGAAAAGTCACCATCCATC
AAACTCAGGTTTGAAACTGGTTCTAAGGAGAACATGCCCAACTGAAGGAT
GTCTACCTTGGCATGTTGATGGAAGTTATTCTCAAGGTGTAGTTCAATAC
ACACTTAACAGTGATAACGAGTACACTGGAGGGAGATTATGTTATTATAC
TGATGATGTTGGTCTTTTTGTACCGCAGCGATCAGCAGGTACTCTATCTA
TACATCAAAGAGAAATACATGCAGTCACCAAATTATTGTCAGGTGTACGA
TATGTCCTTTTTGTTGTTGATGGCACCAATGATTTAGGTGGTTCCGATGC
AAATATTGTGAAGTTAAGACCAAAACTCTTGGCAAAAATGAAATCCTCAA
TGGAACTGTTAGATTGTGATTCAGATGACGAGGACGATGAAAGTGATACG
AGAAGTAACAAAAGGGATCAGAAGGAAGACCCAACTCCAAGTCGTGCGAA
ACGAGCCAGAAAAAACTGATTCTACTTGATT
Run BLAST on NCBI

protein sequence of TCONS_00070291-protein

>TCONS_00070291-protein ID=TCONS_00070291-protein|Name=TCONS_00070291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
MQIFVKTLTGKTLALKCDPNYTIHDCQCQIQDMEGIPPSAQRLIFTGKQL
EVHHKLIDYGIKKEDTLHLVLRLRGMISNFSEYDVTDPVTAFLMKGDITG
VEISDELLKEKRKSIPNSAEYSKLKMEYTHESIMSENQRKKLLGVADYIH
SLQQIRRKPQQVLQDIKIILPDGVINEITLVRCIEKILKSHHPSNSGLKL
VLRRTCPTEGCLPWHVDGSYSQGVVQYTLNSDNEYTGGRLCYYTDDVGLF
VPQRSAGTLSIHQREIHAVTKLLSGVRYVLFVVDGTNDLGGSDANIVKLR
PKLLAKMKSSMELLDCDSDDEDDESDTRSNKRDQKEDPTPSRAKRARKN
Run BLAST on NCBI

transcript from alignment at scaffold_52:94270..98131+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070291 ID=TCONS_00070291|Name=TCONS_00070291|organism=Clytia hemisphaerica|type=transcript|length=3862bp|location=Sequence derived from alignment at scaffold_52:94270..98131+ (Clytia hemisphaerica)
ATGCCGTTACAAGATTGTTATCAGGGATACGATATGTCCTTTTTGTTGTT
GATCACACAAATGAGTTGGGAGGAGGAGAAAATATTATAGAATTAAAGCC
ACGCGTATTGGATAAGATAAACACTGCAATGGATACAGTGGGTTCCGCAT
CATGCATCTGTTGAAGAAAGTGAGGTATATTATATTTTTCCTATCATGCT
TGGTGTTACATACATGCTATCGTTCAACCAGCAGTATTGTGAGTCAAAAA
TAACCTTATGAACCTgtctattattttatttttaacttttctctttttca
caGCTTGATTTGAAACAAGAAGATAATGCCATTGTAACCCATCATCCTAA
ACGTGTTAAAAGAAAGTGACCTGTAGTGTAATTGCATTTTGAAAGAATAG
TTTATTTTGGTCTTTTTATACTTTCAGAAGAGAACATTTTGTTCTGTGCA
TCAAACAGGAGATCTAAATCAAGTCAGTGTTAGATTTAAGTCACCAAGGG
CTTATAAACTTCTTAAGTTCCTATGcaataataaaatcttattttctagA
GGTACTTGAAATGTTTTGAatcataaattttcagaaaaagtaacATCAAT
CTCCTTTCGAGTAATAAAGTTTGGCTTTATAAAAATGTTTAATGTCTTTG
TAATCTCAACCTATTTTACATCTTTACCCATTTAATactaaaacattttc
tgcttACTATTTAGTTCACAATGCAGATATTTATAAAGTTAATAGCTGGT
ATAACTAAAACATTTAATGTTGAGCCAAACGACAGAATTCACACTGTCAA
GGGTTGGATAACAGATGTGATTGGTGCCCCAATTGATCAGCAGCGATTGA
TATTTTGTGGCAAGCTATTGGAGGATCATAAGGCAATACGAGATTATAAA
ATTTATGAGGACTCCACCCTGCACATGGTACTTCGTTTGAGAGGCATGAT
ATCAAATTTCTCTGAATTTGATGAAAAGGATCCACTTAATGCGTTTTTGA
TGCAAGGAGATGTTACCGGAGTTGAAATCTCAGAACagcttttaaaagaa
aagagaaaaacatgtGATTTTGGttctaaaatatcaaaattgaaacTGCA
TTATACTggtgatgaaattttgagtGATGAGCAAAGAAGAAAGTTGATCA
ATCTAGCTGACTTTACGCATTTCTTGCATCAAGTGAAAAAGAAGTCGGAA
ACTGTTTTTCAGGATATAAAAATCATCATACCCAATGGACTTTTGAATCA
AATCATTGAAAGTGTTGGGGTTGAAGATACCTTGAAAAGTCACCACACAG
AGACTTCTTGTAatacaaaatttgttttgagaCGCACATCTCCGACACAA
GGATGTTTGCCTTGGCATGTTGATGGAGTTTATTCAAATTCTGTTGTCCA
ATCCACTTTAAATGATGATAAAAGTTTCACTGGTGGAAAATTATGTTATT
TCATTGATGACACAGGCTTGTTTATCCTCGTCGTCCTGCTGGAACTTTAT
CTGTGCATCAGAAAGAAATCATGTTGTCACAAAGATTGTTAAGTGGTGTG
CGATATGTTCTCTTTGTGGTTGACTGCAGGAATCATTTAAGTGACTCTGA
AGAAAATATTGTGACATTGGACCAGAAAATGTTGGATAAAATGAATGCTG
CATTGAAAAGTTCATCAGAATCTGATGAAGAATCCGATGAAGAATCAGAT
GAGGATGAAGAATCAGACGAGGATGAAGAATTAGATGTTGAATCAGATGA
AGATGATGATAAGAATAACAATGAACTCAGAACAGAGGTATACAAAATCT
AATTTAGCAGCAAGATCTGAAAATACATTTATTACATTTCAGTGgaacat
tgggcttttccagaaaaatattttgcccccactgttgaggatattgattt
ttcgaagtatcgaaccccctggatatcctactttattagtaaagaccccc
tggatatccactctcaaaaatatgctcaaccccctggatatcctctctta
taaagatgcttacacCTGGATATCgtaattttttacttgaaaagacactt
tactcCCTGGATATctgctcccttgtagatatttaaccccgaTAGCCGAT
agcctcaacagggggggggggcacagaCTATTTCAGGAAAAGCCCATTAA
TggttaaaatatttccaactttCAGATTAGAACTGAAAAATCTCTGATCA
AACTATGTATTGCTGTTTTAAAAGGTTGTTGTTGGTGGTGAAGAAATTAA
TGGGGAAGCTGATGACGGAGAAGCTGGTGCAAGAGGTGCAAAACGAGCCA
GAAGACACTGAATGATATATATCATGATAGACATTTGTTGTTTctgattt
tgttatttttgttcatGAATTTATCGATAAATACAAAACATGTCCCATGG
GCTTCACATACTGTTTGTCACTCTCTCAGCCATAGCACTCCTTATTTTTT
ATGCACTATAAAAATGAACTCAGCTAACTATAGTTCTTTTGTATGTTTCA
GACAATATGCAAATATTTGTGAAGACTTTAACTGGTAAAACTTTAGCTTT
GAAATGTGATCCAAATTATACAATACATGACTGCCAATGCCAAATACAAG
ATATGGAAGGTATCCCTCCTTCTGCACAACGTTTAATTTTTACTGGAAAG
CAATTGGAAgttcatcacaaattgattgaCTATGGTATTAAAAAGGAAGA
TACTCTGCACTTAGTACTTCGATTGCGAGGGATGATATCCAATTTCTCTG
AATACGATGTCACTGACCCTGTAACAGCATTTTTAATGAAAGGTGACATA
ACTGGAGTTGAAATCTCAGATGAACTTTTAAAAGAGAAAAGGAAATCTAT
TCCAAACAGTGCGGAATACTCCAAATTGAAGATGGAGTACACTCATGAAA
GTATAATGagtgaaaatcaaagaaaaaaattactcgGTGTGGCTGACTAC
ATTCATTCTTTGCAACAAATTAGAAGAAAACCTCAGCAGGTTTTACAAGA
TATTAAAATTATATTACCTGATGGTGTGATCAATGAAATTACTCTTGTAA
GGTGTATTGAAAAGATTCTGAAAAGTCACCATCCATCAAACTCAGGTTTG
AAACTGGTTCTAAGGAGAACATGCCCAACTGAAGGATGTCTACCTTGGCA
TGTTGATGGAAGTTATTCTCAAGGTGTAGTTCAATACACACTTAACAGTG
ATAACGAGTACACTGGAGGGAGATTATGTTATTATACTGATGATGTTGGT
CTTTTTGTACCGCAGCGATCAGCAGGTACTCTATCTATACATCAAAGAGA
AATACATGCAGTCACCAAATTATTGTCAGGTGTACGATATGTCCTTTTTG
TTGTTGATGGCACCAATGATTTAGGTGGTTCCGATGCAAATATTGTGAAG
TTAAGACCAAAACTCTTGGCAAAAATGAAATCCTCAATGGAACTGTTAGA
TTGTGATTCAGATGACGAGGTTGGTGAAAACAGCAATATTAATAAAGTAT
ATTTTGTCTTCATTTCAATCAACAAAGTTTAAATAGAATATTTTGGAAGG
TTATTTAGCAAAATTTCAAGACTATGTGCTCTAATTTGCTGTGTAGAATC
AATTCCTTCTCAAAcaaaaaaccttgctttgaccactggcATATGACACT
CTGCTGCCAGCTATGTACTATCAgattgaaaaattgtaaaagctTTTACA
GCATAGCTGTAGTAATAGTTTCCGAAAGATGTGTCCAAAGTTACATCTCA
AACTCTTGTTTAGGACGATGAAAGTGATACGAGAAGTAACAAAAGGGATC
AGAAGGAAGACCCAACTCCAAGTCGTGCGAAACGAGCCAGAAAAAACTGA
TTCTACTTGATT

Coding sequence (CDS) from alignment at scaffold_52:94270..98131+

>TCONS_00070291 ID=TCONS_00070291|Name=TCONS_00070291|organism=Clytia hemisphaerica|type=CDS|length=2100bp|location=Sequence derived from alignment at scaffold_52:94270..98131+ (Clytia hemisphaerica)
ATGCAAATATTTGTGAAGACTTTAACTGGTAAAACTTTAGCTTTGAAATG
TGATCCAAATTATACAATACATGACTGCCAATGCCAAATACAAGATATGG
AAGGTATCCCTCCTTCTGCACAACGTTTAATTTTTACTGGAAAGCAATTG
GAAgttcatcacaaattgattgaCTATGGTATTAAAAAGGAAGATACTCT
GCACTTAGTACTTCGATTGCGAGGGATGATATCCAATTTCTCTGAATACG
ATGTCACTGACCCTGTAACAGCATTTTTAATGAAAGGTGACATAACTGGA
GTTGAAATCTCAGATGAACTTTTAAAAGAGAAAAGGAAATCTATTCCAAA
CAGTGCGGAATACTCCAAATTGAAGATGGAGTACACTCATGAAAGTATAA
TGagtgaaaatcaaagaaaaaaattactcgGTGTGGCTGACTACATTCAT
TCTTTGCAACAAATTAGAAGAAAACCTCAGCAGGTTTTACAAGATATTAA
AATTATATTACCTGATGGTGTGATCAATGAAATTACTCTTGTAAGGTGTA
TTGAAAAGATTCTGAAAAGTCACCATCCATCAAACTCAGGTTTGAAACTG
GTTCTAAGGAGAACATGCCCAACTGAAGGATGTCTACCTTGGCATGTTGA
TGGAAGTTATTCTCAAGGTGTAGTTCAATACACACTTAACAGTGATAACG
AGTACACTGGAGGGAGATTATGTTATTATACTGATGATGTTGGTCTTTTT
GTACCGCAGCGATCAGCAGGTACTCTATCTATACATCAAAGAGAAATACA
TGCAGTCACCAAATTATTGTCAGGTGTACGATATGTCCTTTTTGTTGTTG
ATGGCACCAATGATTTAGGTGGTTCCGATGCAAATATTGTGAAGTTAAGA
CCAAAACTCTTGGCAAAAATGAAATCCTCAATGGAACTGTTAGATTGTGA
TTCAGATGACGAGGACGATGAAAGTGATACGAGAAGTAACAAAAGGGATC
AGAAGGAAGACCCAACTCCAAGTCGTGCGAAACGAGCCAGAAAAAACTGA
ATGCAAATATTTGTGAAGACTTTAACTGGTAAAACTTTAGCTTTGAAATG
TGATCCAAATTATACAATACATGACTGCCAATGCCAAATACAAGATATGG
AAGGTATCCCTCCTTCTGCACAACGTTTAATTTTTACTGGAAAGCAATTG
GAAgttcatcacaaattgattgaCTATGGTATTAAAAAGGAAGATACTCT
GCACTTAGTACTTCGATTGCGAGGGATGATATCCAATTTCTCTGAATACG
ATGTCACTGACCCTGTAACAGCATTTTTAATGAAAGGTGACATAACTGGA
GTTGAAATCTCAGATGAACTTTTAAAAGAGAAAAGGAAATCTATTCCAAA
CAGTGCGGAATACTCCAAATTGAAGATGGAGTACACTCATGAAAGTATAA
TGagtgaaaatcaaagaaaaaaattactcgGTGTGGCTGACTACATTCAT
TCTTTGCAACAAATTAGAAGAAAACCTCAGCAGGTTTTACAAGATATTAA
AATTATATTACCTGATGGTGTGATCAATGAAATTACTCTTGTAAGGTGTA
TTGAAAAGATTCTGAAAAGTCACCATCCATCAAACTCAGGTTTGAAACTG
GTTCTAAGGAGAACATGCCCAACTGAAGGATGTCTACCTTGGCATGTTGA
TGGAAGTTATTCTCAAGGTGTAGTTCAATACACACTTAACAGTGATAACG
AGTACACTGGAGGGAGATTATGTTATTATACTGATGATGTTGGTCTTTTT
GTACCGCAGCGATCAGCAGGTACTCTATCTATACATCAAAGAGAAATACA
TGCAGTCACCAAATTATTGTCAGGTGTACGATATGTCCTTTTTGTTGTTG
ATGGCACCAATGATTTAGGTGGTTCCGATGCAAATATTGTGAAGTTAAGA
CCAAAACTCTTGGCAAAAATGAAATCCTCAATGGAACTGTTAGATTGTGA
TTCAGATGACGAGGACGATGAAAGTGATACGAGAAGTAACAAAAGGGATC
AGAAGGAAGACCCAACTCCAAGTCGTGCGAAACGAGCCAGAAAAAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043773XLOC_043773Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070291-proteinTCONS_00070291-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070291-exon-scaffold_52-1491911889:94270..96056TCONS_00070291-exon-scaffold_52-1491911889:94270..96056Clytia hemisphaericaexon
TCONS_00070291-exon-scaffold_52-1510915933:94270..96056TCONS_00070291-exon-scaffold_52-1510915933:94270..96056Clytia hemisphaericaexon
TCONS_00070291-exon-scaffold_52-1575043694:94270..96056TCONS_00070291-exon-scaffold_52-1575043694:94270..96056Clytia hemisphaericaexon
TCONS_00070291-exon-scaffold_52-1491911889:96494..97738TCONS_00070291-exon-scaffold_52-1491911889:96494..97738Clytia hemisphaericaexon
TCONS_00070291-exon-scaffold_52-1510915933:96494..97738TCONS_00070291-exon-scaffold_52-1510915933:96494..97738Clytia hemisphaericaexon
TCONS_00070291-exon-scaffold_52-1575043694:96494..97738TCONS_00070291-exon-scaffold_52-1575043694:96494..97738Clytia hemisphaericaexon
TCONS_00070291-exon-scaffold_52-1491911889:98033..98131TCONS_00070291-exon-scaffold_52-1491911889:98033..98131Clytia hemisphaericaexon
TCONS_00070291-exon-scaffold_52-1510915933:98033..98131TCONS_00070291-exon-scaffold_52-1510915933:98033..98131Clytia hemisphaericaexon
TCONS_00070291-exon-scaffold_52-1575043694:98033..98131TCONS_00070291-exon-scaffold_52-1575043694:98033..98131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:94270..98131 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.60219	2.62884	1.06189	0.899315	2.31219	2.01899	2.34172	2.5107	2.03035	1.3579	1.65852	1.82033	1.9322	1.98872	2.37207	3.54196	2.13102	3.02994	2.04887	1.87697	2.11516	2.52028	2.94135	3.1178	2.90232	2.58642	1.12622	0.849008	1.68525	1.21827
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00070291 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.281e-25
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 3 
Query: 2046 VLLYVSDNMQIFVKTLTGKTLALKCDPNYTIHDCQCQIQDMEGIPPSAQRLIFTGKQLEVHHKLIDYGIKKEDTLHLVLRLRGMISNF 2309
            ++L +   MQIFVKTLTGKT+ L+ +P+ TI + + +IQD EGIPP  QRLIF GKQLE    L DY I+KE TLHLVLRLRG +  F
Sbjct:   69 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 156

HSP 2 Score: 105.531 bits (262), Expect = 1.394e-24
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 3 
Query: 2046 VLLYVSDNMQIFVKTLTGKTLALKCDPNYTIHDCQCQIQDMEGIPPSAQRLIFTGKQLEVHHKLIDYGIKKEDTLHLVLRLRG 2294
            ++L +   MQIFVKTLTGKT+ L+ +P+ TI + + +IQD EGIPP  QRLIF GKQLE    L DY I+KE TLHLVLRLRG
Sbjct:  145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 227

HSP 3 Score: 105.145 bits (261), Expect = 1.847e-24
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 3 
Query: 2070 MQIFVKTLTGKTLALKCDPNYTIHDCQCQIQDMEGIPPSAQRLIFTGKQLEVHHKLIDYGIKKEDTLHLVLRLRGMISNF 2309
            MQIFVKTLTGKT+ L+ +P+ TI + + +IQD EGIPP  QRLIF GKQLE    L DY I+KE TLHLVLRLRG +  F
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80

HSP 4 Score: 93.9745 bits (232), Expect = 9.004e-21
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:  694 HFLLTI*FTMQIFIKLIAGITKTFNVEPNDRIHTVKGWITDVIGAPIDQQRLIFCGKLLEDHKAIRDYKIYEDSTLHMVLRLRGMISNF 960
            H +L +   MQIF+K + G T T  VEP+D I  VK  I D  G P DQQRLIF GK LED + + DY I ++STLH+VLRLRG +  F
Sbjct:   68 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 156

HSP 5 Score: 93.2041 bits (230), Expect = 1.732e-20
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  694 HFLLTI*FTMQIFIKLIAGITKTFNVEPNDRIHTVKGWITDVIGAPIDQQRLIFCGKLLEDHKAIRDYKIYEDSTLHMVLRLRG 945
            H +L +   MQIF+K + G T T  VEP+D I  VK  I D  G P DQQRLIF GK LED + + DY I ++STLH+VLRLRG
Sbjct:  144 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 227

HSP 6 Score: 91.6633 bits (226), Expect = 5.990e-20
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:  721 MQIFIKLIAGITKTFNVEPNDRIHTVKGWITDVIGAPIDQQRLIFCGKLLEDHKAIRDYKIYEDSTLHMVLRLRGMISNF 960
            MQIF+K + G T T  VEP+D I  VK  I D  G P DQQRLIF GK LED + + DY I ++STLH+VLRLRG +  F
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80
The following BLAST results are available for this feature:
BLAST of TCONS_00070291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBB6.281e-2559.09Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1[more]
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